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lncRNA: ENSG00000245937

Summary for LINC01184

Gene summary

Gene information	Ensembl ID	ENSG00000245937
	Gene symbol	LINC01184
	Gene name	long intergenic non-protein coding RNA 1184
	HGNC	49565
	Entrez ID	644873
	Gene type	lincRNA
	Synonyms	LINC01184\|05q23.3
	UniProtAcc

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Structure and expression level for LINC01184

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000245937	4.655706e-01	1.269455e-03	CHOL	2.073033e-03

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lncRNA-Protein interaction for LINC01184

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000189079	ARID2	40.5	90.1338	Q68CP9	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000083544	TDRD3	25.5	97.0181	Q9H7E2	RBP,Epi	ChIP-seq
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000112511	PHF1	5.47	95.3162	O43189	TF,Epi	NA
ENSG00000245937	ENST00000606855	LINC01184	ENSG00000198919	DZIP3	57.42	91.8884	Q86Y13	RBP,Epi	Predict
ENSG00000245937	ENST00000606855	LINC01184	ENSG00000189079	ARID2	46.21	91.5186	Q68CP9	TF,Epi	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000083544	TDRD3	19.16	93.4484	Q9H7E2	RBP,Epi	ChIP-seq
ENSG00000245937	ENST00000508878	LINC01184	ENSG00000123636	BAZ2B	114.27	91.0182	Q9UIF8	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000123636	BAZ2B	88.82	97.7643	Q9UIF8	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000189079	ARID2	46.68	94.0454	Q68CP9	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000134046	MBD2	34.38	94.9041	Q9UBB5	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245937	ENST00000606855	LINC01184	ENSG00000189079	ARID2	46.21	91.1235	Q68CP9	TF,Epi	NA
ENSG00000245937	ENST00000606855	LINC01184	ENSG00000196670	ZFP62	40.64	91.6897	Q8NB50	TF	NA
ENSG00000245937	ENST00000606855	LINC01184	ENSG00000184939	ZFP90	11.12	90.0234	Q8TF47	TF	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000099326	MZF1	62.97	90.7407	P28698	TF	ChIP-seq
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000189079	ARID2	40.5	90.0194	Q68CP9	TF,Epi	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000167232	ZNF91	40.33	95.9813	Q05481	TF	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000198040	ZNF84	29.8	93.9945	P51523	TF	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000062194	GPBP1	17.93	92.7797	Q86WP2	TF	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000184939	ZFP90	12.98	91.4735	Q8TF47	TF	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000154957	ZNF18	7.26	91.1085	P17022	TF	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000162599	NFIA	4.41	92.4216	Q12857	TF	NA
ENSG00000245937	ENST00000508878	LINC01184	ENSG00000123636	BAZ2B	114.27	91.358	Q9UIF8	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000123636	BAZ2B	88.82	97.9112	Q9UIF8	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000099326	MZF1	64.93	95.6276	P28698	TF	ChIP-seq
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000167232	ZNF91	62.82	95.4033	Q05481	TF	NA
ENSG00000245937	ENST00000508878	LINC01184	ENSG00000167232	ZNF91	61.53	92.5685	Q05481	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000169981	ZNF35	53.14	95.0177	P13682	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000167232	ZNF91	48.35	97.9172	Q05481	TF	NA
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000198040	ZNF84	46.76	93.7844	P51523	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000189079	ARID2	46.68	94.212	Q68CP9	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000196670	ZFP62	42.75	96.2304	Q8NB50	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000198040	ZNF84	37.25	96.9573	P51523	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000169740	ZNF32	35.12	95.0675	P17041	TF	NA
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000166432	ZMAT1	35.01	93.9379	Q5H9K5	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000134046	MBD2	34.38	95.4302	Q9UBB5	TF,Epi	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000184939	ZFP90	30.38	96.6961	Q8TF47	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000132846	ZBED3	26.43	93.9381	Q96IU2	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000166432	ZMAT1	26.36	94.4828	Q5H9K5	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000062194	GPBP1	24.31	96.6641	Q86WP2	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000154957	ZNF18	22.14	95.4429	P17022	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000136936	XPA	18.71	93.7161	P23025	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000186130	ZBTB6	13.22	92.5061	Q15916	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000185129	PURA	12.61	90.2821	Q00577	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000162599	NFIA	10.51	92.4906	Q12857	TF	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000144161	ZC3H8	9.18	96.28	Q8N5P1	TF,RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000112511	PHF1	5.47	95.5997	O43189	TF,Epi	NA
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000162599	NFIA	4.89	91.7516	Q12857	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000129317	PUS7L	63.96	92.2994	Q9H0K6	RBP	NA
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000055917	PUM2	62.72	92.1305	Q8TB72	RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000091009	RBM27	54.93	92.049	Q9P2N5	RBP	NA
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000079134	THOC1	54.3	90.7087	Q96FV9	RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000099622	CIRBP	44.8	94.605	Q14011	RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000134597	RBMX2	41.11	95.6643	Q9Y388	RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000113742	CPEB4	36.47	94.3267	Q17RY0	RBP	NA
ENSG00000245937	ENST00000508878	LINC01184	ENSG00000083544	TDRD3	30.68	90.7456	Q9H7E2	RBP,Epi	ChIP-seq
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000083544	TDRD3	25.5	97.2832	Q9H7E2	RBP,Epi	ChIP-seq
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000150316	CWC15	20.83	95.0629	Q9P013	RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000080802	CNOT4	15.52	94.402	O95628	RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000139168	ZCRB1	12.99	95.2005	Q8TBF4	RBP	Predict
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000072756	TRNT1	12.08	94.209	Q96Q11	RBP	NA
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000113300	CNOT6	9.69	91.566	Q9ULM6	RBP	NA
ENSG00000245937	ENST00000499346	LINC01184	ENSG00000072756	TRNT1	9.48	93.3442	Q96Q11	RBP	NA
ENSG00000245937	ENST00000501702	LINC01184	ENSG00000144161	ZC3H8	9.18	95.883	Q8N5P1	TF,RBP	NA
ENSG00000245937	ENST00000508353	LINC01184	ENSG00000091009	RBM27	73.94	91.0595	Q9P2N5	RBP	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000129317	PUS7L	43.17	93.202	Q9H0K6	RBP	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000079134	THOC1	36.36	90.2978	Q96FV9	RBP	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000164548	TRA2A	22.86	93.8169	Q13595	RBP	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000083544	TDRD3	19.16	93.8031	Q9H7E2	RBP,Epi	ChIP-seq
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000184898	RBM43	15.32	91.1406	Q6ZSC3	RBP	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000080802	CNOT4	11.03	91.0548	O95628	RBP	NA
ENSG00000245937	ENST00000501652	LINC01184	ENSG00000072756	TRNT1	6.96	91.1249	Q96Q11	RBP	NA
ENSG00000245937	ENST00000606855	LINC01184	ENSG00000198919	DZIP3	57.42	91.4975	Q86Y13	RBP,Epi	Predict
ENSG00000245937	ENST00000606855	LINC01184	ENSG00000176102	CSTF3	43.02	90.1975	Q12996	RBP	NA

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lncRNA-DNA interaction for LINC01184

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

CNOT4,PUS10,GPBP1,PHF1,PURA,HMGN3,THYN1,ZC3H8,TTC14,NOL3,HSF4,ZBED3,RBM41,PUM2,DZIP3,CIRBP,ZFP62,MZF1,ZNF91,ARID2,ZNF84,BAZ2B,CSTF3,TIGD6,ELK4,TIGD1,RBM45,CXXC5,RBM27,TRA2A,PURB,MYEF2,SMYD3,CWC15,PUS7L,UNC50,NFIA,XPA,PPIE,RBM43,MBD2,ZMAT1,ZBTB6,NSUN6,THAP6,THOC1,ZNF18,EIF2D,TRNT1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

RBM43,NFIA,DDX46,ZMAT1,ARID2,MZF1,PUS10,ZBTB6,RBMX2,CIRBP,EIF2D,SRP14

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC01184

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CIC

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for LINC01184

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_152427	ENSG00000245937.6	chr5	127956916	-	lincRNA	LINC01184	ENST00000514409.4	lincRNA	LINC01184-002
LncEditing_152777	ENSG00000245937.6	chr5	128055090	-	lincRNA	LINC01184	ENST00000514573.4	lincRNA	LINC01184-007
LncEditing_153217	ENSG00000245937.6	chr5	128082171	-	lincRNA	LINC01184	ENST00000606251.1	lincRNA	LINC01184-010

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000245937	LncEditing_152427	KIRC	chr5_127956916_-	3.074134e+00	2.889655e+00	1.120038e+01	3.599027e+00	3.194106e-04	3.563395e-04	UP
ENSG00000245937	LncEditing_152427	OV	chr5_127956916_-	3.459581e+00	2.854878e+00	3.607918e+00	3.642918e+00	2.695642e-04	3.017216e-04	UP
ENSG00000245937	LncEditing_153217	OV	chr5_128082171_-	3.791574e+00	2.910719e+00	2.621772e+00	4.101076e+00	4.112329e-05	4.850913e-05	UP
ENSG00000245937	LncEditing_152427	STAD	chr5_127956916_-	3.845835e+00	3.160503e+00	3.531787e+00	3.088593e+00	2.011069e-03	2.136387e-03	UP
ENSG00000245937	LncEditing_152777	STAD	chr5_128055090_-	4.031766e+00	3.130454e+00	2.739426e+00	4.239028e+00	2.244893e-05	2.634989e-05	UP
ENSG00000245937	LncEditing_152427	BRCA	chr5_127956916_-	4.591674e+00	4.033056e+00	5.343400e+00	4.457586e+00	8.288774e-06	8.967171e-06	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000245937.6	ENST00000499346.5	79	78	317
ENSG00000245937.6	ENST00000514409.4	84	78	332
ENSG00000245937.6	ENST00000501652.4	67	201	1
ENSG00000245937.6	ENST00000501173.5	132	739	1137
ENSG00000245937.6	ENST00000514573.4	126	914	534
ENSG00000245937.6	ENST00000508353.4	82	566	318
ENSG00000245937.6	ENST00000606855.1	58	174	350
ENSG00000245937.6	ENST00000512185.1	77	238	5
ENSG00000245937.6	ENST00000501702.5	47	122	265
ENSG00000245937.6	ENST00000508878.4	82	1185	937
ENSG00000245937.6	ENST00000606251.1	120	358	720

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential