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lncRNA: ENSG00000245573

Summary for BDNF-AS

Gene summary

Gene information	Ensembl ID	ENSG00000245573
	Gene symbol	BDNF-AS
	Gene name	BDNF antisense RNA
	HGNC	20608
	Entrez ID	497258
	Gene type	antisense
	Synonyms	11p14.1\|BDNF-AS
	UniProtAcc

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Structure and expression level for BDNF-AS

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000245573	-3.828509e-01	2.131683e-04	KICH	3.388829e-04

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lncRNA-Protein interaction for BDNF-AS

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000123636	BAZ2B	113.36	95.8216	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000116539	ASH1L	76.38	93.807	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000123636	BAZ2B	120.13	94.8081	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000123636	BAZ2B	91.23	94.6201	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000123636	BAZ2B	84.72	96.3157	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000116539	ASH1L	76.81	95.0133	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000156256	USP16	60.63	93.0503	Q9Y5T5	Epi	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000116539	ASH1L	60.34	94.4905	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000116539	ASH1L	58.65	93.6406	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000015171	ZMYND11	6.18	90.6381	Q15326	Epi	ChIP-seq

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245573	ENST00000501663	BDNF-AS	ENSG00000236287	ZBED5	59.54	91.1409	Q49AG3	TF	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000123636	BAZ2B	113.36	94.6818	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000123636	BAZ2B	82.52	96.8021	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000116539	ASH1L	76.38	93.9169	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000196867	ZFP28	73.04	92.4991	Q8NHY6	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000116539	ASH1L	55.59	96.1829	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000196867	ZFP28	53.24	94.6595	Q8NHY6	TF	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000166432	ZMAT1	34.81	90.0482	Q5H9K5	TF	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000105708	ZNF14	25.3	90.7704	P17017	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000062194	GPBP1	23.45	95.034	Q86WP2	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000105708	ZNF14	22.34	92.9149	P17017	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000142065	ZFP14	19.63	94.5163	Q9HCL3	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000065029	ZNF76	15.41	95.1257	P36508	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000132846	ZBED3	15.08	91.7704	Q96IU2	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000109381	ELF2	12.24	92.5246	Q15723	TF	ChIP-seq
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000095574	IKZF5	8.18	90.4728	Q9H5V7	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000186130	ZBTB6	6.43	91.4126	Q15916	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000175395	ZNF25	5.38	95.2619	P17030	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000275111	ZNF2	3.6	94.5035	Q9BSG1	TF	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000198939	ZFP2	1.27	93.3388	Q6ZN57	TF	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000123636	BAZ2B	120.13	95.216	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000123636	BAZ2B	91.23	94.9296	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000196867	ZFP28	88.23	91.0109	Q8NHY6	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000123636	BAZ2B	84.72	95.9496	Q9UIF8	TF,Epi	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000116539	ASH1L	76.81	94.8705	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000196867	ZFP28	61.98	92.2435	Q8NHY6	TF	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000116539	ASH1L	60.34	94.4584	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000116539	ASH1L	58.65	93.3991	Q9NR48	TF,Epi	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000236287	ZBED5	53.26	91.3291	Q49AG3	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000105708	ZNF14	26.63	93.4742	P17017	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000142065	ZFP14	25.82	91.6649	Q9HCL3	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000062194	GPBP1	25.7	93.7172	Q86WP2	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000065029	ZNF76	17.01	92.9186	P36508	TF	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000105708	ZNF14	16.89	90.3278	P17017	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000109381	ELF2	14.61	92.3552	Q15723	TF	ChIP-seq
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000095574	IKZF5	9.38	90.7609	Q9H5V7	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000175395	ZNF25	6.18	91.4131	P17030	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000275111	ZNF2	6.12	91.2361	Q9BSG1	TF	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000275111	ZNF2	3.09	90.6656	Q9BSG1	TF	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000198939	ZFP2	1.74	92.3922	Q6ZN57	TF	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000065029	ZNF76	1.47	91.6802	P36508	TF	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000198939	ZFP2	1.21	90.334	Q6ZN57	TF	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000186130	ZBTB6	0.99	90.3867	Q15916	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000056097	ZFR	123.59	92.5056	Q96KR1	RBP	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000056097	ZFR	90.88	92.3495	Q96KR1	RBP	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000056097	ZFR	86.63	95.4833	Q96KR1	RBP	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000213079	SCAF8	85.14	92.9243	Q9UPN6	RBP	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000159082	SYNJ1	67.66	95.1685	O43426	RBP	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000213079	SCAF8	65.03	95.5243	Q9UPN6	RBP	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000125676	THOC2	62.75	92.7458	Q8NI27	RBP	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000213079	SCAF8	60.54	93.4344	Q9UPN6	RBP	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000135870	RC3H1	54.94	91.7611	Q5TC82	RBP	NA
ENSG00000245573	ENST00000501176	BDNF-AS	ENSG00000107864	CPEB3	45.47	90.8563	Q8NE35	RBP	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000135870	RC3H1	41.93	94.0029	Q5TC82	RBP	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000107864	CPEB3	40.99	91.6373	Q8NE35	RBP	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000135870	RC3H1	40.43	91.831	Q5TC82	RBP	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000173914	RBM4B	24.41	90.9783	Q9BQ04	RBP	NA
ENSG00000245573	ENST00000499008	BDNF-AS	ENSG00000107164	FUBP3	9.28	92.9885	Q96I24	RBP	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000107164	FUBP3	3.03	91.4887	Q96I24	RBP	NA
ENSG00000245573	ENST00000530313	BDNF-AS	ENSG00000174720	LARP7	0.06	93.9055	Q4G0J3	RBP	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000056097	ZFR	110.43	91.5082	Q96KR1	RBP	NA
ENSG00000245573	ENST00000500662	BDNF-AS	ENSG00000056097	ZFR	108.16	90.2515	Q96KR1	RBP	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000056097	ZFR	80.04	96.168	Q96KR1	RBP	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000163728	TTC14	79.57	92.0151	Q96N46	RBP	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000125676	THOC2	68.75	91.5395	Q8NI27	RBP	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000159082	SYNJ1	64.23	93.6361	O43426	RBP	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000135870	RC3H1	52.31	91.3931	Q5TC82	RBP	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000107864	CPEB3	41.37	92.9974	Q8NE35	RBP	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000135870	RC3H1	38.35	95.0172	Q5TC82	RBP	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000173914	RBM4B	25.27	91.1779	Q9BQ04	RBP	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000174720	LARP7	12.68	94.958	Q4G0J3	RBP	NA
ENSG00000245573	ENST00000499568	BDNF-AS	ENSG00000107164	FUBP3	4.21	93.0533	Q96I24	RBP	NA
ENSG00000245573	ENST00000530686	BDNF-AS	ENSG00000107164	FUBP3	2.95	90.6291	Q96I24	RBP	NA

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lncRNA-DNA interaction for BDNF-AS

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

KRCC1,C11orf1,RAB28,RNF141,PEX2,RCBTB1,MFSD8,TAF9B,ANGEL2,ATPSCKMT,FASTKD3,LIFR,TMEM267,DYNC2LI1,MCEE,FAM120B,SIRT3,ZNF2,KAT7,C12orf29,RNF170,ARV1,SPIN3,OSCP1,IFT88,FAM120AOS,GABPA,IKZF5,TCAIM,KLHDC1,TTC30B,DCAKD,TTC19,ZFP14,RHOT1,RNPC3,WDR5B,GORASP1,INCA1,ZMYND12,ZNF25,LARP7,ARAP2,ABITRAM,KBTBD3,SLC18B1,ZBED5,TMEM220,CLN5,ODR4,CTSO,OSGEPL1,TTC14,ZBED3,STK33,GKAP1,RC3H1,IQCA1,ORC3,DPY19L4,FAM104B,DENND11,RBM4B,ELP4,ANAPC13,TCTA,ASH1L,SLC39A9,UTP14C,BBS10,PRIMPOL,RBM43,ANAPC10,ALDH7A1,TTC30A,THAP9,THOC2,GLT8D1,ZBTB6,FBXO8,HDHD2,ANKRD46,FBXO3,THAP6,SEC62,C4orf33,TMEM9B,SAP30L,SLC35A5,SBDS,BBS12,LIAS,TMEM128,REEP5,KLF15,GNPDA2,DZIP3,NBR1,PNPLA8,SEC63,APPL2,ANKRA2,KCTD18,C2orf49,VPS52,FAXDC2,COQ7,CCDC121,CETN3,PEX11A,YAE1,FAM149B1,RBM18,UNC50,CRYZL1,TMEM87A,DCUN1D1,DNAJC18,SALL2,FAM229B,ZMAT1,ZFR,ADHFE1,CBR4,MOCS2,SYNJ1,CRCP,GPBP1,DIABLO,MFF,PLSCR4,ZNF14,SCRN3,GIN1,LIPT1,CPEB3,ELF2,NDUFA5,LYRM7,SMAD4,NUDCD2,UEVLD,ZFP28,DMAC2L,COA5,CRBN,ALDH9A1,ERCC8,STXBP3,GSTA4,MICU2,BBS4,BAZ2B,TMEM50B,SNX13,PIK3C2A,USP16,FBXO36,DNAJC24,PCBD2,MRPS14,NDRG2,ETFRF1,LRRC6,RCBTB2,RCHY1,TBC1D5,LIN7C,WBP1,NUCKS1,TRMT10A,MRFAP1L1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for BDNF-AS

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TRPV2,NCLN

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for BDNF-AS

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000245573.6	ENST00000530686.4	83	17	268
ENSG00000245573.6	ENST00000532965.4	69	488	279
ENSG00000245573.6	ENST00000501176.5	63	62	253
ENSG00000245573.6	ENST00000499008.6	145	799	362
ENSG00000245573.6	ENST00000502161.5	111	2099	1764
ENSG00000245573.6	ENST00000500662.5	119	652	293
ENSG00000245573.6	ENST00000499568.2	145	730	293
ENSG00000245573.6	ENST00000530313.1	83	1061	810
ENSG00000245573.6	ENST00000501663.2	73	154	375

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential