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lncRNA: ENSG00000246273

Summary for SBF2-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000246273
	Gene symbol	SBF2-AS1
	Gene name	SBF2 antisense RNA 1
	HGNC	27438
	Entrez ID	283104
	Gene type	antisense
	Synonyms	SBF2-AS1\|11p15.4
	UniProtAcc

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Structure and expression level for SBF2-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000246273	2.546883e+02	1.255968e+00	3.225202e-01	3.894229e+00	9.850000e-05	4.306720e-04	UP	CHOL
ENSG00000246273	1.677725e+03	2.263517e+00	2.033999e-01	1.112841e+01	9.130000e-29	3.130000e-27	UP	KICH
ENSG00000246273	3.296650e+02	1.512868e+00	1.375991e-01	1.099475e+01	4.050000e-28	3.960000e-27	UP	LUSC
ENSG00000246273	2.382706e+02	1.302499e+00	1.012304e-01	1.286668e+01	6.930000e-38	2.090000e-36	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000246273	4.259726e-01	3.528551e-03	CHOL	4.848875e-03
ENSG00000246273	4.568490e-01	6.789752e-06	KICH	1.491155e-05
ENSG00000246273	3.010915e-01	9.579250e-14	LUAD	1.020833e-12

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lncRNA-Protein interaction for SBF2-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000110851	PRDM4	80.87	93.8164	Q9UKN5	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000104320	NBN	76.7	94.4677	O60934	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000118058	KMT2A	75.88	98.3537	Q03164	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000085224	ATRX	73.03	98.027	P46100	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000077684	JADE1	66.93	94.647	Q6IE81	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000171634	BPTF	66.53	98.0717	Q12830	TF,Epi	NA
ENSG00000246273	ENST00000525636	SBF2-AS1	ENSG00000118058	KMT2A	59.21	90.8047	Q03164	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000146872	TLK2	54.11	94.5914	Q86UE8	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000015153	YAF2	48.78	90.8529	Q8IY57	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000139620	KANSL2	4.71	93.2901	Q9H9L4	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000048649	RSF1	95.91	96.737	Q96T23	Epi	Predict
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000106443	PHF14	92.89	95.674	O94880	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000171681	ATF7IP	86.44	97.1878	Q6VMQ6	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000198730	CTR9	84.24	95.0323	Q6PD62	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000169375	SIN3A	83.61	95.8597	Q96ST3	Epi	Predict
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000143970	ASXL2	73.16	94.1809	Q76L83	Epi	Predict
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000189079	ARID2	64.78	93.2623	Q68CP9	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000114861	FOXP1	62.22	95.0332	Q9H334	TF,Epi	ChIP-seq
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000173889	PHC3	61.32	93.7436	Q8NDX5	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000205531	NAP1L4	22.66	91.856	Q99733	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000132275	RRP8	10.22	94.2065	O43159	Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000136450	SRSF1	4.88	91.2092	Q07955	RBP,Epi	eCLIP,iCLIP,PAR-CLIP,Scan,pipeline,widely,used,MATCH,algorithm

