 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARL16,TOMM20,PRPSAP2,TBC1D24,MFSD8,MDM2,C12orf57,ANAPC1,WDR89,KIFC3,TRIQK,DYNC2LI1,CDC42EP4,RHNO1,VAMP4,N4BP2L2,BCS1L,DMTF1,SLC16A4,CACYBP,PHF10,SENP1,LMBR1L,MIEF2,BCCIP,PNKD,LRRC1,WDCP,ULK3,SMAGP,METTL5,TULP3,ZFP14,CENATAC,SMUG1,SAFB2,KCTD13,SNAPC1,MSANTD2,AMN1,COA3,PARG,FAM133B,TERF2IP,ZBED5,ARL1,GNPAT,TSPAN3,ACTR6,TRIP10,KLHL42,SVBP,SMIM15,ADSS2,SPG7,KDM5A,SPATA18,FAM104B,C19orf44,PPP1R13L,SCYL3,SDF2,CLK2,TARBP2,ILKAP,ARID4B,BLZF1,POLG2,LYPLAL1,IFT81,CEP89,RIC8B,UBE3A,TOP2B,RPAP3,CBY1,CLK1,AGBL5,RABL2A,H3-3A,ARMC10,ANKRD39,RPAIN,MOV10,OFD1,ACYP1,DRAM1,SLC25A29,TMEM243,PON2,CDKN2AIPNL,SLC4A1AP,CFAP298,MIS12,DERL2,RSRC2,TTC21B,CAMKMT,LMAN2L,ZNHIT6,C3orf62,RDH14,ZADH2,GON4L,ALKBH2,ANAPC5,ZBED8,ORMDL1,YTHDC1,COQ7,SH2D3A,C12orf73,AGER,BRIX1,ORC2,PRPF38A,GUF1,SRSF2,C1orf52,BTF3L4,TFCP2,GTF2H1,TYW3,MTMR2,ATG4B,CCDC191,LMNTD2,TMBIM6,C2orf76,PFDN5,ERGIC2,CCS,RIOK1,HMGN3,STX6,NOP2,FAM193B,SSX2IP,STK25,XPO1,MLF2,CIR1,ZFC3H1,NFYB,MBTD1,SEPSECS,COA6,SDHAF2,HDAC8,GAS8,DDX42,CASP6,VCPKMT,DENR,TTC3,CCDC24,LYSMD1,SVIP,FDXR,EIF2AK2,TDRP,GCA,SWT1,IQCC,KBTBD6,AMMECR1L,TMEM168,IPO8,CEP20,IFT57,FLVCR1,FANCL,MRPL55,EMG1,CSNK1G1,CEP57,UBE2G2,H3-3B,PPOX,MLLT6,PRPF40A,SASS6,RBM27,AHI1,C19orf53,PHB2,INO80C,INO80D,SH3YL1,DDX55,HSCB,ARFGAP1,MNS1,HPF1,PGRMC2,PFDN2,DNAJB4,GLMN,FAM111A,METTL21A,GCFC2,FAM136A,THOC1,WDR59,CCDC59,NXN,GNPTG,NUTF2,ACBD6,LANCL1,ODR4,IFT140,UNG,GMDS,PCBP2,TRIM13,FGFR1OP2,KANSL2,TMCO1,PHC1,PIDD1,METAP1D,JTB,CWC15,PUS7L,CPSF4,IFT80,CEP83,GGNBP2,HMGB1,METTL23,EXD3,TSN,C17orf75,STX8,IWS1,TBCB,CHRNB1,MTA3,MPC2,ZC3H8,ENOSF1,TTC8,PAXBP1,CCDC125,TM4SF1,FNTA,TADA2A,FNBP4,GOLT1B,LRRC56,NAP1L1,CETN3,USP40,NVL,MTIF2,AK6,SUMO2,NIT1,HDAC2,UPF3B,ROGDI,TMEM218,PYURF,RAB11FIP3,DDX11,C2orf68,MRE11,MFF,NDUFAF7,TOR1AIP2,TRMT13,PISD,TRIAP1,CCDC82,PIGF,POP5,RNF115,ACP1,NSL1,CLIP4,DSTN,RBM8A,KHDC4,ITGA3,CERS5,RSAD1,PIGB,PPP1R26,PLPP5,TRIOBP,LDHB,GLOD4,UNC119B,SPAG7,TCEAL8,ATP5IF1,ATAT1,MORN2,PYM1,PREPL,BCL2,ESCO1,TMX3,FGD6,TMEM17,CTBP1,ANGEL2,PKP4,MDM1,MYSM1,RAB4A,POMGNT1,DTD2,SMARCE1,TAF1D,KATNBL1,MYL12B,C1orf35,MTIF3,BUD23,IFT88,PIGC,SUV39H2,SUGT1,KLHDC4,MIS18A,ZMAT3,AFTPH,TTC30B,TTC19,BNIP2,CCDC115,MARCHF7,AFMID,ANKRD10,RPS6KB1,OBI1,NECAP1,CCDC77,CHTOP,N6AMT1,DHX57,TCEAL1,SEMA4C,CHST14,BPNT1,LLPH,KAT2A,ACBD4,CTPS2,LRRC23,CSTF3,RBM26,PLA2G6,NAPEPLD,RNPS1,BLOC1S2,SPATA6,SAP18,DCP1B,CEBPZOS,ENDOV,TP53I3,BBS10,COL9A2,DPY30,NGFR,MLH3,CLSTN3,RBM43,BAD,KANSL1L,POLI,PRPF39,ZNF34,ETNK1,KIAA0753,DCAF17,E2F6,DOK4,CETN2,TMEM69,GORAB,TMEM128,HSF4,ANKS3,ATRAID,NOXA1,POLR2D,C1RL,GMCL1,S100B,C10orf88,KRAS,ANKRA2,SGSM2,SUMO1,VPS33A,RNF25,CELF1,MEAF6,CCDC121,KRR1,SDCCAG8,RBM45,MICALL2,ACTR1B,COX7A2L,DYRK4,FAM149B1,R3HDM2,CENPS,VEZT,PMS1,NFIB,RNFT1,JAG1,TMEM87A,TIA1,HOOK2,ST6GALNAC2,ZNF83,TMUB2,RRAGC,PTPN2,USP43,BTG3,TMEM68,VSIG10,MYL6B,C12orf4,RNF215,LIPT1,NDUFA5,NUDCD2,LUC7L,CCND2,PHLDA3,COA5,IRF2BP2,CCAR1,BBS4,UXS1,TEX30,TRA2A,NSMCE4A,MAPKAPK5,POLR3F,HEBP1,NR2C1,GTF2H3,TM7SF3,FBXL14,LTBP3,C8orf76,BDH2,SMIM19,WBP1,RBM33,TRIT1,NDUFAF8,TMEM237,IMMP1L,NUP133,CHEK2,FPGT,METAP2,MPHOSPH10,CFDP1,RBM39,TATDN3,MRPS26,TMEM267,TBL1XR1,TMEM44,ITFG2,GXYLT1,COQ5,SNF8,NSRP1,PDS5A,PIGL,HSBP1,CSAD,KIAA0895L,PAAF1,ARV1,NDUFAF6,ZNF77,SAMD10,GPATCH2,MUTYH,SSPN,DCAF8,C2CD5,MFSD10,SPRYD7,FRA10AC1,PRKRA,PYCR2,B4GAT1,IFT27,ANKRD42,PHKG2,MED28,PMF1,PTGES3,CWC22,POLR2J,FLOT2,EXTL2,PA2G4,CENPT,FAS,G6PC3,CRLS1,IAH1,IVNS1ABP,SPPL3,IMMP2L,FAM76B,POGZ,ANAPC7,CCDC43,RBM4B,DTWD1,ADNP,WDSUB1,TEFM,ANKRD40,RNASEH2B,TXNDC17,TRIM33,LRP6,EZH1,MPV17,ELMOD3,E2F5,DDX17,GGPS1,ING4,INTS13,RAD52,GALNT11,DNAJC7,THYN1,CEP290,PGGHG,IFT46,COIL,GTF2A2,MAP4K3,ERP29,LRRC29,C12orf76,FAM228B,SLC39A6,USP21,ALS2,HEXIM1,TIGD1,KLC1,CRYZL1,TTC13,STK36,HMGN1,TTC32,TM2D1,GOLGA8B,COMMD6,RASSF8,UTP6,SS18,ACP6,DBNDD1,CBR4,ZNF18,CBWD2,EIF2D,TTC22,ITGAE,SETD4,CNOT2,TPRKB,RPS27L,PSMC5,GOLPH3L,TSNAX,RAB25,AARSD1,SPAG16,DUSP28,PUM2,BOLA1,ANP32A,RILPL2,BCDIN3D,NSMCE1,ZNF84,ZCRB1,PEX5,C17orf80,NEDD1,SPSB2,C2CD2,PIAS2,CRIPT,MRPS14,KATNIP,HSPB11,USPL1,CCDC112,CCDC57,TRAPPC2,MRFAP1L1,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,ANKRD39,PA2G4,E2F5,TRIM33,WDR75,GTF2H3,DENR,NSL1,KDM5A,ATAT1,PLEKHG6,G6PC3,TMEM237,DRAM1,COIL,ORC2,DGCR8,PAAF1,PISD,CCDC59,PHB2,KAT2A,RILPL2,PRKRA,RAD52,GORAB,IMMP2L,EIF2D,PFDN4,BNIP2,EFHC1,TULP3,ACP6,ST6GALNAC2,GTF2A2,RAB25,KBTBD6,CFAP36,LMAN2L,PGRMC2,RNF219,ANKRD40,GALNT11,DDX17,PPP1R35,KANSL1L,TIA1,CEP290,DDB2,KLHDC4,SS18,LYSMD1,CCDC77,C19orf44,CTPS2,DYRK4,SLC4A1AP,ING4,NSMCE1,PIDD1,NAPEPLD,AFMID,ZNF83,TMEM87A,CRYZL1,ATRAID,ATG4C,TATDN3,BDH2,PRPF3,FAM133B,CEP89,USP21,CELF1,ENOSF1,MIS18A,PPOX,ARID4B,SUMO2,PLEKHA5,FRA10AC1,SRP14,POLR2D,LUC7L,ZC3H11A,C14orf79,TRIAP1,DCP1B,RAD9A,MPHOSPH10,C3orf62,RPS27L,E2F6,METTL21A,GMNN,LDHB,C2CD5,C17orf75,RNASEH2B,ESCO1,SEPSECS,KIAA0907,TMEM44,CHEK2,PRR14,CEBPZOS,HSCB,NENF,PNKD,POGZ,SETD4,PON2,INO80C,C2orf68,SUZ12,NT5C,ITGB4,ELAC1,NDUFA5,RASSF8,SPINT2,COQ7,RNF25,LANCL1,ANGEL2,TMEM128,ATPIF1,HSF4,C21orf59,FAM111A,MFSD8,COMMD3,OSTC,TRIOBP,PKIG,WDR35,STK36,ING5,POLR2J,ACTR1B,TRIT1,C10orf35,MED21,MTIF2,TM4SF1,RBMS2,KRT19,TFCP2,RHNO1,NIT2,AARSD1,TMX3,DERL2,NUP85,NAA20,ALKBH2,MIS12,ZMAT3,MED28,PCBP2,CEP83,KIAA0556,MDM4 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | COPG1,GRK6,OGDH,NDUFS7,BCKDHA,EEF2,MYH9 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000247903 | ENST00000500632 | exon_skip_371367 | chr3:9697710-9697866 | -13.71 | -0.1080 | MTMR14 | ENST00000296003 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000247903 | ENSG00000115204 | MPV17 | ACC,CHOL,KICH,KIRP,THCA | KIRP | | | ENSG00000247903 | ENSG00000118971 | CCND2 | ACC,KIRP,PCPG,THCA,THYM,UCS | KIRP | | | ENSG00000247903 | ENSG00000138036 | DYNC2LI1 | ACC,CHOL,COAD,KICH,KIRP,LAML,LIHC,THYM,UVM | KIRP | | | ENSG00000247903 | ENSG00000161513 | FDXR | ACC,CHOL,KICH,KIRP,LGG,PRAD,TGCT,THCA | KIRP | | | ENSG00000247903 | ENSG00000186166 | CENATAC | ACC,CHOL,HNSC,KIRC,KIRP,LIHC,PCPG,THCA,UVM | KIRP | | | ENSG00000247903 | ENSG00000215252 | GOLGA8B | ACC,CHOL,KIRC,KIRP,UVM | KIRP | | | ENSG00000247903 | ENSG00000005075 | POLR2J | CHOL,DLBC,KIRP,LGG,THCA | KIRP | | | ENSG00000247903 | ENSG00000010626 | LRRC23 | CHOL,DLBC,KICH,KIRP,LGG,SKCM,TGCT | KIRP | | | ENSG00000247903 | ENSG00000102898 | NUTF2 | CHOL,DLBC,KIRP,PCPG,THCA | KIRP | | | ENSG00000247903 | ENSG00000108773 | KAT2A | CHOL,KICH,KIRC,KIRP,PAAD,THCA,UVM | KIRP | | | ENSG00000247903 | ENSG00000109736 | MFSD10 | CHOL,KIRP,LIHC,PAAD,TGCT,THCA,THYM | KIRP | | | ENSG00000247903 | ENSG00000136048 | DRAM1 | CHOL,KIRC,KIRP,LIHC,PRAD,THYM,UVM | KIRP | | | ENSG00000247903 | ENSG00000142102 | PGGHG | CHOL,HNSC,KIRP,THYM,UVM | KIRP | | | ENSG00000247903 | ENSG00000168096 | ANKS3 | CHOL,HNSC,KIRC,KIRP,LIHC,PCPG,TGCT,UVM | KIRP | | | ENSG00000247903 | ENSG00000170175 | CHRNB1 | CHOL,KICH,KIRP,LAML,UVM | KIRP | | | ENSG00000247903 | ENSG00000174943 | KCTD13 | CHOL,ESCA,HNSC,KIRP,LIHC,PCPG,THCA | KIRP | | | ENSG00000247903 | ENSG00000177595 | PIDD1 | CHOL,HNSC,KIRC,KIRP,PAAD,THCA | KIRP | | | ENSG00000247903 | ENSG00000196123 | KIAA0895L | CHOL,HNSC,KIRC,KIRP,UVM | KIRP | | | ENSG00000247903 | ENSG00000256525 | POLG2 | CHOL,COAD,HNSC,KICH,KIRC,KIRP,LAML,PAAD,UVM | KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000247903.1 | ENST00000500632.1 | 126 | 6 | 386 |
|
