 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SLIRP,GLI4,PBX2,KLF12,IRF3,CIRBP,RBM7,NRF1,PHF19,RFX5,SUGP2,DMTF1,RBM28,TBP,GABPA,DDX55,ZBTB5,RNPC3,ZFP69,SAFB2,THOC1,LSM3,TRNT1,CHTOP,LSM5,ZBED5,CENPT,TTC14,RBM4,RC3H1,SP100,SUGP1,ZNF44,RBMX,AGO2,RBM4B,CSTF3,PUS3,RBM26,RNPS1,RBM14,PURB,ZBTB3,CWC15,ASH1L,DHX34,CASC3,PPIE,CPSF7,MBD2,SF3B6,NELFE,LIN54,THAP9,DDX6,USF1,E2F5,CSTF1,E2F6,ZNF22,PHF1,FOXJ3,THYN1,ZC3H8,TGIF2,HSF4,NOL9,THOC6,DZIP3,ILF2,ZFP62,ZNF48,CELF1,PSPC1,RTCA,ELK4,TIGD1,RBM45,MBD4,AGO3,THAP3,UNC50,SRSF2,MYNN,ZNF83,NXF1,ZFX,EIF2D,PUS10,GPBP1,C1D,RBM6,HMGN3,CPSF3,KHDC1,E2F1,NOL3,PUM2,XPO1,RBM5,ELF2,LSM2,NFYB,ZNF84,PIN1,RXRB,TRA2A,RBM8A,SMYD3,ZNF69,HINFP,XPA,NR2C1,THOC7,TFDP2,PCGF6,SFPQ,RBM33,SRSF7 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | RBM5,CNOT6,GMEB1,MYNN,CELF1,LSM2,TBP,DDX10,RBM6,CIRBP,EIF2D,SRP14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000246067 | ENST00000534499 | exon_skip_303345 | chr19:17227839-17228005 | -16.98 | -0.1196 | OCEL1 | ENST00000215061 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_370518 | chr22:50247691-50247776 | -9.15 | -0.1726 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000246067 | ENST00000534499 | exon_skip_5818 | chr1:45568484-45568684 | -17.20 | -0.1211 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_11029 | chr1:154989559-154989707 | -19.92 | -0.1633 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_11532 | chr1:155137560-155137722 | -19.26 | -0.1211 | SLC50A1 | ENST00000368404 | In-frame | | ENSG00000246067 | ENST00000530270 | exon_skip_123726 | chr15:75339701-75339878 | -14.76 | -0.1210 | COMMD4 | ENST00000267935 | In-frame | | ENSG00000246067 | ENST00000530270 | exon_skip_140232 | chr16:634888-634956 | -9.10 | -0.2333 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_140339 | chr16:635611-635774 | -22.39 | -0.1503 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_145647 | chr16:69121052-69121170 | -11.97 | -0.1088 | CHTF8 | ENST00000398235,ENST00000448552 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_382458 | chr3:38131595-38131638 | -6.03 | -0.3174 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_436498 | chr5:96729152-96729209 | -8.60 | -0.2687 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000246067 | ENST00000530270 | exon_skip_446770 | chr5:178215275-178215430 | -15.76 | -0.1185 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_462160 | chr6:127316449-127316502 | -7.57 | -0.1802 | ECHDC1 | ENST00000531967 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_114365 | chr14:74290026-74290118 | -10.20 | -0.1186 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_353131 | chr20:58669290-58669453 | -19.46 | -0.1306 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000246067 | ENST00000530270 | exon_skip_360685 | chr21:44973196-44973265 | -10.21 | -0.1926 | FAM207A | ENST00000291634 | In-frame | | ENSG00000246067 | ENST00000533528 | exon_skip_370501 | chr22:50220250-50221874 | -30.30 | -0.1086 | TUBGCP6 | ENST00000248846 | Frame-shift | | ENSG00000246067 | ENST00000526795 | exon_skip_123601 | chr15:74897010-74897219 | -16.40 | -0.1242 | MPI | ENST00000352410 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000246067 | hsa-mir-22 | ENST00000527627 | chr11:83072406-83072491 | 181.00 | -77.66 | 85 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000526795 | chr11:83072085-83072176 | 183.00 | -89.90 | 86 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000526795 | chr11:83072536-83072620 | 154.00 | -74.12 | 72 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000533528 | chr11:83072132-83072205 | 157.00 | -84.09 | 82 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000533528 | chr11:83072228-83072314 | 152.00 | -67.39 | 87 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000533528 | chr11:83072321-83072403 | 147.00 | -66.16 | 76 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000533708 | chr11:83072284-83072381 | 177.00 | -72.92 | 93 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000533708 | chr11:83072532-83072624 | 173.00 | -89.53 | 85 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000533708 | chr11:83072119-83072176 | 167.00 | -68.56 | 52 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000533708 | chr11:83072708-83072799 | 157.00 | -67.31 | 87 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000534499 | chr11:83072249-83072346 | 177.00 | -72.92 | 93 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000534499 | chr11:83072497-83072589 | 173.00 | -89.53 | 85 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000528156 | chr11:83072347-83072437 | 152.00 | -69.67 | 81 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000528156 | chr11:83072421-83072513 | 141.00 | -83.11 | 80 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000528156 | chr11:83072598-83072702 | 140.00 | -76.51 | 103 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000530270 | chr11:83073274-83073359 | 170.00 | -61.12 | 84 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000530270 | chr11:83073143-83073221 | 160.00 | -66.15 | 70 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000530270 | chr11:83072356-83072437 | 152.00 | -68.18 | 81 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000530270 | chr11:83072421-83072513 | 141.00 | -83.11 | 80 | NA | | ENSG00000246067 | hsa-mir-22 | ENST00000530270 | chr11:83072598-83072702 | 140.00 | -76.51 | 103 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000246067 | ENSG00000065029 | ZNF76 | ENSG00000003756 | RBM5 | 5 | CHOL,KICH,KIRC,LGG,THCA | | ENSG00000246067 | ENSG00000167766 | ZNF83 | ENSG00000003756 | RBM5 | 5 | CHOL,COAD,KICH,KIRC,LUAD | | ENSG00000246067 | ENSG00000065029 | ZNF76 | ENSG00000112592 | TBP | 6 | CHOL,KICH,KIRC,KIRP,LIHC,THCA | | ENSG00000246067 | ENSG00000167766 | ZNF83 | ENSG00000112592 | TBP | 5 | CHOL,KICH,KIRC,KIRP,LIHC | | ENSG00000246067 | ENSG00000065029 | ZNF76 | ENSG00000004534 | RBM6 | 9 | CHOL,KICH,KIRC,KIRP,LGG,LIHC,PRAD,THCA,THYM | | ENSG00000246067 | ENSG00000167766 | ZNF83 | ENSG00000004534 | RBM6 | 8 | CHOL,COAD,KICH,KIRC,KIRP,LIHC,LUAD,PRAD | | ENSG00000246067 | ENSG00000065029 | ZNF76 | ENSG00000099622 | CIRBP | 5 | CHOL,KIRP,LGG,PRAD,THCA | | ENSG00000246067 | ENSG00000167967 | E4F1 | ENSG00000099622 | CIRBP | 5 | CHOL,HNSC,KIRP,LGG,PRAD | | ENSG00000246067 | ENSG00000065029 | ZNF76 | ENSG00000143486 | EIF2D | 6 | KICH,KIRP,LGG,LIHC,PAAD,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000246067 | RAB30-DT,hsa-mir-22,C1orf35 | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,PTMA | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,FBXO46 | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,RBM14 | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,FAF1 | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,BUD13 | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,SRRT | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,SKA2 | KICH,CHOL,ACC,SARC,THYM | | ENSG00000246067 | RAB30-DT,hsa-mir-22,CCHCR1 | KICH,CHOL,ACC,SARC,THYM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000246067.6 | ENST00000501011.5 | 71 | 169 | 384 | | ENSG00000246067.6 | ENST00000527627.4 | 70 | 246 | 34 | | ENSG00000246067.6 | ENST00000526795.1 | 53 | 160 | 2 | | ENSG00000246067.6 | ENST00000533528.1 | 53 | 179 | 18 | | ENSG00000246067.6 | ENST00000533708.1 | 25 | 196 | 273 | | ENSG00000246067.6 | ENST00000534499.1 | 69 | 518 | 309 | | ENSG00000246067.6 | ENST00000528156.1 | 69 | 479 | 270 | | ENSG00000246067.6 | ENST00000530270.2 | 87 | 111 | 374 |
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