 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | PCDH1,GATA2,GK5,TLE1,ALG12,CEP70,ZNF41,TP53BP1,ZFHX3,ARHGAP12,SLC37A1,MINDY1,ARFGEF1,RGL3,ZFP62,MAP4K3,WDR6,ILDR1,FBXO34,RALGAPA2,ZDHHC23,CRB3,RNF31,SVIP,ATP6AP1,PIGO,AP1M2,WDR5B,P4HTM,EXD2,JMY,GORASP1,SUSD1,MTMR12 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000244300 | ENSG00000011566 | MAP4K3 | BLCA,CHOL,KIRC,LAML,PRAD | CHOL | | | ENSG00000244300 | ENSG00000071553 | ATP6AP1 | BLCA,CHOL,KICH,KIRC,UCS | KICH | | | ENSG00000244300 | ENSG00000129354 | AP1M2 | BLCA,CHOL,KIRC,READ,UCS | CHOL | | | ENSG00000244300 | ENSG00000143409 | MINDY1 | BLCA,CHOL,KICH,KIRC,LAML | KICH | | | ENSG00000244300 | ENSG00000145103 | ILDR1 | BLCA,CESC,CHOL,KICH,KIRC,UCS | CHOL | | | ENSG00000244300 | ENSG00000156453 | PCDH1 | BLCA,CHOL,KICH,KIRC,UCS | KICH | | | ENSG00000244300 | ENSG00000160190 | SLC37A1 | BLCA,CHOL,LAML,PRAD,UCS | CHOL | | | ENSG00000244300 | ENSG00000184307 | ZDHHC23 | BLCA,CESC,KICH,KIRC,UCS | KICH | | | ENSG00000244300 | ENSG00000188559 | RALGAPA2 | BLCA,CESC,CHOL,KICH,KIRC | KICH | | | ENSG00000244300 | ENSG00000198168 | SVIP | BLCA,CESC,KICH,KIRC,LAML | KICH | | | ENSG00000244300 | ENSG00000205517 | RGL3 | BLCA,CESC,CHOL,KICH,KIRC | CHOL,KICH | | | ENSG00000244300 | ENSG00000067369 | TP53BP1 | CESC,CHOL,KICH,LAML,PCPG | CHOL,PCPG | | | ENSG00000244300 | ENSG00000196781 | TLE1 | CESC,CHOL,COAD,KICH,KIRC,UCEC,UCS | KICH | | | ENSG00000244300 | ENSG00000092098 | RNF31 | CHOL,KICH,KIRC,READ,UCS | KICH | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000244300.2 | ENST00000464242.1 | 149 | 1794 | 1345 | | ENSG00000244300.2 | ENST00000468377.1 | 107 | 334 | 657 | | ENSG00000244300.2 | ENST00000473958.1 | 153 | 159 | 620 |
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