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lncRNA: ENSG00000247271

Summary for ZBED5-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000247271
	Gene symbol	ZBED5-AS1
	Gene name	ZBED5 antisense RNA 1
	HGNC	48646
	Entrez ID	729013
	Gene type	antisense
	Synonyms	ZBED5-AS1\|11p15.4
	UniProtAcc

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Structure and expression level for ZBED5-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000247271	6.729281e+02	-1.082524e+00	6.698957e-02	-1.615959e+01	9.720000e-59	3.240000e-57	DOWN	KIRC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000247271	3.525814e-01	1.752634e-02	CHOL	1.934337e-02
ENSG00000247271	-4.206257e-01	4.057703e-05	KICH	7.623564e-05
ENSG00000247271	-3.390863e-01	2.738454e-09	KIRP	2.698702e-08

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lncRNA-Protein interaction for ZBED5-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000078487	ZCWPW1	45.97	93.0992	Q9H0M4	Epi	NA
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000108799	EZH1	61.75	94.1983	Q92800	Epi	NA
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000166313	APBB1	55.5	91.9668	O00213	Epi	NA
ENSG00000247271	ENST00000529014	ZBED5-AS1	ENSG00000108799	EZH1	27.94	91.8468	Q92800	Epi	NA
ENSG00000247271	ENST00000529014	ZBED5-AS1	ENSG00000166313	APBB1	24.38	91.5766	O00213	Epi	NA
ENSG00000247271	ENST00000529014	ZBED5-AS1	ENSG00000149929	HIRIP3	12.83	90.6515	Q9BW71	Epi	NA
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000149929	HIRIP3	7.39	93.5615	Q9BW71	Epi	NA
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000171148	TADA3	1.18	94.0501	O75528	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000065029	ZNF76	13.57	93.3073	P36508	TF	NA
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000154957	ZNF18	4.88	91.2495	P17022	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000004534	RBM6	82.93	95.7442	P78332	RBP	NA
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000137776	SLTM	72.93	96.6783	Q9NWH9	RBP	eCLIP
ENSG00000247271	ENST00000529014	ZBED5-AS1	ENSG00000004534	RBM6	38.17	93.256	P78332	RBP	NA
ENSG00000247271	ENST00000529014	ZBED5-AS1	ENSG00000137776	SLTM	33.93	93.2088	Q9NWH9	RBP	eCLIP
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000100461	RBM23	9.93	94.1057	Q86U06	RBP	NA
ENSG00000247271	ENST00000529014	ZBED5-AS1	ENSG00000100461	RBM23	5.33	90.864	Q86U06	RBP	NA
ENSG00000247271	ENST00000501079	ZBED5-AS1	ENSG00000125970	RALY	5.13	90.9898	Q9UKM9	RBP	NA

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lncRNA-DNA interaction for ZBED5-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

CCDC65,GSTM3,KRCC1,RNF141,NDUFS3,FOXJ1,PRPSAP2,IFT22,TXNL4B,CIRBP,NUDT18,CMC2,ATP5MG,C1orf56,SIRT3,HMCES,HINT2,TDP2,PIR,TIMM17B,ISCU,TRAPPC12,PNKD,FAM120AOS,PIGP,PIGX,PIK3R3,STK16,WDR5B,TUBGCP6,HIRIP3,LZTFL1,ABITRAM,C6orf136,NMNAT1,TERF2IP,ZBED5,PMM1,VRK3,INPP5K,STK33,SVBP,GKAP1,KYAT3,MAPK8IP1,SUGP1,H2BC5,FAM104B,PSMD13,GTF2H5,SNX11,PPP1R2,ADD3,GLRX5,CYB5D2,RCCD1,CYSTM1,SKAP2,MPLKIP,PSENEN,SSU72,TMEM39B,BBIP1,DHX58,CBY1,ABHD14B,ACAD10,TIMMDC1,GABPB1,ORMDL3,WASHC3,ACYP1,ACADM,CEP19,CFAP298,XPNPEP3,GET1,FANCF,CBX7,CCDC28A,C17orf97,RUVBL1,HDHD3,C22orf39,COQ6,IQCG,ESS2,PIGZ,SPOUT1,PPP6C,MLH1,FAM229B,MRO,MRPL57,USP33,MARVELD2,ADHFE1,NXF1,TSSK6,KIF9,PAN2,C2orf76,LRTOMT,RMI1,NDUFB1,OAT,CZIB,SPCS1,DMAC2L,RPA3,TMEM50B,DPH3,TMEM14A,GABARAP,SVIP,ALKBH3,TMEM248,THOC7,RSPH1,CFAP53,PEX11B,ZC2HC1C,PCYT2,ISCA2,HIBADH,OARD1,TMEM254,TRMO,NDUFB3,DNALI1,DNAJC4,HMGCL,SLC25A20,SNRNP25,ATP2A3,NICN1,TMEM14B,NEK11,IP6K2,PPOX,ZC3H10,BBOF1,WDR53,IFTAP,ZMYND10,CYB561A3,SLC44A4,MRPL20,C9orf78,COX16,ASTE1,CNPPD1,C20orf96,TCAIM,C22orf46,PHF7,ACYP2,APBB1,SURF1,LPXN,ASF1A,C6orf52,AGA,COMMD9,CLN5,UNG,TMED8,IFT74,CD48,MRPL24,SPACA9,STYXL1,RPA2,MSRB1,TMEM116,TAF8,DNASE1L3,ELP4,ANAPC13,PRKCQ,TCTA,TMEM251,IFT80,RFWD3,TSNAXIP1,SPECC1L,METTL23,GLT8D1,PATZ1,ABTB1,TUSC2,C4orf33,CHRNB1,H2BC21,DENND6B,PEX11G,NUBPL,POLR2L,TSG101,BCL7B,TP53INP2,TATDN2,HEMK1,TMEM218,IFT20,TMEM199,ALKBH4,DMAC1,GSAP,PYURF,PLGRKT,SLC41A3,DRAM2,ZNF862,LRWD1,POP5,SYF2,ORAI3,SOD1,MKKS,ALDH9A1,EPM2AIP1,UBE2L3,LSM1,PSME3IP1,ANKMY2,SRR,RAB29,NDUFA6,UBXN11,HAGH,PHF5A,PTCD1,CCDC71,NHLRC4,SPEF1,SNAP29,NCAPH2,AKR7A2,HARBI1,RALY,TMEM187,MAPK10,DET1,MORN2,C11orf1,PEF1,ATPSCKMT,MDM1,SEM1,STMP1,RBM23,CDPF1,SLC14A1,ODAD4,DTD2,MKS1,LYSMD2,KIAA0895,C7orf26,NME5,C14orf119,C5orf49,NPRL2,ZCWPW1,TAF12,SNX17,DHFR2,MYCBP,CCDC115,ZMYND12,MORN5,HHLA3,MIEN1,LSM5,FAM167A,COQ4,CCDC32,DHRS12,ZMAT5,PBXIP1,SERP1,TXNDC12,SNU13,LRRC23,SNRPD3,NDUFB5,SAP18,PDCD2,PPP1R7,SPATA2,ELP6,SH3BGR,ARMH1,ERMARD,FAM117A,GEMIN6,SETD3,C9orf116,HIRA,CETN2,TMEM69,APOO,ACAA1,HEXIM2,MRPS22,STPG1,SCRN2,AAGAB,GON7,SMDT1,PSPH,ANKRD54,RASSF7,CCDC90B,VMAC,TAF10,DBNL,MEAF6,TMEM60,ZFYVE21,EPM2A,AMPD3,HSPBAP1,CENPS,OGG1,B3GALT4,RNFT1,CCDC96,PPM1M,UBA3,MOCS2,PPIL6,CERKL,TRAPPC3,UQCR10,SAYSD1,FAM234A,ARPC4,ABHD10,GIN1,SMIM29,NDUFA1,ABHD14A,PDE6D,NUDCD2,KLHL22,MICOS10,C14orf93,DPH7,AK7,GUCD1,ETFRF1,YPEL5,B9D2,SMIM19,RWDD2A,ADAL,IMMP1L,HSD17B10,CTNNBIP1,FPGT,SDSL,GEMIN8,NUDT16L1,TMEM167B,C15orf61,ODF2L,CYCS,ACOT13,IMP3,EAF2,PYGO2,RIBC1,NRF1,C16orf86,RRNAD1,AIMP2,RP11-523H20.5,LRRC28,PAAF1,MIF4GD,HSD17B8,MUTYH,BANF1,HSPA1L,GSTZ1,PYCR2,GORASP1,IFT27,SWSAP1,C2orf42,GOLGA1,PTPMT1,UBE2D4,MED31,CENPT,MDH1B,ATP6V0E2,VAMP2,DTNB,CHTF8,RBM4B,PPCS,TMEM99,LRRC46,ANAPC2,C21orf58,WDSUB1,PAFAH2,BIN1,COX17,TRAPPC14,AK8,MAL,EZH1,LIPT2,MPV17,TTLL1,GNB5,PARD6A,ING4,TMEM9B,MRPS33,THYN1,LIN52,IFT46,CNBP,WDR31,AKIP1,FAM228B,WDR61,RWDD2B,NDUFC1,PPP1R21,MTFR1L,ATP6V1E2,BBS9,NDUFA8,ZMAT1,COASY,STMN3,TMEM230,SPATA33,GSS,CBR4,ZNF18,TMA7,ITGAE,CYP2R1,H2AC6,SPAG16,DUSP28,YPEL3,RILPL2,TMEM11,NSMCE1,NDUFV3,NMRK1,DGCR6L,ALKBH5,BSCL2,SPSB2,RCBTB2,RNF185,FASTK,HSPB11,USP20,RABL2B,C1orf194,SIRT7,TRMT10A,MRFAP1L1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DPH7,C22orf39,C14orf93,UBB,UNG,APITD1,ZNHIT3,SNU13,ZNF18,LZTFL1,MEAF6,KIZ,RNF141,C20orf196,ZMAT1,HSDL2,PEX11G,COX16,PAAF1,LIPT2,RILPL2,COQ10A,MORN5,ASF1A,PIK3R3,EID2B,FAM173B,IMMP1L,HDHD3,VRK3,PLGRKT,PRKCQ,HSPBAP1,HEMK1,C1orf56,SPEF1,DGCR14,CCDC53,RNF185,NICN1,C9orf114,ING4,THAP7,COQ6,NSMCE1,RNFT1,VPS37D,TP53INP2,TAF12,MPLKIP,ATG4C,TATDN2,LRWD1,ALKBH4,C7orf43,NDUFB1,SHFM1,ZC3H6,TIMM17B,DNAJC4,TUSC2,MRPL24,C2orf42,COX17,TDP2,SIRT7,PYCR2,ATP6V0E2,DNASE1L3,CNBP,VMAC,HINT2,VAMP2,C6orf203,SLC25A14,WDR31,BANF1,HSD17B8,NDUFB5,INPP5K,SAYSD1,GSTK1,TRMO,IFT74,PPM1M,SNRPD3,FAM45A,B9D2,ACOT13,OAT,RFWD3,NUDT7,TSG101,PCYT2,C6orf52,NT5M,BBIP1,CMC1,EZH1,ELAC1,B3GALT4,GGA1,FAM234A,C14orf142,XPNPEP3,USP33,MAGEF1,AMPD3,GUCD1,RPA2,BSCL2,C21orf59,GABARAP,RWDD2B,ABHD14B,COMMD3,CD48,SPATA2,PTCD1,THOC7,CCDC65,PIGV,EPM2A,SLC25A35,HIRA,RCAN3,SLC25A38,TMEM248,ARIH2OS,RBM6,TMEM50B,NAA20,EAF2,NDUFA8,ERMARD,MDH1B,COPS6,MRFAP1L1,RWDD2A,CIRBP,MRPS36,RTN3

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ZBED5-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NOCT,DOCK6,NACC1,TRIO,DMWD,ACTN4,MTHFD1L,SFXN3,C19orf48,SEC23A,FASN,LDLR,AP3D1,RAI1,SHMT2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000247271	ENST00000530344	exon_skip_476181	chr7:73543547-73543644	-8.61	-0.1656	BCL7B	ENST00000223368	Frame-shift
ENSG00000247271	ENST00000530344	exon_skip_51046	chr10:73439871-73439901	-5.71	-0.2039	PPP3CB	ENST00000360663	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000247271	ENST00000530344	exon_skip_132524	chr16:2208209-2208334	-13.09	-0.1558	MLST8	ENST00000397124,ENST00000564088,ENST00000565250,ENST00000569417	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for ZBED5-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000247271	ENSG00000145029	NICN1	ACC,DLBC,KICH,KIRC,KIRP,LIHC,PAAD,THCA		KIRC
ENSG00000247271	ENSG00000066185	ZMYND12	BRCA,GBM,KICH,KIRC,KIRP,LIHC,THCA,UCEC		KIRC
ENSG00000247271	ENSG00000198270	TMEM116	BRCA,CHOL,GBM,KIRC,SARC,TGCT,THCA		KIRC
ENSG00000247271	ENSG00000248487	ABHD14A	BRCA,DLBC,ESCA,GBM,KICH,KIRC,KIRP,PAAD,TGCT,THCA		KIRC
ENSG00000247271	ENSG00000182512	GLRX5	CESC,KIRC,KIRP,THCA,THYM		KIRC
ENSG00000247271	ENSG00000065154	OAT	CHOL,DLBC,KIRC,THCA,UCS		KIRC
ENSG00000247271	ENSG00000065675	PRKCQ	CHOL,KICH,KIRC,THCA,THYM		KIRC
ENSG00000247271	ENSG00000102981	PARD6A	CHOL,GBM,KICH,KIRC,THYM		KIRC
ENSG00000247271	ENSG00000141469	SLC14A1	CHOL,GBM,KICH,KIRC,LGG		KIRC
ENSG00000247271	ENSG00000158006	PAFAH2	CHOL,COAD,GBM,KICH,KIRC,THCA,THYM		KIRC
ENSG00000247271	ENSG00000172005	MAL	CHOL,KICH,KIRC,THYM,UVM		KIRC
ENSG00000247271	ENSG00000204385	SLC44A4	CHOL,KICH,KIRC,KIRP,UCEC		KIRC
ENSG00000247271	ENSG00000106049	HIBADH	COAD,GBM,KICH,KIRC,KIRP,LIHC,READ,STAD,THCA		KIRC
ENSG00000247271	ENSG00000163687	DNASE1L3	DLBC,KICH,KIRC,TGCT,THCA		KIRC
ENSG00000247271	ENSG00000165698	SPACA9	DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,OV,PAAD,TGCT,THCA,THYM,UCEC,UCS,UVM		KIRC
ENSG00000247271	ENSG00000257108	NHLRC4	DLBC,KIRC,THYM,UCEC,UCS		KIRC
ENSG00000247271	ENSG00000060971	ACAA1	GBM,KICH,KIRC,LGG,SARC,THCA,THYM,UVM		KIRC
ENSG00000247271	ENSG00000117054	ACADM	GBM,KICH,KIRC,PAAD,TGCT,THCA		KIRC
ENSG00000247271	ENSG00000134042	MRO	GBM,KIRC,LGG,THCA,THYM		KIRC
ENSG00000247271	ENSG00000134202	GSTM3	GBM,KICH,KIRC,LGG,THCA		KIRC
ENSG00000247271	ENSG00000145088	EAF2	GBM,KICH,KIRC,LGG,TGCT,THYM		KIRC
ENSG00000247271	ENSG00000154319	FAM167A	GBM,KICH,KIRC,LGG,THCA,THYM		KIRC
ENSG00000247271	ENSG00000179152	TCAIM	GBM,KICH,KIRC,READ,TGCT		KIRC
ENSG00000247271	ENSG00000184831	APOO	GBM,KIRC,OV,PAAD,TGCT,THCA,THYM,UCEC		KIRC
ENSG00000247271	ENSG00000185250	PPIL6	GBM,KIRC,KIRP,LGG,THCA,UCEC,UCS		KIRC
ENSG00000247271	ENSG00000185437	SH3BGR	GBM,KIRC,LGG,TGCT,THCA		KIRC
ENSG00000247271	ENSG00000109339	MAPK10	KICH,KIRC,KIRP,PAAD,THCA		KIRC
ENSG00000247271	ENSG00000112425	EPM2A	KICH,KIRC,LGG,THCA,THYM		KIRC
ENSG00000247271	ENSG00000117280	RAB29	KICH,KIRC,LGG,SARC,TGCT		KIRC
ENSG00000247271	ENSG00000125375	DMAC2L	KICH,KIRC,PAAD,THCA,UCEC,UCS		KIRC
ENSG00000247271	ENSG00000140057	AK7	KICH,KIRC,KIRP,OV,UCEC		KIRC
ENSG00000247271	ENSG00000147576	ADHFE1	KICH,KIRC,KIRP,LGG,SARC		KIRC
ENSG00000247271	ENSG00000152939	MARVELD2	KICH,KIRC,KIRP,THCA,UCS		KIRC
ENSG00000247271	ENSG00000184678	H2BC21	KICH,KIRC,TGCT,THCA,THYM,UVM		KIRC
ENSG00000247271	ENSG00000205659	LIN52	KICH,KIRC,PAAD,TGCT,THYM		KIRC
ENSG00000247271	ENSG00000171130	ATP6V0E2	KIRC,LIHC,PAAD,SARC,THCA		KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000247271	ENSG00000065029	ZNF76	ENSG00000130023	ERMARD	5	CHOL,ESCA,KICH,KIRP,PAAD

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000247271	ENST00000501079	SFXN3	ENSG00000107819	ENST00000489434	-0.1037	632	KIRC	-
ENSG00000247271	ENST00000501079	DOCK6	ENSG00000130158	ENST00000587734	-0.5950	163	KIRC	-
ENSG00000247271	ENST00000529014	SHMT2	ENSG00000182199	ENST00000557269	-0.1374	349	KIRC	-
ENSG00000247271	ENST00000529014	SHMT2	ENSG00000182199	ENST00000553474	-0.1036	266	KIRC	-
ENSG00000247271	ENST00000529014	SHMT2	ENSG00000182199	ENST00000554604	-0.1416	349	KIRC	-
ENSG00000247271	ENST00000529014	SFXN3	ENSG00000107819	ENST00000489434	-0.1407	369	KIRC	-
ENSG00000247271	ENST00000529014	DOCK6	ENSG00000130158	ENST00000294618	-0.1279	330	KIRC	-
ENSG00000247271	ENST00000529014	DOCK6	ENSG00000130158	ENST00000587734	-0.5950	730	KIRC	-
ENSG00000247271	ENST00000530344	SHMT2	ENSG00000182199	ENST00000557487	-0.1825	1	KIRC	-
ENSG00000247271	ENST00000530344	SHMT2	ENSG00000182199	ENST00000414700	-0.1825	1	KIRC	-
ENSG00000247271	ENST00000530344	SHMT2	ENSG00000182199	ENST00000557348	-0.1012	96	KIRC	-
ENSG00000247271	ENST00000530344	SHMT2	ENSG00000182199	ENST00000553474	-0.1825	1	KIRC	-
ENSG00000247271	ENST00000530344	DOCK6	ENSG00000130158	ENST00000294618	-0.1091	167	KIRC	-
ENSG00000247271	ENST00000530344	DOCK6	ENSG00000130158	ENST00000587734	-0.5657	109	KIRC	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000247271.5	ENST00000501079.4	85	2273	2016
ENSG00000247271.5	ENST00000529014.4	92	676	954
ENSG00000247271.5	ENST00000530344.1	132	739	341

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential