 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SRRT,TBRG4,GART,DNMT1,TTF2,RASSF1,NUP43,TACC3,NOA1,DCLRE1B,ERICH1,CNOT9,METAP1,BIN3,PPAT,POLR3D,MAK16,SPATA5L1,LMNB1,CDCA5,CASP2,BZW2,SNRPA,TIMELESS,NUSAP1,PPP2CB,ELP3,CHTOP,TFAP4,MTA2,FANCA,EZH2,RPAP1,PTCD3,MRM1,AGPAT5,DDX54,GTPBP3,KAT2A,SARAF,CHAF1B,POLR3K,XPO7,RCCD1,RNPS1,KCTD9,NLE1,DCTN6,SSRP1,FANCD2,KARS1,NOP14,ESCO2,LIN54,OIP5,NOC2L,ENTPD4,MTFMT,C11orf98,TNFRSF10B,CLN6,IKBKB,INO80,SART3,ZWINT,TTI2,TUBGCP4,POLR2D,IRF2,COX15,ALKBH2,ZFYVE19,WDR76,GTF2E2,WRN,MCM3,NR2C2AP,PATL1,MRPS27,CENPM,TMPO,INTS9,SMG9,TNKS,CCDC25,BUB3,TNFRSF10A,CNOT7,HROB,TK1,TRIM35,CCAR2,PBK,DMTN,MFHAS1,ATXN2L,TYMS,RAD51,CHAF1A,SHMT2,KRTCAP3,FARSA,PALB2,CDCA2,TIPIN,DNAJA3,NOC3L,MCPH1,RCC2,VPS37A,LIG1,DNAJC9,LONRF1,MCM4,CCNF,TONSL | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | MTFMT,RRP7BP,TK1,PCM1,INTS9,MAK16,SMG9,ZWINT,NOC3L,FAM160B2,POLR3D,REEP4,NR2C2AP,NLE1,NUSAP1,FANCD2,CENPM,TTI2,OIP5,VPS37A,LEPROTL1,RNPS1,KARS,TFAP4,TNFRSF10A,EZH2,DMTN,TNFRSF10B,FANCA,C17orf53,KAT2A,PATL1,PPP2R2A,DNMT1,TUBGCP4,MRM1,CCNB2,ALKBH2,GSR,CNOT7,RPAP1,GTF2E2,PLK4,TIMELESS,POLR2D | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ELL2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000246582 | ENST00000522600 | exon_skip_44998 | chr10:110132304-110132400 | -12.88 | -0.1571 | ADD3 | ENST00000356080 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000246582 | ENST00000522600 | exon_skip_496416 | chr9:70346604-70346649 | -7.56 | -0.8400 | SMC5 | ENST00000361138 | In-frame | | ENSG00000246582 | ENST00000522600 | exon_skip_48296 | chr10:26755654-26755741 | -13.91 | -0.1987 | ABI1 | ENST00000376142 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000246582 | ENSG00000104689 | TNFRSF10A | BLCA,CESC,CHOL,COAD,ESCA,HNSC,OV,PAAD,READ,STAD | CESC | | | ENSG00000246582 | ENSG00000120889 | TNFRSF10B | BLCA,CESC,CHOL,COAD,ESCA,HNSC,OV,PAAD,READ,STAD | CESC | | | ENSG00000246582 | ENSG00000168078 | PBK | BLCA,CESC,COAD,ESCA,HNSC,PAAD,READ,STAD | CESC | | | ENSG00000246582 | ENSG00000168495 | POLR3D | BLCA,CESC,CHOL,COAD,ESCA,HNSC,OV,PAAD,READ,STAD | CHOL | | | ENSG00000246582 | ENSG00000184661 | CDCA2 | BLCA,CESC,COAD,ESCA,HNSC,READ,STAD | CESC | | | ENSG00000246582 | ENSG00000083093 | PALB2 | CESC,CHOL,ESCA,HNSC,PAAD | CESC | | | ENSG00000246582 | ENSG00000092470 | WDR76 | CESC,CHOL,COAD,DLBC,ESCA,HNSC,STAD | CESC,CHOL | | | ENSG00000246582 | ENSG00000104738 | MCM4 | CESC,CHOL,ESCA,HNSC,STAD | CESC,CHOL | | | ENSG00000246582 | ENSG00000111602 | TIMELESS | CESC,CHOL,COAD,ESCA,HNSC | CESC | | | ENSG00000246582 | ENSG00000116830 | TTF2 | CESC,CHOL,ESCA,HNSC,STAD | CESC,CHOL | | | ENSG00000246582 | ENSG00000118655 | DCLRE1B | CESC,CHOL,ESCA,HNSC,STAD | CESC | | | ENSG00000246582 | ENSG00000120802 | TMPO | CESC,CHOL,ESCA,HNSC,STAD | CESC | | | ENSG00000246582 | ENSG00000137804 | NUSAP1 | CESC,CHOL,COAD,ESCA,HNSC,PAAD,STAD | CESC,CHOL | | | ENSG00000246582 | ENSG00000159131 | GART | CESC,ESCA,HNSC,PAAD,STAD | CESC | | | ENSG00000246582 | ENSG00000167670 | CHAF1A | CESC,CHOL,COAD,HNSC,STAD | CESC,CHOL | | | ENSG00000246582 | ENSG00000171320 | ESCO2 | CESC,COAD,ESCA,HNSC,READ,STAD | CESC | | | ENSG00000246582 | ENSG00000213551 | DNAJC9 | CESC,CHOL,COAD,ESCA,HNSC,STAD | CESC,CHOL | | | ENSG00000246582 | ENSG00000051180 | RAD51 | CHOL,COAD,DLBC,ESCA,HNSC,STAD | CHOL | | | ENSG00000246582 | ENSG00000073536 | NLE1 | CHOL,DLBC,ESCA,HNSC,STAD | CHOL | | | ENSG00000246582 | ENSG00000105486 | LIG1 | CHOL,COAD,ESCA,HNSC,PAAD | CHOL | | | ENSG00000246582 | ENSG00000105771 | SMG9 | CHOL,COAD,ESCA,HNSC,PAAD | CHOL | | | ENSG00000246582 | ENSG00000106144 | CASP2 | CHOL,ESCA,HNSC,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000106462 | EZH2 | CHOL,ESCA,HNSC,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000112118 | MCM3 | CHOL,COAD,DLBC,HNSC,STAD | CHOL | | | ENSG00000246582 | ENSG00000113368 | LMNB1 | CHOL,COAD,ESCA,HNSC,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000125319 | HROB | CHOL,COAD,HNSC,PAAD,READ | CHOL | | | ENSG00000246582 | ENSG00000136261 | BZW2 | CHOL,DLBC,ESCA,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000157992 | KRTCAP3 | CHOL,ESCA,HNSC,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000159259 | CHAF1B | CHOL,COAD,HNSC,READ,STAD | CHOL | | | ENSG00000246582 | ENSG00000160949 | TONSL | CHOL,ESCA,HNSC,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000167900 | TK1 | CHOL,COAD,HNSC,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000179051 | RCC2 | CHOL,COAD,ESCA,HNSC,PAAD,STAD | CHOL | | | ENSG00000246582 | ENSG00000184162 | NR2C2AP | CHOL,DLBC,ESCA,HNSC,PAAD | CHOL | | | ENSG00000246582 | ENSG00000187741 | FANCA | CHOL,COAD,ESCA,HNSC,READ,STAD | CHOL | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000246582 | ENST00000517774 | ELL2 | ENSG00000118985 | ENST00000508757 | -0.3904 | 4 | - | CHOL | | ENSG00000246582 | ENST00000500853 | ELL2 | ENSG00000118985 | ENST00000508757 | -0.2288 | 441 | - | CHOL | | ENSG00000246582 | ENST00000522600 | ELL2 | ENSG00000118985 | ENST00000508757 | -0.2288 | 28 | - | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000246582.2 | ENST00000517774.1 | 53 | 391 | 552 | | ENSG00000246582.2 | ENST00000500853.1 | 163 | 489 | 1 | | ENSG00000246582.2 | ENST00000522600.1 | 150 | 905 | 1357 |
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