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lncRNA: ENSG00000244701

Summary for RP5-894A10.2

Gene summary

Gene information	Ensembl ID	ENSG00000244701
	Gene symbol	RP5-894A10.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP5-894A10.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000244701	1.753670e+02	1.407210e+00	1.106793e-01	1.271430e+01	4.920000e-37	7.000000e-36	UP	KIRC
ENSG00000244701	8.197161e+01	1.063716e+00	1.164440e-01	9.134998e+00	6.540000e-20	1.640000e-18	UP	PRAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000244701	3.195485e-01	3.237672e-02	CHOL	3.374080e-02
ENSG00000244701	-4.616530e-01	5.273207e-06	KICH	1.214344e-05
ENSG00000244701	3.497392e-01	2.684466e-17	PRAD	3.514860e-16

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lncRNA-Protein interaction for RP5-894A10.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

Top

lncRNA-DNA interaction for RP5-894A10.2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF1,TSPYL2,KRCC1,GSDMB,B3GNTL1,ARL16,VAMP1,EPOR,TNFRSF4,MFSD8,ABHD17A,ANTKMT,TMEM234,CIRBP,PET100,RNF166,MZF1,MCEE,DYNC2I2,SIRT3,CNOT9,MAPK8IP3,LYSMD4,TMUB1,PPP2R3B,N4BP2L2,BCS1L,DMTF1,MKNK1,L3HYPDH,CTU1,ACD,UNKL,DPP7,PHF10,PIGG,XKR8,LMBR1L,GPCPD1,TRAPPC12,PNKD,ACSS1,ULK3,KMT2B,STAT2,VMP1,ZFP14,CENATAC,NPEPL1,WDR5B,SNRPA,TMC8,SAFB2,KCTD13,MSANTD2,TUBGCP6,CCDC14,FAM200A,CHKA,FAAP20,CLK4,C6orf136,GIMAP7,COMMD7,DENND1C,ZBED5,EIF2B5,PRKD2,PPIH,TTC14,CREB1,CDK2AP2,SLC2A11,SVBP,GATD1,GKAP1,SPRN,SUGP1,SPG7,TAZ,NAA80,SIGIRR,FAM104B,C19orf44,SRSF4,SIAH1,SCYL3,DNAJC2,CLCN6,ECHDC2,OGT,RCCD1,NOD1,SCML1,RAB4B,COX19,CLK2,EXOC3L1,ILKAP,ARID4B,POLG2,DHX34,NFIA,TUT4,RING1,RBM15,SSU72,CHKB,METTL17,JAK3,TMEM39B,BBIP1,TRIM11,CBY1,SLC12A9,WDR83,OSGEP,USF1,CTC1,CLK1,MRRF,ITGB3BP,GABPB1,NASP,RABL2A,RPS6KB2,ANKRD39,DHPS,RPAIN,MOV10,OFD1,CARS2,ACYP1,SLC25A29,FCHSD1,PIH1D1,IFT172,CC2D1B,CFAP298,MIS12,B3GALT6,CAMKMT,PFDN6,HSH2D,INO80E,NAPB,C3orf62,CYSRT1,APBA3,CBX7,SETD5,ALKBH2,ORMDL1,BRAF,MIIP,DHODH,LPAR2,HDHD3,DDX51,AGER,MBD4,FUZ,ESS2,ORC2,NFKBIZ,SPOUT1,SRSF2,C1orf52,CUL9,CDK11A,POGLUT1,TECPR1,MRPL32,PASK,TSEN54,LRRC37B,TOE1,ATG4B,SUPT20H,LMNTD2,CCDC191,NXF1,DCUN1D2,PAN2,BMF,FAM229A,PFDN5,CCS,GIGYF1,HMGN3,NOP2,FAM193B,NDUFB1,PNKP,ABCA7,TMCO6,NOL3,SLC25A28,STK25,SEC31B,CZIB,ZFC3H1,KLHL17,ARHGAP33,MBTD1,N4BP2L1,DNASE1,SEPSECS,HEXD,ARHGEF7,HDAC8,GAS8,VCPKMT,SCNN1D,EIF4A1,CCDC24,DHX16,CCDC12,VPS13A,POLM,DECR2,ZNF69,SHROOM1,KIF12,ERCC5,IQCC,CASTOR3,ZNF30,TMEM168,FAAP100,SLC26A11,FANCL,NCF4,GLI4,OVGP1,DNAJC4,MRPL55,LENG8,RBBP8NL,NMRAL1,SH2B1,PHKA2,STK11,PPP1R12C,C1orf159,DDX56,DGKA,PRR3,FAM98C,UBE2G2,PPOX,IP6K2,ARIH2,WDR53,PPWD1,RSBN1,MLLT6,ATG12,PIBF1,AHI1,INO80D,AGK,EIF2B4,C20orf96,DDX55,RASAL3,ARFGAP1,MIX23,CASP2,CAPN10,KRIT1,AP1G2,PFDN2,GLMN,FAM111A,METTL21A,FAM136A,THOC1,ANKMY1,WDR59,C8orf58,NUBP2,TMEM175,RIPK3,PHF12,GPN2,ACBD6,TNK2,INTS11,ARHGAP27,EZH2,REXO1,IFT140,TAMM41,POPDC2,NBEAL2,PARP12,RASGRP2,GDPD3,ZNF44,TMEM138,DENND11,NPDC1,PKD1,LTO1,TRAF1,PIDD1,METAP1D,AP5Z1,BCLAF3,SEMA4D,CCDC106,NFYC,CCDC137,ALS2CL,IFT80,CEP83,NAA10,FBXO44,UBN2,ANKDD1A,EXD3,METTL23,PPP2R5B,NFKBID,GSDMD,LRIG2,P4HTM,PATZ1,ABHD18,PCED1A,ABTB1,NRBP2,TUSC2,EHMT2,IKBKB,NBPF11,MRPS15,DYNLT2,BRF1,ACIN1,ZC3H8,GNL2,ENOSF1,THOC6,POLRMT,DZIP3,ANKRD49,PAXBP1,LEMD2,CCDC125,COA1,MOGS,GALT,TADA2A,FNBP4,DENND6B,ATF4,CCHCR1,ZFYVE19,LRRC56,PRMT7,INPP5E,TRADD,PHF11,RSRP1,SLC35C2,IL11RA,SGF29,NEK8,CHD2,MBD3,USP40,IRX5,PTPN6,CRACR2B,CLEC2D,ATG14,GOLGB1,ZSWIM1,FIZ1,TRPT1,TATDN2,LTB4R,KIFC2,TSNARE1,NIT1,ODF3B,HEMK1,LINS1,UPF3B,ROGDI,RABEP2,IFT20,PTOV1,PCSK4,ALKBH4,GSAP,DDX11,FRS3,C2orf68,FBXL8,GNRH1,ZSWIM8,AP4M1,NOL4L,DRAM2,RBM6,TRMT13,PARVG,KRTCAP2,ZNF862,LRWD1,PISD,IDUA,ARHGEF19,TMEM134,CCDC82,SREK1IP1,POP5,ORAI3,TMEM91,MYL5,NLRP1,CNPY4,EPM2AIP1,TNFRSF14,UCKL1,TLE3,NAP1L4,WDR27,DHRS1,UBXN11,EME2,PTCD1,BSDC1,SSBP3,KHDC4,DCAF15,CROCC,PLXNB1,CERS5,RSAD1,EP400P1,USF2,NCAPH2,HPS4,PNISR,GEN1,RP9,SFPQ,MIER2,RALY,TMEM63A,STON2,ACAP3,FHOD1,TRIOBP,CARD8,ENKD1,FAM3A,ASCC2,ATP5IF1,DUSP18,ZNF10,SRSF7,LRRC14,ATAT1,IFFO1,PLCG1,ZBTB8OS,CEP63,RASSF1,TRMU,TMX3,MYPOP,CTBP1,ANGEL2,BICRA,POMT1,ATXN7L2,SEM1,STMP1,POC5,IQCE,CHTF18,ARF5,AKAP8,CDPF1,MSTO1,POMGNT1,DPY19L2,UBE2J2,TJAP1,NAT14,TAF1D,KATNBL1,MKS1,C1orf35,CEP95,CCDC174,ACAP1,WDTC1,MTIF3,CDK5RAP1,SPIN3,MARCHF9,TMEM150A,BUD23,TBRG1,IFT88,TASP1,SLX4IP,NPRL2,ZCWPW1,EML3,KLHDC4,KLHDC1,AFTPH,CCNL2,FBXO46,DMPK,CLK3,RNPC3,ANKRD10,TENT4A,VPS9D1,GABBR1,CNOT4,CHTOP,HHLA3,ZDHHC8,KANSL3,RFNG,MED25,DDTL,BCAT2,SGSM3,TP53I13,MC1R,TYK2,COQ4,CCNT2,OSBPL7,DHRS12,STX10,SEPTIN1,KAT2A,ECI1,ACBD4,RBPMS,SIPA1,CSTF3,ANKS6,RBM26,PLA2G6,TMEM86B,NR2F6,PURB,RBM25,ENTR1,C1orf131,SLC27A3,CYBC1,FBXW7,CEBPZOS,RHPN1,ENDOV,DPY30,MLH3,SP4,PPIE,CLDN15,SETD6,FAM50A,ITPA,BAD,POLI,SEMA6C,EFNA3,PRPF39,ARMH1,ZNF34,ERMARD,KIAA0753,TRIM45,NDOR1,SRRM2,MIB2,DPEP2,EPC1,WHRN,PIK3IP1,ZNF22,PHF1,MTHFR,GORAB,HDAC10,HEXIM2,TGIF2,CHADL,CEP44,SCRN2,GMFG,RNF208,HSF4,ARGLU1,ANKS3,NOXA1,YJEFN3,SMDT1,CCNL1,RGL3,PIGQ,ANKRD54,ANKRA2,SGSM2,RASSF7,VMAC,TAF10,KRI1,RNF25,CELF1,SCMH1,AMT,RBM45,MICALL2,HSPBAP1,CRYGS,YAE1,DENND2D,DYRK4,HLA-DOB,CENPS,PMS1,FAM160A2,NFIB,EGFL8,PSMG4,ZGPAT,PBX4,TIA1,HOOK2,PEX14,ZNF83,HCN3,RETREG3,TMUB2,NSUN6,ARFRP1,ZNF3,MAGIX,ABCD4,DPH1,BRAT1,CERKL,PELP1,ERCC3,TRAPPC3,PSMG3,SAYSD1,VOPP1,NEIL1,SZT2,ADAMTS13,DDX5,DTX3,KPTN,ZMYND19,MTG2,RNF215,GRIPAP1,PLCB2,MAPK11,NAT9,UBA7,LIPT1,ELF2,ABHD14A,PROCA1,CRAMP1,IGFLR1,LUC7L,WDR6,URGCP,PNN,COA5,BRD8,IRF2BP2,CCAR1,DGKD,CENPJ,C14orf93,CASP8,LRSAM1,DPH7,POU6F1,TRA2A,NSMCE4A,SH3BP5L,CEP131,DUS1L,SH2D3C,NEURL4,PNPLA7,HINFP,NR2C1,CRTC2,AMY2B,APBB3,NRIP2,CNTROB,CYTH2,B9D2,WBP1,RBM33,TRIT1,NOL8,NADSYN1,MOK,IMMP1L,CFAP44,LRCH4,SRRT,AGAP6,GGA3,WRAP73,BET1,GABPB2,GEMIN8,TAF6L,ADAMTS10,TRIM66,RBM39,ODF2L,TNFAIP2,SLC26A6,SLC25A27,PGS1,IRF3,ZCCHC8,SERGEF,PYGO2,NRF1,TMEM44,RRNAD1,ZXDC,CCDC92,WDR91,KAT8,INTS3,TRIM39,PIGL,NEK3,KCTD6,RP11-523H20.5,CSAD,AGAP3,KIAA0895L,LRRC37A3,ARV1,TBC1D10C,NDUFAF6,ATAD3B,SAMD10,CD52,MUTYH,BCL7C,DCAF8,MFSD10,STAG3L5P-PVRIG2P-PILRB,PHYKPL,TMEM259,SF3B1,CACTIN,FRA10AC1,RUFY3,PEDS1,LIN37,OGA,ZFP69,PYCR2,NUP42,IFT27,RECQL5,PAN3,ZNHIT1,PHKG2,NARF,PMF1,SARS2,ZC3HC1,NIPSNAP3B,ARHGAP4,ASB6,POLR2J,PPP1R16A,LRRC75B,SS18L2,TBC1D17,SUPT7L,RALGDS,ARHGAP9,UBE2D4,CENPT,OSGEPL1,CYTH1,ZGLP1,PACS2,PEX1,CRLS1,S100PBP,TRIM3,VAMP2,MTG1,FAM76B,POGZ,ANAPC7,LMF2,ARRDC2,C1orf50,SH2B2,RBM4B,DTWD1,TSC2,DNAJB2,MRPS31,ANAPC2,BEND5,TAF1C,UFD1,ADAT2,WDSUB1,TMEM143,GABRE,TRAPPC14,SAMD1,AAAS,SLC38A6,PRIMPOL,CAPN15,CNKSR1,THAP9,CXXC1,EZH1,SKAP1,MRNIP,MPV17,SS18L1,ELMOD3,DDX17,GSTM2,ING4,HAUS5,SENP7,MTRF1,RSBN1L,RAD52,REC8,CEP43,HDAC7,ARVCF,CEP290,FBXL12,SDR39U1,PGGHG,TELO2,CDAN1,FBXL6,WSB1,TMEM243,STK19,AUP1,PHIP,C12orf76,ANO9,POLL,FAM228B,CBLN3,WASHC1,USP21,TIGD1,KLC1,E2F4,GPS2,TRIM52,THAP3,NOL12,MTFR1L,MOSPD3,LYRM1,CLASRP,DFFB,TTC13,MBD6,CWC25,STK36,HMGN1,TTC32,MOB2,ZMAT1,GOLGA8B,HP1BP3,SPATA33,ALPK1,ACP6,STRADA,SMG9,CCDC88C,CBR4,ZNF18,LZTS2,EIF2D,TMA7,GOLGA8A,CYP2R1,PAM16,TCIRG1,SPIRE2,SETD4,TPRKB,CARD19,RBM48,AARSD1,GMEB2,DUSP28,BOLA1,RBM5,AXIN1,NKTR,CEP162,YPEL3,SAP30BP,MKRN1,CIAO3,VPS16,BCDIN3D,RILPL2,IL2RG,TTLL3,DOT1L,CRBN,SLC25A45,ZNF84,RXRB,PARP6,RHBDD3,WDR33,P3H1,NMRK1,REX1BD,C2CD2,PCMTD1,LRP5L,ASXL1,TSC1,SH3GLB2,DENND4B,FASTK,CYHR1,SIRT6,FBXO42,MAN2C1,DXO,HSPB11,USPL1,LZTR1,ANKRD13D,USP20,LIG1,CCDC57,RABL2B,TRAPPC2,KBTBD2,SIRT7,MRFAP1L1,STK38

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP5-894A10.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PDHX,MRPL49,CNIH1,PRKAR2A,KIF2A,DLST,PSMD2,EIF3L,PRPS1,ATP6V0D1,EIF4G2,NIPA2,ATP5F1A,CHP1,FCF1,PLIN3,BECN1,KBTBD4,ALDOA,USP32,LRP10,MAIP1,NOP9,IQGAP1,UQCRC2,WBP11,KAT5,ITFG1,PCMT1,PLEKHB2,PSMA7,EIF4G1,TUBA1C,STRAP,GANAB,TMED1,SEC23A,TMLHE,SARS1,ZFPL1,VPS18,DPP3,TMBIM6,AIMP2,CCNI,DDB1,PRMT5,AZI2,ATP5PB,GPN1,GLMP,IPO5,RPN2,SLC25A3,CLTC,NOMO2,ALAS1,TARS1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000244701	ENST00000467537	exon_skip_52671	chr10:97461495-97461622	-16.16	-0.1430	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_384420	chr3:49812647-49812738	-12.70	-0.1443	UBA7	ENST00000333486	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_41813	chr10:68337857-68337996	-14.85	-0.1169	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_110959	chr14:20372732-20372857	-12.59	-0.1247	TEP1	ENST00000262715	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_111863	chr14:23565815-23565892	-13.00	-0.2167	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_309204	chr19:49181348-49181461	-13.40	-0.1186	TRPM4	ENST00000252826	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_353131	chr20:58669290-58669453	-22.48	-0.1716	STX16	ENST00000371141	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_370518	chr22:50247691-50247776	-12.97	-0.1729	HDAC10	ENST00000216271	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_382458	chr3:38131595-38131638	-9.86	-0.2988	ACAA1	ENST00000333167	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_442657	chr5:74730259-74730398	-13.11	-0.1008	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_446770	chr5:178215275-178215430	-18.13	-0.1323	PHYKPL	ENST00000308158	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_9446	chr1:147270931-147271005	-9.50	-0.1557	CHD1L	ENST00000369258	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_52701	chr10:97468965-97469104	-16.58	-0.1442	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_53559	chr10:101793912-101793998	-12.36	-0.1741	OGA	ENST00000361464	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_92074	chr12:50142052-50142110	-10.18	-0.3636	CERS5	ENST00000317551	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_95407	chr12:95040475-95040597	-12.39	-0.1050	NR2C1	ENST00000333003	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_114365	chr14:74290026-74290118	-12.89	-0.1719	ABCD4	ENST00000356924	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_133217	chr16:8635038-8635079	-11.11	-0.2924	METTL22	ENST00000381920	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_290158	chr17:42953723-42953778	-6.71	-0.2097	AARSD1	ENST00000427569	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_292904	chr17:69251746-69251866	-10.84	-0.1118	ABCA5	ENST00000392676,ENST00000588877	In-frame
ENSG00000244701	ENST00000467537	exon_skip_300663	chr19:1425877-1425960	-8.04	-0.2772	DAZAP1	ENST00000233078	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_313557	chr19:5786748-5786845	-15.49	-0.1631	DUS3L	ENST00000309061	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_326885	chr2:74490024-74490127	-15.29	-0.1778	TTC31	ENST00000233623	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_327433	chr2:86125794-86125880	-9.10	-0.1123	PTCD3	ENST00000254630	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_358821	chr20:63943652-63943669	-4.37	-0.3362	UCKL1	ENST00000354216	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_374497	chr3:49999439-49999513	-10.41	-0.1707	RBM6	ENST00000266022	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_377198	chr3:123130479-123130616	-15.70	-0.1236	PDIA5	ENST00000316218	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_378467	chr3:143023974-143024018	-10.15	-0.3759	U2SURP	ENST00000473835	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_444499	chr5:138164086-138164133	-5.06	-0.1581	BRD8	ENST00000254900	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_445390	chr5:150403120-150403312	-18.28	-0.1004	CD74	ENST00000009530	In-frame
ENSG00000244701	ENST00000467537	exon_skip_466137	chr7:48103296-48103411	-10.29	-0.1354	UPP1	ENST00000331803,ENST00000395564	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_470226	chr7:103307595-103307708	-10.41	-0.1001	PMPCB	ENST00000249269	Frame-shift
ENSG00000244701	ENST00000467537	exon_skip_509943	chrX:47175018-47175092	-11.92	-0.1611	RBM10	ENST00000377604	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP5-894A10.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000244701	ENSG00000013441	CLK1	BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000100288	CHKB	BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,PAAD,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000100429	HDAC10	BLCA,CHOL,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC	KIRC
ENSG00000244701	ENSG00000102125	TAZ	BLCA,CHOL,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,SKCM,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000102287	GABRE	BLCA,CESC,COAD,HNSC,KIRC,LIHC,READ,STAD,THCA	KIRC
ENSG00000244701	ENSG00000104859	CLASRP	BLCA,BRCA,CHOL,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,PAAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC	KIRC
ENSG00000244701	ENSG00000108773	KAT2A	BLCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,SKCM,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000113108	APBB3	BLCA,BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,PAAD,SARC,SKCM,STAD,TGCT,THCA,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000117616	RSRP1	BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000127415	IDUA	BLCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,LGG,PAAD,THCA,THYM,UCEC	KIRC
ENSG00000244701	ENSG00000127586	CHTF18	BLCA,CHOL,GBM,HNSC,KIRC,KIRP,THCA,UCS	KIRC
ENSG00000244701	ENSG00000132522	GPS2	BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000135722	FBXL8	BLCA,COAD,HNSC,KIRC,KIRP,PAAD,THCA	KIRC
ENSG00000244701	ENSG00000139631	CSAD	BLCA,BRCA,CESC,COAD,DLBC,GBM,HNSC,KIRC,KIRP,LGG,OV,PAAD,READ,SKCM,TGCT,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000167615	LENG8	BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,PAAD,READ,SARC,SKCM,STAD,THCA	KIRC
ENSG00000244701	ENSG00000175265	GOLGA8A	BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,OV,PAAD,READ,SKCM,STAD,TGCT,THCA,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000175455	CCDC14	BLCA,BRCA,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000177595	PIDD1	BLCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,PAAD,SARC,SKCM,THCA	KIRC
ENSG00000244701	ENSG00000184465	WDR27	BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LGG,PAAD,READ,STAD,TGCT,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000185522	LMNTD2	BLCA,DLBC,KIRC,KIRP,PAAD,THCA,THYM,UCS	KIRC
ENSG00000244701	ENSG00000186166	CENATAC	BLCA,BRCA,CHOL,COAD,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,READ,SARC,SKCM,STAD,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000187961	KLHL17	BLCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,SKCM,THCA,THYM,UCEC	KIRC
ENSG00000244701	ENSG00000196123	KIAA0895L	BLCA,ESCA,GBM,HNSC,KICH,KIRC,KIRP,PAAD,SKCM,STAD,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000197774	EME2	BLCA,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,PAAD,SKCM,THCA,THYM,UCEC	KIRC
ENSG00000244701	ENSG00000204149	AGAP6	BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000204305	AGER	BLCA,BRCA,CHOL,COAD,DLBC,GBM,HNSC,KIRC,KIRP,LGG,PAAD,READ,SARC,SKCM,STAD,TGCT,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000214021	TTLL3	BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000215252	GOLGA8B	BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,KIRC,KIRP,LAML,LIHC,PAAD,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC	KIRC
ENSG00000244701	ENSG00000215375	MYL5	BLCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,THCA	KIRC
ENSG00000244701	ENSG00000217930	PAM16	BLCA,CHOL,HNSC,KIRC,KIRP,LGG,PAAD,THCA,THYM	KIRC
ENSG00000244701	ENSG00000221978	CCNL2	BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,PAAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000250067	YJEFN3	BLCA,DLBC,ESCA,GBM,KIRC,KIRP,PAAD,SARC,TGCT,THYM	KIRC
ENSG00000244701	ENSG00000256525	POLG2	BLCA,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,PAAD,READ,SKCM,STAD,THCA,THYM	KIRC
ENSG00000244701	ENSG00000004777	ARHGAP33	BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,PAAD,READ,SKCM,STAD,THCA,UCS	KIRC
ENSG00000244701	ENSG00000069493	CLEC2D	BRCA,CHOL,DLBC,ESCA,GBM,KIRC,KIRP,SARC,SKCM,TGCT,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000130653	PNPLA7	BRCA,DLBC,GBM,KIRC,KIRP,LGG,PAAD,THCA	KIRC
ENSG00000244701	ENSG00000138834	MAPK8IP3	BRCA,CHOL,DLBC,ESCA,KIRC,KIRP,PAAD,SKCM,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000158062	UBXN11	BRCA,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,LGG,PAAD,READ,SKCM,TGCT,THCA,UCS	KIRC
ENSG00000244701	ENSG00000160072	ATAD3B	BRCA,CHOL,GBM,KICH,KIRC,KIRP,LGG,OV,PAAD,THCA,THYM	KIRC
ENSG00000244701	ENSG00000161010	MRNIP	BRCA,CHOL,COAD,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LGG,PAAD,READ,SARC,SKCM,STAD,THCA,UCS	KIRC
ENSG00000244701	ENSG00000167604	NFKBID	BRCA,CHOL,COAD,GBM,HNSC,KICH,KIRC,KIRP,PAAD,SKCM,STAD,THCA,THYM,UCS	KIRC
ENSG00000244701	ENSG00000175309	PHYKPL	BRCA,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,PAAD,SARC,SKCM,TGCT,THCA	KIRC
ENSG00000244701	ENSG00000185189	NRBP2	BRCA,CESC,COAD,DLBC,GBM,KIRC,KIRP,LGG,PAAD,READ,SARC,THCA	KIRC
ENSG00000244701	ENSG00000186088	GSAP	BRCA,CHOL,COAD,DLBC,ESCA,HNSC,KIRC,KIRP,LGG,PAAD,READ,SKCM,STAD,TGCT,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000204681	GABBR1	BRCA,COAD,DLBC,HNSC,KICH,KIRC,KIRP,PAAD,SKCM,THCA	KIRC
ENSG00000244701	ENSG00000273899	NOL12	BRCA,CHOL,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,STAD,TGCT,THCA,THYM,UCEC	KIRC
ENSG00000244701	ENSG00000147437	GNRH1	CESC,CHOL,KIRC,KIRP,LAML,PAAD,THYM	KIRC
ENSG00000244701	ENSG00000010295	IFFO1	CHOL,DLBC,GBM,KICH,KIRC,KIRP,LGG,PAAD	KIRC
ENSG00000244701	ENSG00000061938	TNK2	CHOL,GBM,KIRC,LIHC,THCA	KIRC
ENSG00000244701	ENSG00000065357	DGKA	CHOL,DLBC,KIRC,SKCM,TGCT	KIRC
ENSG00000244701	ENSG00000073605	GSDMB	CHOL,GBM,KIRC,KIRP,LAML,LGG,LIHC,PAAD,SARC,TGCT,THCA,THYM,UCS	KIRC
ENSG00000244701	ENSG00000076928	ARHGEF1	CHOL,DLBC,GBM,KICH,KIRC,KIRP,LGG,PAAD,SKCM,TGCT,THCA,THYM	KIRC
ENSG00000244701	ENSG00000077044	DGKD	CHOL,KICH,KIRC,KIRP,PAAD,SKCM	KIRC
ENSG00000244701	ENSG00000089820	ARHGAP4	CHOL,DLBC,HNSC,KIRC,LGG,PAAD,SKCM,UCS	KIRC
ENSG00000244701	ENSG00000091592	NLRP1	CHOL,DLBC,KIRC,SKCM,TGCT,THCA,THYM,UCS	KIRC
ENSG00000244701	ENSG00000095370	SH2D3C	CHOL,DLBC,KICH,KIRC,SKCM,THCA	KIRC
ENSG00000244701	ENSG00000103326	CAPN15	CHOL,DLBC,GBM,KIRC,KIRP,LGG,PAAD,THCA,THYM,UCS	KIRC
ENSG00000244701	ENSG00000105122	RASAL3	CHOL,HNSC,KIRC,LGG,SKCM,TGCT,UCS	KIRC
ENSG00000244701	ENSG00000105486	LIG1	CHOL,GBM,HNSC,KICH,KIRC,KIRP,LGG,THCA	KIRC
ENSG00000244701	ENSG00000106462	EZH2	CHOL,HNSC,KIRC,KIRP,LAML,PAAD,SKCM	KIRC
ENSG00000244701	ENSG00000113240	CLK4	CHOL,COAD,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,PAAD,READ,SKCM,STAD,TGCT,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000121577	POPDC2	CHOL,DLBC,KIRC,SKCM,THCA	KIRC
ENSG00000244701	ENSG00000123329	ARHGAP9	CHOL,DLBC,HNSC,KIRC,SKCM	KIRC
ENSG00000244701	ENSG00000130755	GMFG	CHOL,HNSC,KICH,KIRC,SKCM,TGCT	KIRC
ENSG00000244701	ENSG00000135723	FHOD1	CHOL,KICH,KIRC,KIRP,PAAD,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000137841	PLCB2	CHOL,DLBC,HNSC,KICH,KIRC,LGG,SKCM,TGCT	KIRC
ENSG00000244701	ENSG00000138964	PARVG	CHOL,HNSC,KIRC,LGG,SKCM,TGCT,UCS	KIRC
ENSG00000244701	ENSG00000139636	LMBR1L	CHOL,DLBC,KICH,KIRC,KIRP,LAML,LGG,PAAD,THCA,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000142102	PGGHG	CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,PAAD,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000157873	TNFRSF14	CHOL,HNSC,KIRC,KIRP,LGG,LIHC,PAAD,SARC,TGCT,THCA,THYM	KIRC
ENSG00000244701	ENSG00000158717	RNF166	CHOL,HNSC,KICH,KIRC,KIRP,LGG,PAAD,SKCM	KIRC
ENSG00000244701	ENSG00000160271	RALGDS	CHOL,DLBC,KIRC,READ,TGCT	KIRC
ENSG00000244701	ENSG00000160999	SH2B2	CHOL,KICH,KIRC,SKCM,THYM	KIRC
ENSG00000244701	ENSG00000161960	EIF4A1	CHOL,COAD,KIRC,KIRP,SKCM	KIRC
ENSG00000244701	ENSG00000167261	DPEP2	CHOL,DLBC,KIRC,TGCT,THYM	KIRC
ENSG00000244701	ENSG00000167702	KIFC2	CHOL,DLBC,GBM,KIRC,KIRP,PAAD,SKCM,TGCT,THCA,THYM	KIRC
ENSG00000244701	ENSG00000167895	TMC8	CHOL,DLBC,HNSC,KIRC,PAAD,SKCM,TGCT,THYM,UCS	KIRC
ENSG00000244701	ENSG00000169592	INO80E	CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,PAAD,READ,SARC,SKCM,THCA,THYM,UCS	KIRC
ENSG00000244701	ENSG00000172890	NADSYN1	CHOL,GBM,KIRC,KIRP,LGG,PAAD,SARC,TGCT,THCA,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000174943	KCTD13	CHOL,DLBC,HNSC,KIRC,KIRP,PAAD,TGCT,THCA,UCS	KIRC
ENSG00000244701	ENSG00000175463	TBC1D10C	CHOL,HNSC,KIRC,SKCM,TGCT,UCS	KIRC
ENSG00000244701	ENSG00000180096	SEPTIN1	CHOL,HNSC,KICH,KIRC,SKCM,TGCT,UCS	KIRC
ENSG00000244701	ENSG00000182325	FBXL6	CHOL,GBM,KIRC,KIRP,LGG,PAAD,TGCT,THCA,THYM,UCS	KIRC
ENSG00000244701	ENSG00000185101	ANO9	CHOL,DLBC,HNSC,KIRC,KIRP,PAAD,STAD,TGCT,UCS	KIRC
ENSG00000244701	ENSG00000185158	LRRC37B	CHOL,GBM,KIRC,KIRP,LAML,SKCM,STAD	KIRC
ENSG00000244701	ENSG00000186827	TNFRSF4	CHOL,HNSC,KIRC,TGCT,THCA	KIRC
ENSG00000244701	ENSG00000197948	FCHSD1	CHOL,COAD,DLBC,GBM,KICH,KIRC,KIRP,LGG,PAAD,SKCM,UCS	KIRC
ENSG00000244701	ENSG00000213445	SIPA1	CHOL,KICH,KIRC,LGG,PAAD,TGCT	KIRC
ENSG00000244701	ENSG00000267796	LIN37	CHOL,HNSC,KIRC,KIRP,LGG,LIHC,THCA,THYM	KIRC
ENSG00000244701	ENSG00000062716	VMP1	COAD,HNSC,KICH,KIRC,KIRP	KIRC
ENSG00000244701	ENSG00000109046	WSB1	COAD,GBM,KICH,KIRC,KIRP,PAAD,READ,SKCM,THCA	KIRC
ENSG00000244701	ENSG00000139597	N4BP2L1	COAD,DLBC,ESCA,HNSC,KIRC,KIRP,LAML,READ,SARC,SKCM,TGCT	KIRC
ENSG00000244701	ENSG00000166012	TAF1D	COAD,KIRC,KIRP,LAML,SKCM,STAD	KIRC
ENSG00000244701	ENSG00000213066	CEP43	COAD,DLBC,ESCA,KIRC,KIRP,LAML,READ,THCA,UCEC	KIRC
ENSG00000244701	ENSG00000105643	ARRDC2	DLBC,KICH,KIRC,KIRP,SKCM	KIRC
ENSG00000244701	ENSG00000142303	ADAMTS10	DLBC,GBM,KIRC,KIRP,LGG,THCA	KIRC
ENSG00000244701	ENSG00000143554	SLC27A3	DLBC,KICH,KIRC,KIRP,PAAD,THCA	KIRC
ENSG00000244701	ENSG00000145014	TMEM44	DLBC,KIRC,KIRP,PAAD,READ,TGCT,THCA	KIRC
ENSG00000244701	ENSG00000178026	LRRC75B	DLBC,KICH,KIRC,KIRP,READ,TGCT,THCA,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000184205	TSPYL2	DLBC,HNSC,KICH,KIRC,THYM	KIRC
ENSG00000244701	ENSG00000213903	LTB4R	DLBC,GBM,KIRC,KIRP,LGG,PAAD,TGCT,THCA,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000044446	PHKA2	ESCA,KIRC,KIRP,PAAD,READ,THCA	KIRC
ENSG00000244701	ENSG00000107281	NPDC1	GBM,KIRC,PAAD,TGCT,THYM,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000162572	SCNN1D	GBM,KIRC,KIRP,LAML,LGG,PAAD,TGCT,THYM	KIRC
ENSG00000244701	ENSG00000164403	SHROOM1	GBM,HNSC,KIRC,LGG,THCA	KIRC
ENSG00000244701	ENSG00000164877	MICALL2	GBM,HNSC,KIRC,KIRP,PAAD,SARC,TGCT,THCA,UCEC,UCS	KIRC
ENSG00000244701	ENSG00000240038	AMY2B	GBM,KIRC,KIRP,LGG,THCA,THYM	KIRC
ENSG00000244701	ENSG00000177989	ODF3B	HNSC,KICH,KIRC,KIRP,PAAD	KIRC
ENSG00000244701	ENSG00000185215	TNFAIP2	HNSC,KICH,KIRC,SKCM,TGCT	KIRC
ENSG00000244701	ENSG00000185386	MAPK11	HNSC,KIRC,PAAD,THCA,THYM	KIRC
ENSG00000244701	ENSG00000102871	TRADD	KIRC,KIRP,PAAD,TGCT,THCA	KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000244701	ENST00000467537	ALAS1	ENSG00000023330	ENST00000493402	-0.2185	410	-	KIRC
ENSG00000244701	ENST00000467537	ATP5F1A	ENSG00000152234	ENST00000593152	-0.1258	431	-	KIRC
ENSG00000244701	ENST00000467537	ATP5F1A	ENSG00000152234	ENST00000282050	-0.1258	431	-	KIRC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID

lncRNA ENST ID

length(AA)

start at transcript

end at transcript

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential