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lncRNA: ENSG00000244041

Summary for LINC01011

Gene summary

Gene information	Ensembl ID	ENSG00000244041
	Gene symbol	LINC01011
	Gene name	long intergenic non-protein coding RNA 1011
	HGNC	33812
	Entrez ID
	Gene type	lincRNA
	Synonyms	LINC01011\|06p25.2
	UniProtAcc

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Structure and expression level for LINC01011

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000244041	1.140903e+02	2.035541e+00	2.614239e-01	7.786362e+00	6.900000e-15	1.690000e-13	UP	CHOL

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000244041	6.438654e-01	1.828017e-06	CHOL	2.650625e-05

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lncRNA-Protein interaction for LINC01011

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000154832	CXXC1	43.06	92.2369	Q9P0U4	TF,Epi	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000010803	SCMH1	36.09	91.0811	Q96GD3	TF,Epi	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000154832	CXXC1	33.2	94.2694	Q9P0U4	TF,Epi	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000112511	PHF1	2.02	91.9341	O43189	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000130254	SAFB2	60.94	94.1449	Q14151	TF,RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000154832	CXXC1	43.06	92.1012	Q9P0U4	TF,Epi	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000236287	ZBED5	40.99	91.92	Q49AG3	TF	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000010803	SCMH1	36.09	91.4401	Q96GD3	TF,Epi	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000147789	ZNF7	35.35	93.9723	P17097	TF	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000198040	ZNF84	33.41	94.3775	P51523	TF	ChIP-seq
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000169740	ZNF32	20.29	91.5191	P17041	TF	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000102878	HSF4	9.96	90.4416	Q9ULV5	TF	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000256223	ZNF10	8.22	93.7778	P21506	TF	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000196378	ZNF34	4.94	94.3972	Q8IZ26	TF	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000275111	ZNF2	3.52	91.1034	Q9BSG1	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000167967	E4F1	54.83	92.1206	Q66K89	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000130254	SAFB2	52.92	96.0645	Q14151	TF,RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000099326	MZF1	45.24	93.4615	P28698	TF	ChIP-seq
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000154832	CXXC1	33.2	94.4186	Q9P0U4	TF,Epi	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000196670	ZFP62	32.71	94.4076	Q8NB50	TF	NA
ENSG00000244041	ENST00000445000	LINC01011	ENSG00000256223	ZNF10	29.99	92.8927	P21506	TF	NA
ENSG00000244041	ENST00000445000	LINC01011	ENSG00000102878	HSF4	29.44	93.5613	Q9ULV5	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000147789	ZNF7	28.71	94.2694	P17097	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000198040	ZNF84	28.2	94.8886	P51523	TF	ChIP-seq
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000169740	ZNF32	17.12	91.0594	P17041	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000065029	ZNF76	16.96	92.6326	P36508	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000256223	ZNF10	8.68	92.941	P21506	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000204304	PBX2	7.26	91.9259	P40425	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000167766	ZNF83	5.83	92.4508	P51522	TF	ChIP-seq
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000154957	ZNF18	5.42	90.4065	P17022	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000196378	ZNF34	5.13	94.0793	Q8IZ26	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000250571	GLI4	3.94	92.133	P10075	TF	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000112511	PHF1	2.02	92.0721	O43189	TF,Epi	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000275111	ZNF2	1.93	92.9906	Q9BSG1	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000130254	SAFB2	52.92	95.7793	Q14151	TF,RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000004534	RBM6	52.34	95.949	P78332	RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000139746	RBM26	43.1	93.821	Q5T8P6	RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000100201	DDX17	34.61	92.1607	Q92841	RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000100650	SRSF5	22.86	91.1306	Q13243	RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000164548	TRA2A	22.0	90.3842	Q13595	RBP	eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000150316	CWC15	13.55	91.9031	Q9P013	RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000205937	RNPS1	11.68	91.7836	Q15287	RBP	NA
ENSG00000244041	ENST00000454015	LINC01011	ENSG00000204356	NELFE	8.66	92.1986	P18615	RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000004534	RBM6	61.1	94.2084	P78332	RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000130254	SAFB2	60.94	93.972	Q14151	TF,RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000139746	RBM26	49.88	94.3609	Q5T8P6	RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000100201	DDX17	39.41	92.1242	Q92841	RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000100650	SRSF5	25.77	90.4215	Q13243	RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000150316	CWC15	17.07	90.2423	Q9P013	RBP	NA
ENSG00000244041	ENST00000605901	LINC01011	ENSG00000204356	NELFE	12.31	94.9196	P18615	RBP	NA

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lncRNA-DNA interaction for LINC01011

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC01011

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000244041	ENST00000605901	exon_skip_41841	chr10:68756272-68756483	-18.99	-0.1043	CCAR1	ENST00000265872	Frame-shift
ENSG00000244041	ENST00000445000	exon_skip_115696	chr14:99461191-99461340	-17.61	-0.1295	SETD3	ENST00000331768	Frame-shift
ENSG00000244041	ENST00000454015	exon_skip_382458	chr3:38131595-38131638	-7.39	-0.3889	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for LINC01011

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000244041.6	ENST00000450238.4	70	210	1
ENSG00000244041.6	ENST00000445000.2	151	691	236
ENSG00000244041.6	ENST00000605901.1	431	1298	3
ENSG00000244041.6	ENST00000454015.1	106	553	233

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential