 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,AGAP6,FAAP100,ATAT1,GLI4,SH2B1,PRR3,UBE2G2,CHTF18,PPOX,N4BP2L2,DMTF1,TAF1D,CSAD,INO80D,NDUFAF6,BIVM,DCAF8,SLX4IP,DDX55,KLHDC4,CCNL2,METTL5,MIX23,CAPN10,CENATAC,OGA,MSANTD2,THOC1,RECQL5,CCDC14,WDR59,TFAP4,ACBD6,TNK2,ZBED5,CENPT,OSGEPL1,TTC14,CCNT2,CFAP410,POGZ,ANAPC7,KAT2A,LTO1,BRWD1,RBM4B,ANKS6,CSTF3,METAP1D,PCNT,C21orf58,RNPS1,CLK2,ZBTB3,ADAT2,RBM25,POLG2,ENDOV,AAAS,THAP9,WDR83,PRPF39,ERMARD,RABL2A,DHPS,SS18L1,RPAIN,PCED1A,ACYP1,HAUS5,CEP43,DYNLT2,CFAP298,ACIN1,DYRK1A,ZC3H8,ANKS3,ARGLU1,YJEFN3,C3orf62,PAXBP1,ZFP62,ALKBH2,FNBP4,KRI1,TIGD1,C12orf73,DONSON,TRIM52,PMS1,ATG14,CLASRP,POGLUT1,STK36,TTC32,TIA1,ZMAT1,ZNF83,GOLGA8B,HEMK1,NSUN6,DCUN1D2,GOLGA8A,C2orf68,SOX12,SETD4,RBM6,GIGYF1,FAM193B,TMCO6,DUSP28,RBM5,NKTR,CRAMP1,LUC7L,ARHGAP33,MBTD1,PNN,COA5,DNASE1,TTLL3,HEXD,ZNF84,KLHL23,LSS,TTC3,WDR27,WDR33,TESMIN,CEP131,HINFP,KHDC4,SLC19A1,CERS5,RSAD1,TSC1,HPS4,PNISR,SFPQ | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,CLASRP,POGLUT1,LUC7L,TCTE3,SFPQ,PCNT,TMCO6,HEMK1,C21orf59,RAD9A,C3orf62,TIA1,ING5,STK36,RBM5,ATAT1,KLHDC4,OSGEPL1,ZMAT1,BRWD1,DHPS,HAUS5,RNPS1,KIAA0907,KRI1,TFAP4,C21orf58,MTL5,KAT2A,CEP131,ZNF83,METTL22,SETD4,POGZ,RBM6,ALKBH2,C2orf68,PRPF3,OXLD1,ZNF30,ARGLU1,ERMARD,WDR83,METTL5,MDM4,INO80D,STX16 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ACTN4,EHD4,CAP1,ANXA2,CDKN1A | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000239415 | ENSG00000137343 | ATAT1 | CESC,COAD,LAML,LGG,THYM,UCEC | COAD | | | ENSG00000239415 | ENSG00000132680 | KHDC4 | COAD,LAML,LGG,OV,PCPG,PRAD,READ,UCEC,UCS | READ | | | ENSG00000239415 | ENSG00000132749 | TESMIN | COAD,LAML,READ,UCEC,UCS | READ | | | ENSG00000239415 | ENSG00000165138 | ANKS6 | COAD,LAML,LGG,READ,UCS | COAD,READ | | | ENSG00000239415 | ENSG00000166012 | TAF1D | COAD,LAML,LGG,PCPG,PRAD | COAD | | | ENSG00000239415 | ENSG00000175265 | GOLGA8A | COAD,LGG,OV,PRAD,TGCT,UCS | COAD | | | ENSG00000239415 | ENSG00000184465 | WDR27 | COAD,LAML,LGG,OV,TGCT,UCS | COAD | | | ENSG00000239415 | ENSG00000184786 | DYNLT2 | COAD,LAML,LGG,THYM,UCEC,UCS | COAD | | | ENSG00000239415 | ENSG00000189007 | ADAT2 | COAD,LAML,READ,TGCT,THYM,UCEC,UCS | COAD,READ | | | ENSG00000239415 | ENSG00000215252 | GOLGA8B | COAD,LGG,PCPG,PRAD,TGCT,UCS | COAD | | | ENSG00000239415 | ENSG00000256525 | POLG2 | COAD,LGG,PRAD,READ,THYM | READ | | | ENSG00000239415 | ENSG00000173638 | SLC19A1 | LGG,OV,PRAD,READ,THYM | READ | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000239415 | ENSG00000166432 | ZMAT1 | ENSG00000132716 | DCAF8 | 5 | LAML,LGG,PCPG,PRAD,TGCT | | ENSG00000239415 | ENSG00000167766 | ZNF83 | ENSG00000132716 | DCAF8 | 5 | COAD,OV,PCPG,PRAD,TGCT | | ENSG00000239415 | ENSG00000166432 | ZMAT1 | ENSG00000007392 | LUC7L | 5 | LAML,LGG,PCPG,PRAD,TGCT | | ENSG00000239415 | ENSG00000166432 | ZMAT1 | ENSG00000185917 | SETD4 | 5 | LAML,LGG,PCPG,PRAD,TGCT |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000239415 | ENST00000447037 | CDKN1A | ENSG00000124762 | ENST00000373711 | -0.1133 | 319 | - | COAD,READ | | ENSG00000239415 | ENST00000430259 | CDKN1A | ENSG00000124762 | ENST00000373711 | -0.2669 | 66 | - | COAD,READ |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000239415.1 | ENST00000447037.1 | 49 | 53 | 202 | | ENSG00000239415.1 | ENST00000430259.1 | 67 | 562 | 359 |
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