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000102189	EEA1	94.78	96.8798	Q15075	TF	Predict
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000110851	PRDM4	80.87	94.1083	Q9UKN5	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000118058	KMT2A	75.88	98.4357	Q03164	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000171634	BPTF	66.53	98.1625	Q12830	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000167232	ZNF91	66.2	97.1051	Q05481	TF	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000189079	ARID2	64.78	93.3935	Q68CP9	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000114861	FOXP1	62.22	95.2397	Q9H334	TF,Epi	ChIP-seq
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000146587	RBAK	62.07	95.7511	Q9NYW8	TF	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000114439	BBX	60.49	96.1745	Q8WY36	TF	NA
ENSG00000246273	ENST00000525636	SBF2-AS1	ENSG00000118058	KMT2A	59.21	90.2889	Q03164	TF,Epi	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000196670	ZFP62	58.11	95.5624	Q8NB50	TF	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000164631	ZNF12	45.72	95.1757	P17014	TF	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000186660	ZFP91	32.04	96.4656	Q96JP5	TF	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000141646	SMAD4	22.31	93.3141	Q13485	TF	ChIP-seq
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000109381	ELF2	14.5	93.8742	Q15723	TF	ChIP-seq
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000136936	XPA	13.26	90.7736	P23025	TF	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000144161	ZC3H8	7.75	92.5187	Q8N5P1	TF,RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000085274	MYNN	2.77	94.3654	Q9NPC7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000246273	ENST00000527406	SBF2-AS1	ENSG00000136381	IREB2	54.0	90.3022	P48200	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000056097	ZFR	96.06	95.9513	Q96KR1	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000121057	AKAP1	78.61	93.3261	Q92667	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000161813	LARP4	52.37	93.8495	Q71RC2	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000140694	PARN	44.72	94.8452	O95453	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000165832	TRUB1	43.73	90.5725	Q8WWH5	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000102081	FMR1	33.49	94.9054	Q06787	RBP	eCLIP
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000147274	RBMX	31.19	93.0642	P38159	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000137449	CPEB2	25.5	93.7252	Q7Z5Q1	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000155858	LSM11	17.78	94.1183	P83369	RBP	ENCODE
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000139168	ZCRB1	12.91	92.734	Q8TBF4	RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000144161	ZC3H8	7.75	92.7926	Q8N5P1	TF,RBP	NA
ENSG00000246273	ENST00000498905	SBF2-AS1	ENSG00000136450	SRSF1	4.88	92.7937	Q07955	RBP,Epi	eCLIP,iCLIP,PAR-CLIP,Scan,pipeline,widely,used,MATCH,algorithm

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lncRNA-DNA interaction for SBF2-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

SPAG9,RNF141,HELQ,COPS2,XRN1,CSNK1G3,ATL2,ATP6V1A,SPIRE1,RB1CC1,RBM7,CHM,TMEM106C,SLF2,TMEM184C,DCK,UTP18,WWP1,STIM1,FAM120AOS,PIGW,PIGX,IRAK4,METTL5,NBN,SLC25A40,WDR5B,SNAPC1,FAM200A,RSF1,STRBP,POLR2K,ZBED5,ARL1,HUS1,TBK1,SIN3A,STRN3,SPTY2D1,ARCN1,FAM220A,RCCD1,CBX3,NCBP1,PPTC7,TRIM68,MPLKIP,LYPLAL1,ANAPC10,RPAP3,TRIM37,ITGB3BP,WASHC3,MTFMT,SYPL1,MSH6,HCFC2,RSRC2,MRPS35,NPAT,FANCF,NEMP1,ZFP62,ZBED8,COQ7,C18orf21,GUF1,GPN3,PHC3,GTF2H1,DHX29,RSRC1,C6orf62,PRELID3B,TIMM10B,CHEK1,LSM11,XPO1,TMEM126B,MAN2A1,DCLRE1A,CLCN3,DMAC2L,PFN2,SP3,PIP4P2,PIK3C2A,BFAR,SVIP,PALB2,AKAP1,CCDC34,DNAJC24,ALKBH3,PGGT1B,ATF7IP,TMED2,DNAJA3,RCHY1,CUL3,RWDD4,SDHD,CEP20,PDCD10,BRAP,COPB1,MED7,KIF18A,TRAF6,CEP57,TMEM14B,MIB1,HOOK3,FGD4,METAP1,MALSU1,VEZF1,RBM27,ATG12,NEXN,LAMTOR3,ICE2,ENOPH1,TMED4,MOB1B,PGRMC2,FAM111A,ARHGAP18,GCFC2,ACAP2,SWAP70,ODR4,KIF13B,OPA1,TMEM116,LYSMD3,FEN1,VAPA,GRPEL2,KANSL2,NUDT12,ELP4,PSMD14,ATP7A,DNAJB14,PPA2,GGCT,GGNBP2,RFC4,LIN54,C17orf75,FBXO8,FBXO3,CREBRF,ATP6V1C1,CEP70,SLC38A1,ZC3H8,THAP1,AKT3,TRAPPC6B,ANKRD49,COA1,NUBPL,BOD1L1,CETN3,GOLGA4,TRAPPC13,TSG101,FOXP1,CIAO2A,BCL7B,CHRAC1,MYNN,MTIF2,TRIM44,RPE,NCKAP1,ZFR,SCAF11,NDUFA12,BTBD10,PDHX,C18orf32,DIABLO,NDUFAF7,RAD50,ZFAND6,ARHGAP12,SBF2,LPP,ARPP19,NCR3LG1,VPS54,LYRM7,SMAD4,UEVLD,MKKS,SCAMP1,PPP3CA,ANKMY2,NAP1L4,NDUFA6,PRKAG1,DHRS7,MCPH1,AMZ2,CUL4B,OSGIN2,C11orf1,AFG3L2,UBE2B,GRSF1,NAA15,FAM214A,METTL15,ARID2,LACTB2,DARS1,SEC24B,DTD2,C12orf29,RBBP8,PICALM,CCDC6,FOXRED1,DDX52,GTF3C3,AFTPH,GATAD1,POLE2,PPM1A,RPS6KB1,PPP4R3B,CNOT4,TATDN1,TCEAL1,CCDC50,MRPS30,COX18,RAB40B,NUP37,RRM1,EEA1,SAV1,ZNF91,ZFP91,NUP160,ST7,CSTF3,ABCC4,NDUFB5,PURB,MRPL35,CEBPZOS,BBS10,ARL5A,POLI,PTS,KIF21A,PRIM1,LNPEP,PGAP2,ITSN2,TMEM41B,VPS41,E2F6,PABIR2,TMEM128,CEP44,RBM41,WBP11,SRPK2,TLK1,UQCRC2,TMEM263,ANKRA2,PARN,CCDC90B,DMRT2,POLK,TMEM60,TMEM161B,CCDC121,KRR1,AMPD3,YAE1,NSMCE2,DSG2,UBL3,SAAL1,UHRF1BP1L,BTG3,SLBP,CRCP,VSIG10,TMEM68,IDH3A,ABHD10,FASTKD2,ELF2,NDUFA5,NUDCD2,SPOPL,TMEM65,BCL2L13,DSN1,SACM1L,SNX13,TMX4,MAPKAPK5,KMT2A,BROX,XPA,PCBD2,RAD17,CISD2,AVL9,IMMP1L,ME3,CEBPZ,FPGT,PIGA,CPEB2,SLC29A2,TAF9B,INTS14,CYCS,TATDN3,SCFD1,PDZD8,POT1,SCRN1,FAM210A,COQ5,GNA13,NSRP1,YIPF5,PLA2G12A,ARV1,PPP1CC,ATRX,RPRD1A,NDUFA4,C2CD5,PRKRA,MED28,DDX59,ISCA1,GYG1,DCAF16,PTPMT1,ITPR2,MINDY2,RICTOR,ARL6,IAH1,MTPN,DPP8,MMGT1,FAM76B,CCDC43,YAF2,TRIM23,AKAP10,RBMX,VPS29,KCTD9,WDSUB1,ORC4,FBXO33,MYO19,ANKRD40,PRIMPOL,PRDM4,C2orf69,THAP9,RAB22A,THAP6,STK17A,FBXL5,KLHL12,AQR,TMEM9B,FMR1,RRP8,LIAS,ASXL2,STRN,C8orf33,CTDSPL2,ELOVL7,TRPM7,PXK,MCUR1,PNPLA8,SMC6,TRAPPC8,MAP4K3,COX15,CPSF2,AKIP1,TMED7,ELK4,FUNDC1,TWF1,CRIM1,ATL3,CERT1,FBXO11,DLAT,LMBR1,TAX1BP1,ATAD1,ABHD3,NPTN,ITPR1,USO1,CYP2R1,UBE2D3,PSMC3IP,TSNAX,PUM2,OXCT1,IMPA1,SLC30A9,RNF169,CUL2,DPH6,C17orf80,ARMC1,TRA2B,PIAS2,WASL,COLCA2,TAB3,CLIP1,TRAPPC2,ATF2

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

AMPD3,MOB1B,ATF7IP,WEE1,FAM111A,RBBP8,SEC24B,FAM220A,GPN3,CBL,UHRF1BP1L,RINT1,TMEM263,GNA13,E2F6,SLK,NDUFB5,AKAP1,LACTB2,FAM122B,LRRC57,C2CD5,C17orf75,DDX52,ATL3,MBNL1,RNF169,FAM96A,MTIF2,BCL2L13,SRPK2,CCDC121,AMZ2,TSG101,PTS,MYNN,COA1,PMPCB,PRKRA,WDR43,TLK1,CHRAC1,TMED2,PCBD2,MPLKIP,FAIM,CUL3,TRIM23,ATAD1,ARL5A,PRIM1,MED28,NEXN,UBE2D3,NUDT12,NEMP1,ABCC4,MRPL42,FBXO11

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for SBF2-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

ATP13A2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for SBF2-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000246273	ENSG00000150938	CRIM1	CESC,CHOL,KIRP,LAML,UVM	CHOL
ENSG00000246273	ENSG00000011566	MAP4K3	CHOL,COAD,HNSC,KIRC,KIRP,SKCM,UVM	CHOL
ENSG00000246273	ENSG00000015153	YAF2	CHOL,COAD,KICH,KIRC,UCEC	KICH
ENSG00000246273	ENSG00000046604	DSG2	CHOL,KICH,KIRC,KIRP,UVM	CHOL,KICH
ENSG00000246273	ENSG00000071189	SNX13	CHOL,COAD,GBM,KICH,KIRC,LAML,SKCM,UVM	KICH
ENSG00000246273	ENSG00000073921	PICALM	CHOL,COAD,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000108091	CCDC6	CHOL,COAD,SARC,THYM,UVM	CHOL
ENSG00000246273	ENSG00000109881	CCDC34	CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,SKCM,UVM	CHOL,KICH
ENSG00000246273	ENSG00000111371	SLC38A1	CHOL,COAD,KICH,LAML,SARC	CHOL,KICH
ENSG00000246273	ENSG00000112893	MAN2A1	CHOL,COAD,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000113163	CERT1	CHOL,COAD,KICH,SKCM,UVM	KICH
ENSG00000246273	ENSG00000113441	LNPEP	CHOL,COAD,KICH,LAML,SARC,UVM	CHOL
ENSG00000246273	ENSG00000117020	AKT3	CHOL,COAD,LAML,SARC,UVM	CHOL
ENSG00000246273	ENSG00000123739	PLA2G12A	CHOL,COAD,KICH,KIRC,SKCM,UVM	KICH
ENSG00000246273	ENSG00000125257	ABCC4	CHOL,COAD,KICH,KIRC,UVM	CHOL
ENSG00000246273	ENSG00000125827	TMX4	CHOL,GBM,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000125863	MKKS	CHOL,GBM,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000128923	MINDY2	CHOL,COAD,KICH,KIRC,SARC,UVM	CHOL,KICH
ENSG00000246273	ENSG00000130779	CLIP1	CHOL,KICH,KIRC,LAML,SARC,SKCM,UVM	KICH
ENSG00000246273	ENSG00000131470	PSMC3IP	CHOL,HNSC,SARC,THYM,UVM	CHOL
ENSG00000246273	ENSG00000133789	SWAP70	CHOL,COAD,DLBC,HNSC,UVM	CHOL
ENSG00000246273	ENSG00000133805	AMPD3	CHOL,COAD,KICH,KIRC,KIRP	CHOL,KICH
ENSG00000246273	ENSG00000134278	SPIRE1	CHOL,COAD,KICH,KIRC,KIRP,SKCM,UVM	CHOL,KICH
ENSG00000246273	ENSG00000134291	TMEM106C	CHOL,DLBC,GBM,HNSC,KICH,KIRC	CHOL,KICH
ENSG00000246273	ENSG00000136193	SCRN1	CHOL,DLBC,KICH,KIRC,STAD	CHOL,KICH
ENSG00000246273	ENSG00000139116	KIF21A	CHOL,COAD,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000139132	FGD4	CHOL,COAD,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000141385	AFG3L2	CHOL,HNSC,KICH,THYM,UVM	KICH
ENSG00000246273	ENSG00000149554	CHEK1	CHOL,COAD,HNSC,SARC,UVM	CHOL
ENSG00000246273	ENSG00000151239	TWF1	CHOL,COAD,KICH,KIRC,THYM,UVM	KICH
ENSG00000246273	ENSG00000155099	PIP4P2	CHOL,GBM,KICH,KIRC,KIRP,UVM	CHOL
ENSG00000246273	ENSG00000157259	GATAD1	CHOL,COAD,KICH,UCEC,UVM	KICH
ENSG00000246273	ENSG00000158201	ABHD3	CHOL,GBM,HNSC,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000163257	DCAF16	CHOL,COAD,HNSC,KICH,KIRC,UVM	CHOL,KICH
ENSG00000246273	ENSG00000163754	GYG1	CHOL,GBM,KICH,KIRC,KIRP,SARC,UVM	KICH
ENSG00000246273	ENSG00000163918	RFC4	CHOL,DLBC,ESCA,GBM,HNSC,SARC,UVM	CHOL
ENSG00000246273	ENSG00000163950	SLBP	CHOL,GBM,HNSC,KICH,KIRC,SARC,UVM	KICH
ENSG00000246273	ENSG00000164180	TMEM161B	CHOL,COAD,GBM,KICH,KIRC,SKCM	KICH
ENSG00000246273	ENSG00000164181	ELOVL7	CHOL,COAD,KICH,KIRC,KIRP	CHOL,KICH
ENSG00000246273	ENSG00000164284	GRPEL2	CHOL,COAD,GBM,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000164543	STK17A	CHOL,COAD,KICH,KIRC,UVM	CHOL
ENSG00000246273	ENSG00000164823	OSGIN2	CHOL,COAD,KICH,THYM,UVM	KICH
ENSG00000246273	ENSG00000164983	TMEM65	CHOL,COAD,KICH,STAD,UVM	CHOL,KICH
ENSG00000246273	ENSG00000165209	STRBP	CHOL,HNSC,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000166411	IDH3A	CHOL,KICH,KIRC,LAML,UVM	KICH
ENSG00000246273	ENSG00000166797	CIAO2A	CHOL,GBM,HNSC,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000167323	STIM1	CHOL,KICH,KIRC,KIRP,SARC	KICH
ENSG00000246273	ENSG00000168496	FEN1	CHOL,DLBC,HNSC,SARC,UVM	CHOL
ENSG00000246273	ENSG00000172115	CYCS	CHOL,GBM,KICH,KIRC,SKCM,UVM	KICH
ENSG00000246273	ENSG00000174669	SLC29A2	CHOL,HNSC,KICH,KIRC,THYM	KICH
ENSG00000246273	ENSG00000176834	VSIG10	CHOL,HNSC,SARC,UCEC,UVM	CHOL
ENSG00000246273	ENSG00000178397	FAM220A	CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000184752	NDUFA12	CHOL,GBM,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000189043	NDUFA4	CHOL,DLBC,GBM,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000197892	KIF13B	CHOL,KICH,KIRC,KIRP,LAML	CHOL,KICH
ENSG00000246273	ENSG00000198270	TMEM116	CHOL,GBM,KICH,KIRC,LAML,UCEC	KICH
ENSG00000246273	ENSG00000214290	COLCA2	CHOL,GBM,HNSC,KICH,KIRC,SARC,THYM	CHOL,KICH
ENSG00000246273	ENSG00000221886	ZBED8	CHOL,COAD,GBM,HNSC,UVM	CHOL
ENSG00000246273	ENSG00000278259	MYO19	CHOL,HNSC,KICH,KIRC,SARC,THYM,UVM	CHOL,KICH
ENSG00000246273	ENSG00000075303	SLC25A40	COAD,GBM,KICH,KIRC,SARC,UVM	KICH
ENSG00000246273	ENSG00000100614	PPM1A	COAD,KICH,KIRC,SARC,SKCM,UVM	KICH
ENSG00000246273	ENSG00000110435	PDHX	COAD,KICH,KIRC,KIRP,LAML,SKCM,THYM,UVM	KICH
ENSG00000246273	ENSG00000113966	ARL6	COAD,GBM,KICH,KIRC,KIRP	KICH
ENSG00000246273	ENSG00000114573	ATP6V1A	COAD,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000123104	ITPR2	COAD,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000135241	PNPLA8	COAD,GBM,KICH,KIRC,KIRP,SKCM,UVM	KICH
ENSG00000246273	ENSG00000138814	PPP3CA	COAD,DLBC,KICH,LAML,UVM	KICH
ENSG00000246273	ENSG00000164040	PGRMC2	COAD,KICH,KIRC,SKCM,UVM	KICH
ENSG00000246273	ENSG00000164327	RICTOR	COAD,KICH,KIRC,LAML,UVM	KICH
ENSG00000246273	ENSG00000165195	PIGA	COAD,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000165240	ATP7A	COAD,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000165355	FBXO33	COAD,KICH,KIRC,KIRP,SKCM,UVM	KICH
ENSG00000246273	ENSG00000168297	PXK	COAD,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000173542	MOB1B	COAD,KICH,KIRC,KIRP,SKCM,UVM	KICH
ENSG00000246273	ENSG00000182400	TRAPPC6B	COAD,KICH,KIRC,KIRP,SKCM,UVM	KICH
ENSG00000246273	ENSG00000188211	NCR3LG1	COAD,KICH,KIRC,KIRP,STAD	KICH
ENSG00000246273	ENSG00000198001	IRAK4	COAD,GBM,KICH,KIRC,UVM	KICH
ENSG00000246273	ENSG00000198168	SVIP	COAD,HNSC,KICH,KIRC,OV,UCEC,UVM	KICH
ENSG00000246273	ENSG00000211456	SACM1L	COAD,KICH,KIRC,KIRP,SKCM,UVM	KICH
ENSG00000246273	ENSG00000004866	ST7	DLBC,GBM,KICH,KIRC,THYM	KICH
ENSG00000246273	ENSG00000070087	PFN2	ESCA,KICH,KIRC,KIRP,UVM	KICH
ENSG00000246273	ENSG00000100612	DHRS7	KICH,KIRC,KIRP,SKCM,UVM	KICH
ENSG00000246273	ENSG00000122042	UBL3	KICH,KIRC,KIRP,LAML,UVM	KICH
ENSG00000246273	ENSG00000150995	ITPR1	KICH,KIRC,KIRP,LAML,SARC	KICH

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000246273	ENSG00000085274	MYNN	ENSG00000106603	COA1	5	CHOL,COAD,GBM,HNSC,KIRC

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000246273.5	ENST00000498905.2	157	1157	684
ENSG00000246273.5	ENST00000527406.1	88	2293	2559
ENSG00000246273.5	ENST00000499953.5	93	85	366
ENSG00000246273.5	ENST00000525636.4	93	83	364
ENSG00000246273.5	ENST00000534671.1	73	417	635
ENSG00000246273.5	ENST00000526617.1	78	205	441

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential