 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,RBM39,ZBTB4,CIRBP,MZF1,MYSM1,ZNF2,ZXDC,SUGP2,DMTF1,RBM27,ZNF77,TBP,GABPA,IKZF5,DDX55,ZBTB5,HESX1,ZFP14,RNPC3,ATMIN,THOC1,ZNF25,LARP7,CNOT4,CHTOP,CWC22,TFAP4,DDX59,ZBED5,CENPT,TTC14,CREB1,RC3H1,MRM1,HIF1A,ZNF44,RBMX,RBM4B,U2AF2,CSTF3,TIGD6,RBM26,RNPS1,GZF1,ADNP,MYEF2,TERF2,SURF6,ASH1L,CASC3,FUBP1,ZFP30,SP4,RBM43,THAP9,THOC2,ZBTB6,ZNF34,THAP6,DDX17,E2F5,SRRM2,RFX7,ZNF57,MECP2,PHF1,FOXJ3,PURA,PHAX,ZNF41,ZC3H8,TTF1,HSF4,DZIP3,SRBD1,ZFP62,PARN,PAIP1,SCMH1,TIGD1,ELK4,RBM45,NFXL1,RBM18,HOMEZ,UNC50,DDX31,ZMAT1,ZNF83,ZFR,ZNF3,ZFX,ZNF18,NR2C2,EIF2D,SYNJ1,SIX5,GPBP1,ZNF14,LSM11,PUM2,XPO1,RBM5,ELF2,SMAD4,NFYB,ZNF43,ZNF17,ZNF84,DDX42,ZHX2,TRA2A,KMT2A,XPA,NR2C1,ZFP3,ADAT1,RBM33,NOL8,ATF2,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | SP4,ZFP14,MZF1,ZNF18,U2AF2,ZMAT1,RBM33,RBM45,ZFR,THOC2,FOXJ3,ZNF3,RC3H1,ZNF83,EIF2D,CIRBP,DDX59 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000245317 | ENST00000499601 | exon_skip_7523 | chr1:78660553-78660654 | -13.01 | -0.2323 | IFI44 | ENST00000370747 | Frame-shift | | ENSG00000245317 | ENST00000499601 | exon_skip_111863 | chr14:23565815-23565892 | -14.99 | -0.2053 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000245317 | ENST00000499601 | exon_skip_300663 | chr19:1425877-1425960 | -12.41 | -0.2758 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000245317 | ENST00000499601 | exon_skip_41841 | chr10:68756272-68756483 | -18.90 | -0.1853 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000245317 | ENST00000499601 | exon_skip_74009 | chr11:64773429-64773505 | -15.88 | -0.2406 | SF1 | ENST00000377390 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000245317 | hsa-mir-22 | ENST00000499601 | chr5:179859798-179859881 | 180.00 | -71.59 | 78 | NA | | ENSG00000245317 | hsa-mir-22 | ENST00000499601 | chr5:179859328-179859418 | 163.00 | -71.10 | 84 | NA | | ENSG00000245317 | hsa-mir-22 | ENST00000499601 | chr5:179859510-179859591 | 161.00 | -80.03 | 84 | NA | | ENSG00000245317 | hsa-mir-22 | ENST00000499601 | chr5:179859190-179859280 | 154.00 | -85.88 | 84 | NA | | ENSG00000245317 | hsa-mir-22 | ENST00000499601 | chr5:179859061-179859140 | 149.00 | -84.25 | 86 | NA | | ENSG00000245317 | hsa-mir-22 | ENST00000499601 | chr5:179860077-179860162 | 141.00 | -66.05 | 82 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000245317.2 | ENST00000499601.2 | 93 | 279 | 1 |
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