 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ADH5,PEX2,HELQ,LARS1,OXNAD1,AP3B1,MCEE,C1orf56,PPID,GRPEL1,TRUB2,RNF170,HLTF,FBXL17,FAM120AOS,PIGP,SLC25A12,PLRG1,SLC25A40,WDR5B,FAM200A,LZTFL1,KBTBD3,TMEM38A,MIPEP,USP30,GMPR2,RPAP1,UFSP2,SLC2A11,GKAP1,GPRASP2,PPP1R3E,SDHC,FAM104B,THEM6,KIF16B,CYB5D2,RCCD1,GZF1,TRIM68,LYPLAL1,CASC3,FAN1,ABHD14B,TMEM231,TIMMDC1,C3orf18,ST13,MTFMT,ACADM,CEP19,IFT172,SLC35A5,XPNPEP3,MRPS35,USP46,AP1G1,NBR1,CBX7,PRMT9,CCDC28A,ZFP62,ZBED8,COQ7,C22orf39,COQ6,DNAJA2,GPN3,SBNO1,FAM229B,ETFDH,DHX29,INTS2,MRPS27,ADHFE1,SLU7,UQCC1,LRTOMT,TIMM10B,ZNF14,RMI1,SCRN3,FAM114A2,THEM4,L2HGDH,FITM2,ATG2B,SPCS1,DMAC2L,COMMD8,TMEM50B,MKRN2,SKP1,KAT14,EAPP,AKAP1,TMEM248,DNAJA3,JKAMP,LONRF1,CFAP53,ZC2HC1C,ISCA2,SDHD,TMEM168,HIBADH,OARD1,IST1,PIK3R4,TMEM254,FAM172A,CEP20,TRMO,SNX19,MED7,AMFR,NFU1,PNPLA4,NICN1,HSP90AA1,PPWD1,RNF14,NDRG3,NR1D2,LAMTOR3,KIAA1191,PIGH,MYO10,COX16,DDX24,TCAIM,PHF7,COG8,KRIT1,COG5,EXD2,TMX2,RIOX2,SCO1,VPS50,TRNT1,AIMP1,LANCL1,KIAA1143,PELO,ODR4,UNG,PDP2,IFT74,AP5M1,SPACA9,NAP1L2,TMEM116,SETD9,OGDHL,GRPEL2,NUDT12,SLC25A46,ANAPC13,HSPA9,TCTA,TMEM251,SLC39A9,MSH3,UTP14C,BBS2,NEK9,TRMT2B,FBXO8,CREBRF,C4orf33,ZFYVE1,DTWD2,METTL16,DZIP3,GATB,PXMP4,CCDC125,TMEM186,KCTD18,NUBPL,PPM1K,PNPO,CETN3,BHLHB9,PEX11A,USP40,TRAPPC13,SMIM14,FTCDNL1,ATG14,ZSWIM1,MTIF2,TSNARE1,NIT1,HEMK1,ZFR,TMEM199,MED29,C18orf32,GPBP1,LSG1,RAD50,SLC23A2,AKTIP,DCTN4,LYRM7,TXNRD3,MKKS,KIF3A,ALDH9A1,TYW1,SCAMP1,RBBP9,PSME3IP1,ANKMY2,SRR,RAB29,PRKAG1,HARS2,TFDP2,NADK2,HPS4,LDHB,UNC119B,AMZ2,TMEM187,DET1,NCOA2,SAR1B,C11orf1,NMNAT3,PREPL,CEP63,TMEM17,ATPSCKMT,NIPSNAP1,METTL15,TTC5,DTD2,DBR1,SPIN3,FOXRED1,NME5,IFT88,COX11,ZCWPW1,SDHA,KLHDC1,TK2,PFKFB2,TTC30B,DHFR2,DCAKD,EFCAB7,PDPK1,PPM1A,ERLIN2,GFM2,ZMYND12,SH3BGRL,N6AMT1,TCEAL1,MRPS30,COX18,PTCD3,SERP1,ACBD4,TIGD6,TRAPPC11,NAPEPLD,NDUFB5,CAMK2G,MRPL35,TUBGCP5,TBCK,BBS10,MLH3,RBM43,SETD6,TTC30A,LNPEP,SH3BGR,CDC23,TRAM1L1,COMMD10,ANKRD46,SUOX,PARP3,ZHX3,SAP30L,PHAX,CDNF,TMEM128,HEXIM2,MRPS22,CEP44,DYNLL2,DBT,CWC27,GON7,FBXW11,UQCRC2,USP19,ANKRA2,MMACHC,TMEM161B,CCDC121,KRR1,PEX3,NFXL1,HLCS,HOMEZ,DCUN1D1,METTL6,UBL3,FAM161B,MOCS2,SLC49A4,RBBP5,ABHD10,FECH,FASTKD5,GIN1,PARP8,LIPT1,NDUFA5,NUDCD2,BCL2L13,COA5,CDC14B,BRD8,NIF3L1,ERCC8,STXBP3,COQ9,THNSL1,SNX13,PMS2,MTREX,USP16,XPA,PCBD2,ETFRF1,ADAT1,SMIM19,RAD17,ADAL,TIMM21,FPGT,CHCHD4,DSTYK,DNAJC30,TADA1,TATDN3,HDDC3,EIF5,TMEM267,RRNAD1,AIMP2,AASDH,PLA2G12A,ARV1,ACO2,RPRD1A,TOR1AIP1,CAAP1,NKIRAS1,HACL1,LARP7,PTCD2,ACAT1,C2orf42,ISCA1,GOLGA1,SIAE,UBE2D4,OSGEPL1,PEX1,C1GALT1C1,DNAJB9,FAM217B,CHTF8,TFB2M,TRIM23,AKAP10,TMEM99,LDHD,WDSUB1,TMEM143,PRIMPOL,TADA2B,THAP9,MRNIP,THAP6,TMEM129,DGLUCY,C12orf66,KLHL12,RSBN1L,MRPS33,BBS12,LIAS,GNPDA2,SDR39U1,TRIP11,NEK1,PXK,PNPLA8,IFT46,COX15,ARSK,WDR31,WDR61,RWDD2B,FUNDC1,AP3S2,TRIM52,DUS4L,NFS1,HADHB,CERT1,SPIN2B,ATP6V1E2,LYRM1,LMBR1,MTX3,TMEM230,CBR4,LMBRD2,RBM48,GOLPH3L,BOLA1,CPEB3,BCDIN3D,CRBN,SDAD1,CAB39L,TUBD1,PDCD6,UTP15,C17orf80,PCMTD1,MRPS14,RNF185,DCAF11,TTC33,TBC1D5,ASB8,TRMT10A | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | C22orf39,ATP6V0E1,OSGEPL1,FOPNL,HSPA9,COX16,ANKRD46,METTL6,FAN1,PPID,TRIM23,ANKRA2,FAM173B,C3orf18,CPEB3,RPAP1,KIF16B,HEMK1,IST1,FAM114A2,RNF185,NICN1,NIPSNAP1,MBLAC2,DHX29,PDCD6,NMNAT3,ZNF14,ADAT1,FAM185A,NME5,FECH,SETD6,ST13,MRPS27,HOMEZ,PMS2,TATDN3,C17orf80,NFU1,CALCOCO2,C12orf66,ZC3H6,MINA,CHGB,WDR31,SDR39U1,MFN1,DBR1,FOXRED1,ERCC4,GPN3,SKIV2L2,PIK3R4,ZSWIM1,CBX7,NDUFB5,EXD2,TRMO,CIPC,LARS,IFT74,TBCK,NUDT7,ELAC1,WDR5B,XPNPEP3,C14orf142,UTP15,AKAP1,PRMT9,MAGEF1,LANCL1,UFSP2,SDHD,CDC23,RWDD2B,ABHD14B,PCCB,SPIN2B,CWC27,BCL2L13,SPIN3,MTIF2,PIGV,AIMP1,AMZ2,TRAM1L1,BCAS3,FASTKD5,ARIH2OS,SH3BGRL,PCBD2,TMEM50B,MIPEP,TIMMDC1,NUDT12,MRPS36 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | BAX,C11orf24,TWF2,SLC2A3,PLK3 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TAGLN2,CLIC1,FXYD5,SH3BGRL3,CMTM3,TWF2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000247796 | ENST00000499459 | exon_skip_361434 | chr21:25997359-25997416 | -9.88 | -0.1830 | APP | ENST00000346798 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000247796 | ENSG00000062194 | GPBP1 | ENSG00000198690 | FAN1 | 5 | ACC,KICH,PCPG,SARC,TGCT | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000198690 | FAN1 | 5 | ACC,KICH,PCPG,TGCT,THCA | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000171497 | PPID | 5 | ACC,KICH,PCPG,TGCT,THCA | | ENSG00000247796 | ENSG00000062194 | GPBP1 | ENSG00000113595 | TRIM23 | 5 | ACC,KICH,PCPG,SARC,TGCT | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000113595 | TRIM23 | 5 | ACC,KICH,LGG,PCPG,TGCT | | ENSG00000247796 | ENSG00000062194 | GPBP1 | ENSG00000164331 | ANKRA2 | 5 | KICH,OV,PCPG,SARC,TGCT | | ENSG00000247796 | ENSG00000062194 | GPBP1 | ENSG00000067248 | DHX29 | 6 | ACC,KICH,OV,PCPG,SARC,TGCT | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000067248 | DHX29 | 5 | ACC,KICH,PCPG,TGCT,THCA | | ENSG00000247796 | ENSG00000062194 | GPBP1 | ENSG00000113048 | MRPS27 | 6 | ACC,KICH,OV,PCPG,SARC,TGCT | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000113048 | MRPS27 | 6 | ACC,KICH,LGG,PCPG,TGCT,THCA | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000174206 | C12orf66 | 5 | ACC,KICH,PCPG,TGCT,THCA | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000188177 | ZC3H6 | 6 | ACC,KICH,LGG,PCPG,TGCT,THCA | | ENSG00000247796 | ENSG00000062194 | GPBP1 | ENSG00000039123 | MTREX | 6 | ACC,KICH,OV,PCPG,SARC,TGCT | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000196981 | WDR5B | 5 | ACC,DLBC,PCPG,TGCT,THCA | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000196236 | XPNPEP3 | 5 | ACC,KICH,LGG,TGCT,THCA | | ENSG00000247796 | ENSG00000196670 | ZFP62 | ENSG00000112874 | NUDT12 | 5 | KICH,LGG,PCPG,TGCT,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000247796.2 | ENST00000502171.2 | 33 | 188 | 289 | | ENSG00000247796.2 | ENST00000512301.1 | 119 | 1290 | 1649 | | ENSG00000247796.2 | ENST00000499459.2 | 93 | 2 | 283 |
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