Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000244055

Summary for AC007566.10

Gene summary

Gene information	Ensembl ID	ENSG00000244055
	Gene symbol	AC007566.10
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

Top

Structure and expression level for AC007566.10

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000244055	7.466761e+01	1.625953e+00	1.357130e-01	1.198082e+01	4.480000e-33	5.290000e-32	UP	KIRC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000244055	5.220997e-01	2.346171e-04	CHOL	5.621452e-04

Top

lncRNA-Protein interaction for AC007566.10

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000118058	KMT2A	84.99	92.5363	Q03164	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000146247	PHIP	84.69	90.9153	Q8WWQ0	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000168137	SETD5	84.3	91.0607	Q9C0A6	Epi	NA
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000171316	CHD7	80.86	92.3745	Q9P2D1	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000118058	KMT2A	80.15	96.3648	Q03164	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000171316	CHD7	75.14	95.0057	Q9P2D1	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000196199	MPHOSPH8	73.75	90.9199	Q99549	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000185658	BRWD1	69.72	93.1223	Q9NSI6	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000147133	TAF1	61.39	90.7768	P21675	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000104885	DOT1L	59.4	91.8737	Q8TEK3	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000139613	SMARCC2	56.8	94.5117	Q8TAQ2	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000171634	BPTF	56.49	94.6629	Q12830	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000143442	POGZ	56.07	90.3525	Q7Z3K3	Epi	NA
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000167548	KMT2D	54.48	92.5653	O14686	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000167548	KMT2D	51.32	95.4812	O14686	Epi	NA
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000120616	EPC1	45.57	90.1652	Q9H2F5	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000120616	EPC1	44.08	92.8399	Q9H2F5	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000272333	KMT2B	41.42	91.7043	Q9UMN6	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000083544	TDRD3	26.76	90.3231	Q9H7E2	RBP,Epi	NA
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000123636	BAZ2B	105.94	91.1412	Q9UIF8	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000123636	BAZ2B	97.87	94.3805	Q9UIF8	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000054267	ARID4B	84.68	91.8504	Q4LE39	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000032219	ARID4A	83.99	91.4518	P29374	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000005483	KMT2E	76.78	94.0669	Q8IZD2	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000181555	SETD2	75.99	91.5596	Q9BYW2	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000275023	MLLT6	75.72	91.4561	P55198	Epi	NA
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000177200	CHD9	74.64	90.9129	Q3L8U1	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000145241	CENPC	74.54	90.2823	Q03188	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000165288	BRWD3	69.53	90.2347	Q6RI45	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000177200	CHD9	69.44	91.1615	Q3L8U1	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000055609	KMT2C	68.03	95.391	Q8NEZ4	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000076108	BAZ2A	60.29	90.94	Q9UIF9	TF,RBP,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000078403	MLLT10	60.28	93.2021	P55197	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000168769	TET2	57.91	93.776	Q6N021	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000108799	EZH1	55.13	92.0043	Q92800	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000183495	EP400	49.44	93.4747	Q96L91	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000120071	KANSL1	35.66	90.2703	Q7Z3B3	Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000171456	ASXL1	32.14	92.2341	Q8IXJ9	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000123636	BAZ2B	105.94	91.322	Q9UIF8	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000102189	EEA1	98.7	92.02	Q15075	TF	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000123636	BAZ2B	97.87	94.4441	Q9UIF8	TF,Epi	NA
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000118058	KMT2A	84.99	92.3396	Q03164	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000118058	KMT2A	80.15	96.3282	Q03164	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000076108	BAZ2A	60.29	90.8631	Q9UIF9	TF,RBP,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000104885	DOT1L	59.4	91.986	Q8TEK3	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000147124	ZNF41	58.79	90.2341	P51814	TF	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000168769	TET2	57.91	93.6962	Q6N021	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000171634	BPTF	56.49	94.6931	Q12830	TF,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000167232	ZNF91	52.86	90.8359	Q05481	TF	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000117000	RLF	47.86	93.4141	Q13129	TF	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000196670	ZFP62	45.57	90.4556	Q8NB50	TF	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000272333	KMT2B	41.42	91.7173	Q9UMN6	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000198000	NOL8	67.38	90.9094	Q76FK4	RBP	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000137776	SLTM	63.22	91.9614	Q9NWH9	RBP	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000076108	BAZ2A	60.29	90.9367	Q9UIF9	TF,RBP,Epi	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000162775	RBM15	57.15	91.8438	Q96T37	RBP	ENCODE
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000133226	SRRM1	28.45	93.5377	Q8IYB3	RBP	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000083544	TDRD3	26.76	90.2597	Q9H7E2	RBP,Epi	NA
ENSG00000244055	ENST00000427458	AC007566.10	ENSG00000167978	SRRM2	23.0	95.5503	Q9UQ35	RBP	NA
ENSG00000244055	ENST00000441539	AC007566.10	ENSG00000167978	SRRM2	21.13	96.9146	Q9UQ35	RBP	NA

Top

lncRNA-DNA interaction for AC007566.10

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for AC007566.10

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PSMB5,CFL1,ATP6V0D1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000244055	ENST00000441539	exon_skip_382458	chr3:38131595-38131638	-4.85	-0.1244	ACAA1	ENST00000333167	Frame-shift
ENSG00000244055	ENST00000441539	exon_skip_300663	chr19:1425877-1425960	-8.58	-0.1208	DAZAP1	ENST00000233078	Frame-shift
ENSG00000244055	ENST00000427458	exon_skip_327433	chr2:86125794-86125880	-5.16	-0.1985	PTCD3	ENST00000254630	Frame-shift
ENSG00000244055	ENST00000427458	exon_skip_442657	chr5:74730259-74730398	-9.99	-0.3568	GFM2	ENST00000296805,ENST00000509430	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for AC007566.10

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000244055.1	ENST00000427458.1	89	712	981
ENSG00000244055.1	ENST00000441539.1	140	501	79

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential