 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,GSTM3,VAMP1,MFSD8,ATL2,RGS10,SRP19,TAP2,TMEM106C,VAMP4,TDP2,TMEM184C,HLTF,UTP18,SENP1,GPATCH11,METTL5,WDR5B,DTYMK,FAM200A,TRIM5,COMMD7,FAM133B,DOK1,TBK1,TTC14,RAB10,SH3GLB1,STX18,CD74,DNTTIP2,SPTY2D1,SNUPN,FAM220A,SDF2,CBX3,MPLKIP,PSIP1,UBD,TIMMDC1,ZBTB6,OTULIN,GTF3C2,HSPE1,TMEM243,CDKN2AIPNL,CD164,MIS12,INO80E,HERPUD2,H2AZ1,NEMP1,MIS18BP1,HLA-DRB5,CENPA,PAIP1,RPP38,C18orf21,RAB5A,C22orf39,C12orf73,DONSON,MBD4,CMPK2,CPOX,PHC3,BTF3L4,AIDA,CPVL,INTS2,UBXN2A,CDKN2C,SLU7,IL18,ERGIC2,BUB3,IRAG2,SMARCAD1,HMGN3,STX6,GTSE1,CIR1,PDRG1,DMAC2L,GNA15,TIFA,LYSMD1,FAM204A,CCDC34,PGGT1B,IKZF3,GCA,RCHY1,SWT1,TMEM168,FANCL,TTC17,NEMP2,THOC3,IGSF6,VEZF1,GSK3B,INO80D,ICE2,ENOPH1,CRLF3,KPNA1,RASAL3,CIP2A,DNAJC21,LSM3,RIOX2,TRNT1,C1QC,AGA,KIAA1143,DENND6A,IFT74,HDGF,CD48,CBLB,ATXN10,AP1AR,RPA2,FAAP24,TAF8,FEN1,LCP2,POLR3K,SLC25A46,PSMD14,ANAPC13,SEMA4D,DDX20,RFC4,XRCC4,LIN54,LRIG2,FBXO8,PARP2,SNAP23,SERPINB1,IKBKB,SRBD1,SCIMP,KCTD18,NXT1,LXN,SUMO3,TPM3,ATG14,PWWP2A,PSME1,PSMB10,NAA50,UCHL5,MYNN,AK6,RPE,LINS1,ZFR,SNX5,TMEM199,APOL2,SCAF11,ANKEF1,PUS10,TMEM167A,DIABLO,PARVG,TXNDC9,SNX6,CD3D,UEVLD,CENPL,TYW1,ANKMY2,PRKAG1,PPCDC,MTRF1L,LAIR1,KHDC4,NCK1,PTPN7,CCDC51,UNC119B,PIK3CA,AMZ2,LMLN,ATAD2B,DUT,NMNAT3,PREPL,ESCO1,RASSF1,PBX2,ANGEL2,ATPSCKMT,ETV7,RIT1,XRCC6,METTL15,DARS1,DTD2,UVRAG,SMARCE1,TASP1,STARD7,TAF12,AFTPH,DHFR2,EFCAB7,PCED1B,MYCBP,MARCHF7,FYTTD1,BARD1,RPS6KB1,C15orf40,TIMM9,SH3BGRL,SNX20,DSCC1,ALG5,INIP,CCDC32,DDX60,MPHOSPH9,SP100,TXNDC12,TMEM209,RBM26,SNRPD3,NDUFB5,MRPL35,CCNH,TMEM19,CYBC1,CEBPZOS,KANSL1L,GEMIN6,SNW1,PABIR2,CENPC,ATRAID,MARCKSL1,C2orf49,POLK,RAD51C,PLEKHA3,DCAF12,HSPBAP1,RBL1,COX7A2L,VEZT,MFNG,UCK2,METTL6,TIA1,TAPBPL,SPCS3,RRAGC,CDK2,SLBP,CERKL,ERCC3,VOPP1,E2F1,UBA7,DYM,CXCR6,LSM2,PCNA,PTBP3,BRD8,RUNX3,ERCC8,TMCC1,UBE2V1,SLC9A7,APEX2,BROX,C8orf76,APPL1,NOL8,BUB1,TMEM237,FPGT,SH2D2A,TATDN3,SCFD1,EXOC5,EAF2,ERICH1,RFX5,ZNF2,HSBP1,POLE3,CHCHD7,TBC1D10C,MAP3K2,GPATCH2,CD52,MUTYH,CSE1L,BECN1,LARP7,CWC22,C2orf42,GYG1,DCAF16,MORC3,PEX1,CHORDC1,S100PBP,HEXA,ARF4,EMB,CHTF8,DTWD1,RB1,TEFM,TCEANC2,RNASEH2B,CGAS,THAP9,SKAP1,LIPT2,MPV17,THAP6,DYNC1LI1,SEC62,GGPS1,CSTF1,NECAP2,KLHL12,SENP7,MTRF1,TRIP11,TRPM7,GTF2E1,TRAPPC8,FAM216A,IL18BP,ARSK,WDR41,GAB3,ACRBP,PHIP,RWDD2B,FUNDC1,YME1L1,LRRC58,PPP1R21,LYRM1,TM2D1,HP1BP3,GIMAP6,VPS13C,NLRC3,CBR4,WASHC5,RAB2A,CYREN,MPEG1,FKTN,DUSP28,PUM2,BOLA1,DHX36,BCDIN3D,TOMM5,ZCCHC7,TYMS,GBP4,RCSD1,COPS8,ARMC1,NEDD1,C3AR1,GNGT2,ARHGEF6,MRPL38,STK38,KRCC1,MGAT4A,ARL16,MRM2,TXNL4B,CENPK,RB1CC1,CILK1,FASTKD3,PPP2CA,CMC2,TANK,DMTF1,MKNK1,ANKRD44,ZDHHC23,DCK,CD69,HSDL1,RFTN1,VMP1,GMFB,SNAPC1,APTX,OSER1,LZTFL1,ARAP2,CHMP5,POLR2K,LBR,ZBED5,HBS1L,IK,CREB1,ADAM10,SMAD2,PDE7A,ERAL1,SKAP2,WDR70,RNF19A,RAPGEF6,CLIC2,POLG2,PRCC,CXCL10,JAK3,TRIM37,AGBL5,ITGB3BP,GABPB1,NASP,ARMC10,ACYP1,FBXO38,TBCCD1,IFT172,PRKACB,SKP2,ZWINT,EIF2A,PRMT9,SLC35A3,C9orf72,ZBED8,ZMAT2,HLA-DMA,CHD9,HACD2,PARL,PIGN,HPS5,APIP,PRPF38A,UBE2E1,POGLUT1,MLLT3,MRPL32,EPSTI1,MED8,C6orf62,PAN2,C2orf76,LRTOMT,SLFN13,TK1,STAG2,PDK1,PKN2,CENPH,CXCR3,SNX4,GLRX,METTL4,SPCS1,DCLRE1A,TAGAP,RARRES1,HDDC2,SIAH2,HDAC8,ALG1L,SKP1,EAPP,ALKBH3,ATF7IP,PIP4K2A,THOC7,METTL18,MOSPD2,HERC4,RSL24D1,IQCC,SKA2,CCR1,RAB28,TRMO,PDCD10,COPB1,EMG1,MED7,LCORL,DGKA,NFU1,CEP57,METAP1,SPICE1,SAMD9,IFTAP,AMD1,MORF4L1,MRPL49,SHQ1,GBP3,GLMN,METTL21A,EXD2,C1QB,THOC1,UBA6,ACAP2,DNAJC8,ODR4,NDC1,UNG,AP5M1,NUDT3,TMEM138,NCKAP1L,DENND11,LYSMD3,TRAF1,CD247,FNBP1,TMEM251,DNAJB11,ASCC1,SRP54,HMGB1,METTL23,TRMT2B,C17orf75,TASL,ATP6V1C1,DYNLT2,QRSL1,TMEM182,THAP1,PLOD2,MBLAC2,GOLT1B,CEP85,ARHGDIB,PHF11,TPGS2,MCOLN2,PEX13,CIAO2A,CHRAC1,METTL14,RABL3,HEMK1,PRAM1,TRIM22,IFT20,HAUS1,PSMG2,SLC41A3,IL4I1,PIGK,CCDC82,POP5,RASSF5,TXNRD3,RAD51,FKBP3,FBXO30,GTPBP8,HAVCR2,SFT2D1,CARD8,GOPC,CENPU,LRIF1,C11orf1,TAP1,ZBTB8OS,TMX3,UBE2B,MDM1,ASPM,FMNL1,CCDC174,ACAP1,LYSMD2,MCM2,TBRG1,C14orf119,NPRL2,SUV39H2,PPP1R12A,VAMP8,RNPC3,CSF1R,CCSAP,STAU2,CCNT2,ORC3,CENPQ,SEPTIN1,NEK2,SERP1,MARCHF1,ATP13A3,C1orf131,VAMP5,FAM162A,PRIM1,RESF1,SIRPG,ARL6IP5,E2F6,RNF114,EPC1,TMEM69,HEXIM2,MRPS22,MAP3K7,NEPRO,POLQ,CX3CR1,TCF19,CEACAM21,SRPK2,IRF2,MFSD11,PNRC1,CCDC90B,TTC7A,VMAC,ORC5,FCHSD2,TMEM161B,SDCCAG8,CENPS,NSMAF,ATAD2,DENND1B,ADAM17,MCUB,PLCG2,RFX3,UBA3,STAT1,TMEM68,C3orf38,CYLD,ZCCHC10,PARP8,HELZ,ELF2,NDUFA5,TMEM65,CWF19L1,COA5,CACUL1,SSBP1,SAR1A,EIF1B,PMS2,LZIC,DPH5,FZD6,NR2C1,BDH2,CISD2,AVL9,ZDHHC21,WDR37,SEC22C,FN3KRP,DNAAF2,ATG5,BOLA3,TADA1,MSL2,SLFN5,POT1,TMEM267,RRNAD1,AASDH,RABGAP1L,NDUFAF6,TRANK1,HAUS8,BANF1,PHYKPL,SF3B1,ANKIB1,PRKRA,HAX1,ZFP69,NARF,BUD31,ADA,ATP11B,PTPMT1,ARHGAP9,UBE2L6,IAH1,MTPN,USP24,IMMP2L,LSM4,FBXO45,AKAP10,RBM4B,C21orf58,WDSUB1,ORC4,FUBP1,MTBP,SLC38A6,NMD3,HMGB2,DDX17,PSMA4,HAUS5,UBTD2,ELOC,MRPS33,CHMP2B,TBC1D7,EPB41,CTDSPL2,TMEM165,GNPDA2,CYRIB,LAT2,LIN52,SMC6,HAUS4,TRAIP,RHEB,C16orf87,DLG1,ABCC5,CRYZL1,ARMC7,ATP6V1E2,ABHD3,ALPK1,CBWD2,SPATA24,CPSF3,TSNAX,FAM118B,SEPTIN7,CEP162,DNASE2,IL2RG,CRBN,ZNF84,CCP110,STK10,PDCD6,KIF15,HACD4,SLFN11,SSR3,PCMTD1,ADAP2,TMEM35B,NGLY1,ASB8,TRMT10A,MRFAP1L1,ATF2,DLGAP5,PPA1,COPS7B,PEX2,HELQ,COPS2,ERI2,OXNAD1,PRPSAP2,CSNK1G3,CCR5,TMEM234,ATP6V1A,MCM7,SPATA13,TRIQK,IPP,ATP5MG,CHM,PIR,LRRC42,WDCP,SLC25A40,TMC8,TIMELESS,CCDC14,CD27,GNG10,EIF2B5,GMPR2,XXYLT1,ACTR6,UBA2,KNTC1,SVBP,GKAP1,TRIM59,SLC33A1,ATR,GIT2,TMEM106A,HSPA13,RAMAC,OGT,RCCD1,ERI3,BLZF1,FBXO5,TUT4,RBM15,ANAPC10,MBD2,BBIP1,CLK1,ATXN7,WASHC3,TREM2,CD84,VTI1A,SLC7A7,RDH14,CCDC28A,LPCAT2,BIN2,ORMDL1,CENPM,CCDC191,PPP4R2,TAF1A,UNC13D,RMI1,SCRN3,FAM114A2,PLS1,NR1H3,TMEM126B,MBTD1,HLA-DQB2,COMMD8,COA6,IFT122,CEP192,TMEM14A,GABARAP,JKAMP,HSD17B7,SDHD,RARS2,OARD1,PIK3R4,FAM172A,THADA,CEP20,TNFSF10,PRR3,ACTR3,NICN1,NEK11,WDR53,PPWD1,SLC30A7,SASS6,TRIM65,COX16,ASTE1,MRPS28,HPF1,KRIT1,VPS50,PSMB9,ZZZ3,HMGN2,CD8A,TAMM41,PARP12,SPACA9,TRIM13,FGFR1OP2,POLD4,TBCA,CWC15,MED6,MLF1,CTBS,FBXO3,PDCD1,MPC2,CEP70,NDC80,LY75,CASP4,COA1,MOGS,FNBP4,TOMM22,PTRH2,TMF1,SSH2,LAG3,MED23,UNC50,CLEC2D,MTIF2,SUMO2,DAD1,MRPS9,ZNF720,CLEC2B,SYTL3,GIMAP8,PYURF,PLGRKT,GPBP1,MFF,LSG1,DRAM2,FRG1,ZFAND6,CDK19,ARID4A,PIGF,RNF115,SYF2,RAC2,ACP1,VCPIP1,NSL1,FAM104A,RAB29,CCDC71,DTNBP1,TFDP2,SLC25A19,PNISR,GEN1,HARBI1,MACIR,FBXO9,MORN2,RNF149,CD180,CEP120,TRMU,GZMH,TACC3,PSMA2,WASHC2C,STMP1,FAM214A,N4BP2,ARID2,TTC5,MALT1,YEATS4,DBR1,LHFPL2,CDC45,PPP4R3B,OBI1,CHTOP,TATDN1,LSM5,TCEAL1,CCDC50,COX18,ALG14,RPL39L,UBE2W,PHTF2,CLDND1,C5orf22,PDCD2,P2RY8,DPY30,SPRTN,SF3B6,LIN9,PGAP2,PRPF39,SLC4A7,CMTR2,GORAB,CEP44,GMFG,SMDT1,GMCL1,C10orf88,SLC9A9,ANKRA2,BTK,CDC40,OGG1,PMS1,ERAP1,C5orf34,TRAPPC3,RBBP5,COPB2,ABHD10,GIN1,FASTKD2,PLCB2,STK4,NTAQ1,IGFLR1,NUDCD2,RAP2B,ADAMDEC1,CASP3,CCAR1,PTP4A2,CENPJ,C14orf93,CCL5,NSMCE4A,CKLF,SLC10A7,HINFP,XPA,KLHL8,NANP,GTF2H3,IFIH1,CTSS,YPEL5,ANAPC16,RAD17,PDCL,NUP133,BET1,PSMD6,MOB1A,RBM39,PGS1,ARMCX6,NME7,TMEM44,BLOC1S6,IQCB1,PRTFDC1,ERH,EFCAB14,RBM28,C2CD5,EME1,FRA10AC1,LST1,OGA,PYCR2,NUP42,PAN3,MED28,ARHGAP4,CSF3R,DDX59,COPS5,ISCA1,TTK,C1GALT1C1,OLA1,SCLT1,DPP8,FAM217B,FAM76B,CXCR4,YAF2,VPS29,PPCS,H2AZ2,FBXO33,SIT1,STK17A,ING4,APOL3,TMEM9B,RSBN1L,CEP290,GZMK,RAD21,WSB1,RSPRY1,WDR61,USP21,TRIM52,TTC13,TMEM230,LMBRD2,B2M,TPRKB,TFRC,SFMBT1,TRMT61B,SDAD1,PRPSAP1,TUBD1,CDCA7L,IFI35,FRYL,TBC1D31,NSUN3,MACROH2A1,EBI3,RABL2B,RNF141,XRN1,TTF2,BRD7,WDR89,IFT52,SLC50A1,STX7,HMCES,CCDC88A,N4BP2L2,TXNDC16,DCLRE1C,OXSM,FBXL4,CACYBP,UNKL,CALHM6,WWP1,FAM120AOS,IRAK4,NBN,STK16,RHOT1,TP53INP1,KLHL28,VIRMA,CLK4,GIMAP7,COMMD2,AMN1,ZUP1,LCK,UBE2T,PPP1R3D,KDM5A,SDHC,FAM104B,GTF2H5,MLKL,LIX1L,ARID4B,FANCD2,LYPLAL1,IL15RA,TOP2B,TMEM39B,CBY1,MAP4K1,USF1,UBLCP1,HS2ST1,H3-3A,SLC35A5,SNX3,CBX1,MIER1,RASGRP1,TTC21B,GET1,NPAT,FANCF,HDAC3,ILF2,NIP7,ZFP62,SOCS4,RUVBL1,PSMC2,SRSF2,DOK3,SKIL,RSRC1,NT5C3A,FIGNL1,TLR1,CD72,AOAH,CCDC186,ZFC3H1,MIOS,NFYB,PFN2,SP3,RPA3,TMEM50B,DPH3,SVIP,PALB2,FMNL3,HLA-DMB,SLF1,MAX,DEF6,CUL3,RTRAF,ATM,IFT57,NDUFB3,RBBP7,CDK13,ZC3H10,DBF4,RELCH,RSBN1,CYB561A3,RBM27,ATG12,C16orf54,PIBF1,LAMTOR3,RHOA,MOB1B,MIX23,SMARCB1,ACYP2,PARP11,GCFC2,TMX2,AKNA,ASF1A,RPA1,EZH2,PIK3AP1,SNRNP48,RC3H1,UBE2J1,ZNF44,SMG1,TAF7,CCDC138,ABHD12,KANSL2,ELP4,DNAJB14,IFT80,NUP210,PHTF1,OIP5,UBN2,ABHD18,ABTB1,CREBRF,C11orf98,C4orf33,CIITA,PRKD3,ZC3H8,SLC38A9,EPS15,TMEM186,FNTA,MASTL,TADA2A,DCAF6,WDR76,TRADD,CYB5R4,COP1,LRR1,G2E3,PTPN22,GSAP,BTBD10,DOCK8,C2orf68,WAC,TRMT13,RPS23,ORAI3,VPS54,LYRM7,RYK,TNFRSF14,EPM2AIP1,LSM1,PSME3IP1,CASP1,MPPE1,PHF5A,RIPK2,CEPT1,DMXL2,SIGLEC10,NCBP2,SRSF7,TBC1D15,CEP63,NAGK,WDR11,CEP57L1,CDPF1,FANCG,MRPL47,SIGLEC1,MTIF3,MSR1,PIGC,GABPA,SLX4IP,GATAD1,TTC30B,CCDC115,IRF1,LRCH3,MSL3,BPNT1,PTCD3,ATP6V1H,RAD1,BRWD1,SIPA1,NIN,CSTF3,TIGD6,NAPEPLD,VSIG4,C12orf65,VAV1,TBCK,BBS10,ARHGEF3,SP4,RBM43,ARL5A,OSBPL11,TMEM41B,VPS41,PSMB8,DPEP2,TMEM128,ASF1B,RBM41,CWC27,GON7,CIAO1,POLR2D,CCNL1,TLK1,ANKRD54,SUMO1,VPS33A,TMEM60,RBM45,NFXL1,YAE1,DENND2D,NSMCE2,B3GALT4,NR2C2AP,RNFT1,GEMIN2,DCUN1D1,ABI1,SPOP,MED4,PRUNE1,DDX58,CLEC7A,TMUB2,RMDN1,ZNF3,MOCS2,HAUS6,PTPN2,PCYT1A,RILP,C12orf4,DDX5,MRPS10,PPP2R5E,LIPT1,CWF19L2,PDE6D,IL2RB,PNN,DSN1,MICOS10,C1orf54,KATNA1,BBS4,CBX8,RPS13,REV1,PREX1,RWDD2A,IMMP1L,LYPLA1,GAL3ST4,TPRA1,CHEK2,GABPB2,CEBPA,TMEM167B,ODF2L,ZMYND15,BLNK,TBL1XR1,NRF1,SLA2,ZXDC,COQ5,HLA-DRB1,ARHGAP30,ZC3H7A,USP39,MIF4GD,DDX39A,HJURP,MAP3K4,LIPA,CEP350,CENPN,CLASP2,EMC3,SS18L2,SUPT7L,HLA-DOA,RICTOR,AP3S1,ARL6,OSGEPL1,CYTH1,RBM4,URI1,ANAPC7,VNN2,TMIGD3,CYTIP,UFD1,PAFAH2,ARPC5,COX17,MAFB,PRIMPOL,RAB22A,ELMOD3,TTLL1,PPP2R3C,MPP1,DCAF13,MCM6,THYN1,MRPS18C,LIAS,SLC25A17,CNBP,GTF2A2,PSTPIP2,ELK4,TIGD1,CDC26,DNA2,CWC25,TTC32,TAX1BP1,FAM78A,ZW10,C1QA,ZNF18,EIF2D,TMA7,TEX10,ABI3,ITGAE,APPBP2,CYP2R1,PPHLN1,KIFC1,C1D,RBM48,UBE2D3,TBXAS1,RBM5,NKTR,CUL2,NMRK1,PACC1,SLAMF6,C17orf80,TRA2B,KLHL7,PIAS2,CRIPT,MRPS14,HSPB11,TTC33,CCDC112,PRPF4B,NFKBIE,SNRPB2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ACSL5,MOGS,HLA-DRA,GTSE1,SMARCA5,PGS1,DTX3L,COX16,LIPT2,ASF1A,TIFA,CD8A,FAM110A,COX18,RNF219,TBC1D10C,HLA-DQA1,HEMK1,TNFAIP8L2,HAUS6,UBA7,BRD7,ATF1,PARP2,ZFR,PDCD6,CENPM,FUBP1,TMEM19,CCNB2,ATG4C,SNAPC1,C16orf54,SLC30A7,SNX4,CALCOCO2,MED4,HERC4,RGS18,DLGAP5,CNBP,TRMT10C,TMIGD3,FAM208A,NDUFB5,EXD2,C2CD5,FAM96A,IL21R,KLHL8,TMEM44,PIGK,PPCDC,PRKD3,SPICE1,PRMT9,SLC38A9,RPA2,MOB1B,CDK13,LAIR1,VAV1,MED21,DNAJC8,CFLAR,FAM192A,SRPK2,AMZ2,CARD8,ERCC3,PLCB2,C16orf91,ERI2,BTN2A2,AP4B1,MCM6,ALG5,NSL1,ZNF18,CCSAP,KIZ,TNFSF10,REST,CENPL,CCDC18,CD3E,PRKRA,METTL6,EIF2D,FAM173B,CXCL10,IGFLR1,AK6,CDK2,NCK1,CCZ1,NCAPH,MBLAC2,LYSMD1,MBNL1,FAM208B,NMNAT3,FAM185A,GPANK1,ARHGAP9,ATP2C1,COA1,KIAA1551,TATDN3,FAM133B,MINA,SLC4A7,DPEP2,MFN1,DBR1,LSM2,PIK3R4,DAD1,FAM122B,C17orf75,IFT74,ATR,ABHD12,MPHOSPH9,TLK1,SIT1,GBP4,PDCL,C2orf68,WSB1,ANGEL2,SCNM1,UBA2,CEPT1,MTIF2,SLC29A3,LXN,NME7,SLC35A3,PAN3,CMC2,C1orf131,ARL5A,PRIM1,UBE2D3,MDM4,CASP10,RTN3,TK1,UNG,CCDC174,KDM5A,C20orf196,WDR60,HAUS5,SNUPN,ALPK1,RNF213,GORAB,CHRAC1,CIITA,TOMM5,EPC1,TRMU,C7orf49,RABL3,MSL2,MFSD11,LACTB,VAMP5,ALG14,MOB1A,SCLT1,HAVCR2,GPR65,KLHL7,C1QA,UBE2V2,EVL,RSPRY1,PIK3C3,SH2D2A,ZC3H6,CXorf21,LCORL,HERPUD1,C2orf42,RCSD1,BANF1,NFYB,RARRES1,GIMAP6,ABHD18,SRSF2,ELAC1,UBE2T,RAD17,C14orf142,PARP9,FANCG,GABARAP,RWDD2B,MFSD8,NR2C2AP,CCNL1,S100PBP,SENP5,CCNY,TMEM50B,RB1,DRAM2,GFM1,SAR1A,HLA-DOB,SGSM3,RUNX3,DNAAF2,FAM220A,OSGEPL1,USP39,HAUS1,SLC33A1,FAM204A,ORC2,ZNF3,ITCH,C16orf87,GTF2A2,OXLD1,RSBN1L,GNG10,CCDC109B,SENP2,FBXO33,TIA1,CCNH,CEP290,PUS7,PREX1,ING4,CD180,MYNN,PMS2,CWC25,RAB10,IFNAR2,MPLKIP,ZUFSP,VDAC3,GPR160,HBS1L,PTPN12,TRMO,RNASEH2B,KIAA0907,DNASE2,GBP1,FAIM,NDUFA5,NEK2,GIT2,CENPA,PHTF1,TAGAP,OSBPL11,NUPL2,LCP2,TMX3,CMPK1,NAA20,MRPL47,MED28,FAM175B,ADSL,SLA2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ATP5F1D,EPN1,DOCK6,ZBTB4,CLPTM1,BAIAP2,DMWD,PGAP6,BCAR1,MNT,ARHGDIA,GPI,RARA,SCAP,ENDOG | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000239213 | ENST00000470236 | exon_skip_75398 | chr11:72692752-72692785 | -11.47 | -0.3955 | ARAP1 | ENST00000393605 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000239213 | ENST00000470236 | exon_skip_462160 | chr6:127316449-127316502 | -6.91 | -1.3820 | ECHDC1 | ENST00000531967 | Frame-shift | | ENSG00000239213 | ENST00000470236 | exon_skip_143275 | chr16:24939363-24939597 | -30.61 | -0.2337 | ARHGAP17 | ENST00000289968 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000239213 | ENSG00000041802 | LSG1 | ACC,BLCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,LIHC,PAAD,SKCM,STAD,THCA,UCEC,UCS | CESC | | | ENSG00000239213 | ENSG00000071794 | HLTF | ACC,BLCA,CESC,CHOL,ESCA,HNSC,KICH,LAML,LIHC,LUAD,LUSC,MESO,SKCM,THCA,UCEC,UCS | CESC,HNSC,LUSC | | | ENSG00000239213 | ENSG00000073111 | MCM2 | ACC,BLCA,BRCA,CESC,CHOL,HNSC,KICH,LIHC,PAAD,PRAD,STAD,THYM,UCS | CESC,HNSC | | | ENSG00000239213 | ENSG00000075711 | DLG1 | ACC,CESC,CHOL,COAD,ESCA,HNSC,KICH,LAML,LIHC,LUSC,PAAD,READ,SKCM,UCEC,UCS | CESC,LUSC | | | ENSG00000239213 | ENSG00000080822 | CLDND1 | ACC,CESC,CHOL,COAD,ESCA,HNSC,KIRC,KIRP,LIHC,LUAD,LUSC,READ,SKCM,UCS | LUSC | | | ENSG00000239213 | ENSG00000092470 | WDR76 | ACC,CHOL,HNSC,KIRC,LIHC,THYM | HNSC | | | ENSG00000239213 | ENSG00000113838 | TBCCD1 | ACC,BLCA,BRCA,CESC,COAD,ESCA,HNSC,KICH,LIHC,LUAD,READ,SKCM,STAD,THCA,UCEC,UCS | CESC | | | ENSG00000239213 | ENSG00000114209 | PDCD10 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,HNSC,KICH,LIHC,LUAD,LUSC,MESO,OV,PAAD,PRAD,READ,SKCM,UCEC | CESC,LUSC | | | ENSG00000239213 | ENSG00000114573 | ATP6V1A | ACC,BLCA,CESC,CHOL,COAD,LIHC,LUAD,MESO,READ,SKCM,TGCT,UCS | CESC | | | ENSG00000239213 | ENSG00000136521 | NDUFB5 | ACC,BLCA,CESC,COAD,DLBC,ESCA,GBM,HNSC,KICH,LIHC,LUAD,LUSC,MESO,OV,PRAD,READ,SKCM,THCA,UCEC | LUSC | | | ENSG00000239213 | ENSG00000145191 | EIF2B5 | ACC,CESC,CHOL,ESCA,HNSC,KICH,LIHC,PAAD,THCA | CESC | | | ENSG00000239213 | ENSG00000152952 | PLOD2 | ACC,KICH,LIHC,LUAD,LUSC | LUSC | | | ENSG00000239213 | ENSG00000163607 | GTPBP8 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,HNSC,KICH,LIHC,LUAD,LUSC,MESO,OV,READ,SKCM,UCEC | LUSC | | | ENSG00000239213 | ENSG00000163918 | RFC4 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,LIHC,LUAD,LUSC,PAAD,READ,SKCM,STAD,THYM,UCEC,UCS | CESC,HNSC,LUSC | | | ENSG00000239213 | ENSG00000163923 | RPL39L | ACC,BRCA,CHOL,DLBC,ESCA,HNSC,LUAD,LUSC,PAAD,UCEC,UCS | HNSC,LUSC | | | ENSG00000239213 | ENSG00000174013 | FBXO45 | ACC,BRCA,CESC,CHOL,COAD,KICH,LIHC,PAAD,READ,SKCM,UCEC | CESC | | | ENSG00000239213 | ENSG00000174891 | RSRC1 | ACC,BLCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,LIHC,LUAD,LUSC,READ,SKCM,STAD,UCEC | CESC,LUSC | | | ENSG00000239213 | ENSG00000175792 | RUVBL1 | ACC,BLCA,BRCA,CESC,CHOL,HNSC,KICH,LIHC,LUSC,PAAD,STAD,THCA,THYM,UCEC | CESC,LUSC | | | ENSG00000239213 | ENSG00000183624 | HMCES | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,LAML,LIHC,LUSC,PAAD,PRAD,STAD,TGCT,UCEC | CESC | | | ENSG00000239213 | ENSG00000185798 | WDR53 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,HNSC,KICH,LAML,LIHC,LUAD,LUSC,MESO,PAAD,READ,SKCM,STAD,THCA,THYM,UCEC,UCS | CESC,LUSC | | | ENSG00000239213 | ENSG00000051341 | POLQ | BLCA,CESC,COAD,HNSC,STAD,THYM,UCEC | CESC,HNSC | | | ENSG00000239213 | ENSG00000085760 | MTIF2 | BLCA,BRCA,CHOL,COAD,HNSC,LIHC,LUSC,READ,SKCM,THCA,UCEC | LUSC | | | ENSG00000239213 | ENSG00000104147 | OIP5 | BLCA,BRCA,CHOL,HNSC,LIHC,PAAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000111602 | TIMELESS | BLCA,CHOL,HNSC,KICH,LIHC,THYM | HNSC | | | ENSG00000239213 | ENSG00000117650 | NEK2 | BLCA,BRCA,CHOL,HNSC,LIHC,LUSC,PAAD,THYM | HNSC,LUSC | | | ENSG00000239213 | ENSG00000121579 | NAA50 | BLCA,BRCA,CESC,CHOL,COAD,HNSC,KICH,LIHC,LUAD,LUSC,PAAD,READ,SKCM,UCEC,UCS | CESC,LUSC | | | ENSG00000239213 | ENSG00000149636 | DSN1 | BLCA,BRCA,CHOL,HNSC,LIHC,LUSC,READ,SKCM,STAD,THYM,UCEC | HNSC,LUSC | | | ENSG00000239213 | ENSG00000154920 | EME1 | BLCA,HNSC,LUSC,STAD,THYM,UCEC | HNSC,LUSC | | | ENSG00000239213 | ENSG00000160124 | MIX23 | BLCA,BRCA,CESC,CHOL,COAD,GBM,HNSC,LAML,LIHC,LUAD,LUSC,OV,PAAD,READ,SKCM,STAD,UCEC | CESC,LUSC | | | ENSG00000239213 | ENSG00000163507 | CIP2A | BLCA,BRCA,CHOL,COAD,HNSC,KIRC,LUAD,LUSC,PAAD,SKCM,STAD,THYM,UCEC | HNSC,LUSC | | | ENSG00000239213 | ENSG00000166881 | NEMP1 | BLCA,CHOL,COAD,HNSC,KICH,KIRC,LAML,LIHC,PAAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000167900 | TK1 | BLCA,CHOL,ESCA,HNSC,LIHC,LUSC,PAAD,STAD,THYM | HNSC,LUSC | | | ENSG00000239213 | ENSG00000172244 | C5orf34 | BLCA,BRCA,COAD,HNSC,LUAD,THYM,UCEC | HNSC | | | ENSG00000239213 | ENSG00000173226 | IQCB1 | BLCA,BRCA,CESC,CHOL,COAD,HNSC,KICH,KIRC,KIRP,LAML,LIHC,LUAD,LUSC,PAAD,READ,SKCM,STAD,UCEC | LUSC | | | ENSG00000239213 | ENSG00000175054 | ATR | BLCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,KIRC,LAML,LIHC,LUAD,LUSC,MESO,PAAD,PRAD,READ,SKCM,STAD,TGCT,THCA,UCEC,UCS | CESC | | | ENSG00000239213 | ENSG00000181788 | SIAH2 | BLCA,CHOL,ESCA,HNSC,KIRP,LUAD,LUSC,PAAD,THYM | LUSC | | | ENSG00000239213 | ENSG00000183814 | LIN9 | BLCA,BRCA,CHOL,COAD,HNSC,LAML,LUAD,LUSC,READ,THYM,UCEC | LUSC | | | ENSG00000239213 | ENSG00000051180 | RAD51 | BRCA,CHOL,HNSC,LIHC,PAAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000070087 | PFN2 | BRCA,DLBC,ESCA,KICH,LIHC,LUAD,LUSC,THCA | LUSC | | | ENSG00000239213 | ENSG00000075218 | GTSE1 | BRCA,CHOL,HNSC,LIHC,STAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000077152 | UBE2T | BRCA,CESC,CHOL,HNSC,KICH,LIHC,LUSC,PAAD,THYM | CESC,HNSC,LUSC | | | ENSG00000239213 | ENSG00000093009 | CDC45 | BRCA,CHOL,HNSC,LIHC,LUSC,STAD,THYM | HNSC,LUSC | | | ENSG00000239213 | ENSG00000099256 | PRTFDC1 | BRCA,HNSC,KICH,LIHC,THCA | HNSC | | | ENSG00000239213 | ENSG00000100410 | PHF5A | BRCA,CHOL,ESCA,GBM,HNSC,KICH,LIHC,LUAD,LUSC,OV,PAAD,STAD,THCA,THYM | LUSC | | | ENSG00000239213 | ENSG00000105011 | ASF1B | BRCA,CHOL,HNSC,KICH,LIHC,THYM | HNSC | | | ENSG00000239213 | ENSG00000119878 | CRIPT | BRCA,CHOL,COAD,ESCA,GBM,HNSC,KIRP,LAML,LIHC,LUAD,LUSC,MESO,READ,SKCM,THYM,UCEC | LUSC | | | ENSG00000239213 | ENSG00000120334 | CENPL | BRCA,CHOL,COAD,ESCA,HNSC,LUAD,LUSC,READ,THYM,UCEC | HNSC,LUSC | | | ENSG00000239213 | ENSG00000123485 | HJURP | BRCA,CHOL,HNSC,LIHC,PAAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000131351 | HAUS8 | BRCA,CHOL,ESCA,HNSC,STAD,THYM,UCEC | HNSC | | | ENSG00000239213 | ENSG00000136982 | DSCC1 | BRCA,CHOL,HNSC,LIHC,PAAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000138346 | DNA2 | BRCA,CHOL,COAD,HNSC,STAD,THYM,UCEC | HNSC | | | ENSG00000239213 | ENSG00000156787 | TBC1D31 | BRCA,COAD,HNSC,LAML,READ,THYM,UCEC | HNSC | | | ENSG00000239213 | ENSG00000163170 | BOLA3 | BRCA,CHOL,ESCA,GBM,HNSC,LIHC,LUAD,LUSC,MESO,THCA | LUSC | | | ENSG00000239213 | ENSG00000164032 | H2AZ1 | BRCA,CESC,CHOL,HNSC,KICH,LIHC,LUSC,THYM | CESC,LUSC | | | ENSG00000239213 | ENSG00000166451 | CENPN | BRCA,ESCA,LIHC,LUSC,THYM | LUSC | | | ENSG00000239213 | ENSG00000166508 | MCM7 | BRCA,CHOL,HNSC,KICH,LIHC,THYM | HNSC | | | ENSG00000239213 | ENSG00000168496 | FEN1 | BRCA,CHOL,HNSC,KICH,LIHC,THYM | HNSC | | | ENSG00000239213 | ENSG00000172167 | MTBP | BRCA,COAD,HNSC,LAML,READ | HNSC | | | ENSG00000239213 | ENSG00000175455 | CCDC14 | BRCA,CHOL,COAD,HNSC,KICH,KIRC,LIHC,READ,SKCM,THYM,UCS | HNSC | | | ENSG00000239213 | ENSG00000183765 | CHEK2 | BRCA,CHOL,HNSC,LUSC,PAAD,PRAD,STAD,UCEC | LUSC | | | ENSG00000239213 | ENSG00000184445 | KNTC1 | BRCA,CHOL,COAD,HNSC,KIRC,LAML,LIHC,LUAD,PAAD,STAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000213186 | TRIM59 | BRCA,CESC,COAD,ESCA,HNSC,LUAD,LUSC,READ,THYM | CESC,HNSC,LUSC | | | ENSG00000239213 | ENSG00000237649 | KIFC1 | BRCA,CHOL,HNSC,LIHC,STAD,THYM | HNSC | | | ENSG00000239213 | ENSG00000250565 | ATP6V1E2 | BRCA,CHOL,COAD,KIRP,LUSC,READ,THCA,UCEC | LUSC | | | ENSG00000239213 | ENSG00000076248 | UNG | CESC,CHOL,ESCA,HNSC,LIHC,PAAD,THCA | CESC | | | ENSG00000239213 | ENSG00000080819 | CPOX | CESC,ESCA,HNSC,KIRP,LUSC,PRAD,READ,SKCM,THCA,THYM,UCEC,UCS | CESC,LUSC | | | ENSG00000239213 | ENSG00000083093 | PALB2 | CESC,CHOL,COAD,KICH,KIRC,LAML,LIHC,LUAD,PAAD,READ,UCEC | CESC | | | ENSG00000239213 | ENSG00000114023 | FAM162A | CESC,HNSC,KICH,LUSC,OV,READ | LUSC | | | ENSG00000239213 | ENSG00000123080 | CDKN2C | CESC,DLBC,ESCA,HNSC,KICH,LIHC,THYM | CESC | | | ENSG00000239213 | ENSG00000145088 | EAF2 | CESC,GBM,HNSC,LUAD,LUSC,MESO,OV,READ,SARC,SKCM,TGCT,THCA | CESC | | | ENSG00000239213 | ENSG00000163041 | H3-3A | CESC,CHOL,COAD,HNSC,KICH,LAML,LUAD,LUSC,READ,THYM,UCEC | CESC | | | ENSG00000239213 | ENSG00000163611 | SPICE1 | CESC,CHOL,COAD,HNSC,KICH,KIRC,LAML,LUAD,READ,SKCM,UCEC,UCS | CESC | | | ENSG00000239213 | ENSG00000164104 | HMGB2 | CESC,CHOL,HNSC,KICH,LIHC,READ,SKCM,STAD,THYM | CESC | | | ENSG00000239213 | ENSG00000189366 | ALG1L | CESC,ESCA,HNSC,LUSC,UCS | CESC,HNSC,LUSC | | | ENSG00000239213 | ENSG00000100216 | TOMM22 | CHOL,GBM,HNSC,LIHC,LUSC,READ | LUSC | | | ENSG00000239213 | ENSG00000116161 | CACYBP | CHOL,COAD,HNSC,LIHC,LUAD,LUSC,READ | LUSC | | | ENSG00000239213 | ENSG00000122952 | ZWINT | CHOL,HNSC,KICH,LIHC,THYM,UCS | HNSC | | | ENSG00000239213 | ENSG00000123219 | CENPK | CHOL,COAD,HNSC,LUAD,SKCM,THYM | HNSC | | | ENSG00000239213 | ENSG00000131944 | FAAP24 | CHOL,LIHC,LUSC,STAD,THYM | LUSC | | | ENSG00000239213 | ENSG00000143633 | C1orf131 | CHOL,COAD,HNSC,KICH,KIRC,LIHC,LUAD,LUSC,READ,STAD,THCA,THYM | LUSC | | | ENSG00000239213 | ENSG00000168393 | DTYMK | CHOL,GBM,HNSC,LIHC,LUSC | LUSC | | | ENSG00000239213 | ENSG00000184162 | NR2C2AP | CHOL,ESCA,HNSC,LIHC,LUSC | LUSC | | | ENSG00000239213 | ENSG00000151881 | TMEM267 | COAD,GBM,KICH,LUAD,LUSC,READ,SKCM,THCA,UCEC | LUSC | | | ENSG00000239213 | ENSG00000170417 | TMEM182 | COAD,ESCA,GBM,KICH,KIRP,LAML,LUAD,LUSC,READ,SKCM | LUSC | | | ENSG00000239213 | ENSG00000169241 | SLC50A1 | DLBC,GBM,HNSC,KICH,LGG,LIHC,LUSC,OV | LUSC | | | ENSG00000239213 | ENSG00000089820 | ARHGAP4 | GBM,HNSC,KIRC,KIRP,LGG,LIHC,MESO,SARC,THYM | HNSC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000153147 | SMARCA5 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000153147 | SMARCA5 | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000153147 | SMARCA5 | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000111875 | ASF1A | 5 | COAD,KICH,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000123268 | ATF1 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000123268 | ATF1 | 6 | COAD,KICH,LAML,LIHC,READ,UCEC | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000162613 | FUBP1 | 6 | COAD,KICH,LAML,LIHC,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000162613 | FUBP1 | 5 | COAD,KICH,LAML,LIHC,SKCM | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000162613 | FUBP1 | 5 | CHOL,COAD,KICH,KIRC,LIHC | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000125703 | ATG4C | 5 | COAD,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000125703 | ATG4C | 6 | COAD,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000125703 | ATG4C | 5 | CHOL,COAD,KIRC,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000162695 | SLC30A7 | 5 | COAD,KICH,LAML,READ,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000114520 | SNX4 | 8 | BLCA,CESC,COAD,HNSC,KICH,LUSC,READ,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000169714 | CNBP | 8 | BLCA,CESC,HNSC,KICH,LIHC,LUSC,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000163946 | TASOR | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000163946 | TASOR | 7 | COAD,KICH,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000163946 | TASOR | 5 | COAD,KICH,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000163946 | TASOR | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000163946 | TASOR | 6 | CHOL,COAD,KICH,KIRC,LIHC,READ | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000142892 | PIGK | 5 | COAD,KICH,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000142892 | PIGK | 6 | COAD,KICH,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000163611 | SPICE1 | 6 | COAD,KICH,LAML,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000163611 | SPICE1 | 7 | CESC,COAD,HNSC,KICH,LAML,READ,SKCM | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000163611 | SPICE1 | 5 | CHOL,COAD,KICH,KIRC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000152944 | MED21 | 5 | KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000135250 | SRPK2 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000196678 | ERI2 | 5 | COAD,KICH,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000196678 | ERI2 | 5 | CHOL,COAD,KICH,KIRC,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000084093 | REST | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000206562 | METTL6 | 6 | COAD,KICH,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000206562 | METTL6 | 7 | COAD,KICH,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000206562 | METTL6 | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000206562 | METTL6 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000206562 | METTL6 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000150756 | ATPSCKMT | 5 | COAD,KICH,LIHC,READ,UCEC | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000158092 | NCK1 | 6 | COAD,KICH,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000158092 | NCK1 | 6 | COAD,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000158092 | NCK1 | 8 | CESC,HNSC,KICH,LAML,LIHC,LUSC,SKCM,THYM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000158092 | NCK1 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000152601 | MBNL1 | 5 | CESC,COAD,KICH,LIHC,THYM | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000108021 | TASOR2 | 5 | COAD,KICH,LAML,LIHC,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000108021 | TASOR2 | 5 | COAD,KICH,LAML,LIHC,SKCM | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000108021 | TASOR2 | 5 | CHOL,COAD,KICH,KIRC,LIHC | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000017260 | ATP2C1 | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000106603 | COA1 | 6 | COAD,KICH,LAML,LIHC,SKCM,UCEC | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000234545 | FAM133B | 5 | COAD,KICH,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000234545 | FAM133B | 5 | CHOL,COAD,KICH,KIRC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000170854 | RIOX2 | 5 | COAD,KICH,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000171109 | MFN1 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000171109 | MFN1 | 7 | COAD,KICH,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000171109 | MFN1 | 7 | BLCA,COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000171109 | MFN1 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000138231 | DBR1 | 7 | BLCA,CESC,HNSC,KICH,LIHC,LUSC,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000196455 | PIK3R4 | 6 | BLCA,CESC,COAD,HNSC,KICH,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000108666 | C17orf75 | 7 | HNSC,KICH,LAML,LIHC,LUSC,SKCM,THYM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000096872 | IFT74 | 6 | COAD,KICH,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000096872 | IFT74 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000175054 | ATR | 5 | COAD,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000175054 | ATR | 7 | COAD,KICH,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000175054 | ATR | 10 | BLCA,CESC,COAD,HNSC,KICH,LAML,LIHC,LUSC,READ,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000175054 | ATR | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000143156 | NME7 | 5 | CHOL,COAD,KIRC,LIHC,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000117620 | SLC35A3 | 5 | COAD,KICH,LAML,SKCM,THYM | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000162980 | ARL5A | 5 | COAD,KICH,LAML,READ,SKCM | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000073331 | ALPK1 | 5 | CHOL,COAD,KICH,KIRC,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000120616 | EPC1 | 5 | COAD,LAML,LIHC,SKCM,THYM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000144840 | RABL3 | 5 | COAD,KICH,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000144840 | RABL3 | 7 | CESC,COAD,HNSC,KICH,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000174579 | MSL2 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000174579 | MSL2 | 7 | COAD,KICH,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000174579 | MSL2 | 11 | BLCA,CESC,COAD,HNSC,KICH,LAML,LIHC,LUSC,READ,SKCM,THYM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000174579 | MSL2 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000174579 | MSL2 | 6 | CHOL,COAD,KICH,KIRC,LIHC,READ | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000122550 | KLHL7 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000122550 | KLHL7 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000159579 | RSPRY1 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000178177 | LCORL | 5 | COAD,KICH,LAML,READ,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000120837 | NFYB | 5 | COAD,HNSC,LAML,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000152942 | RAD17 | 6 | COAD,KICH,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000152942 | RAD17 | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000152942 | RAD17 | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000152942 | RAD17 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000152942 | RAD17 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000164073 | MFSD8 | 6 | COAD,KICH,LAML,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000163660 | CCNL1 | 5 | COAD,HNSC,READ,SKCM,THYM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000116497 | S100PBP | 5 | COAD,HNSC,KICH,LAML,LIHC | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000116497 | S100PBP | 5 | CHOL,COAD,KICH,KIRC,LIHC | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000119231 | SENP5 | 5 | COAD,LAML,LIHC,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000119231 | SENP5 | 8 | BLCA,CESC,COAD,HNSC,LIHC,LUSC,SKCM,THYM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000142188 | TMEM50B | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000168827 | GFM1 | 6 | COAD,KICH,LAML,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000168827 | GFM1 | 8 | BLCA,CESC,COAD,HNSC,KICH,LUSC,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000128694 | OSGEPL1 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000128694 | OSGEPL1 | 5 | COAD,LAML,LIHC,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000128694 | OSGEPL1 | 6 | COAD,HNSC,KICH,LAML,LIHC,SKCM | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000128694 | OSGEPL1 | 5 | CHOL,COAD,KICH,KIRC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000169359 | SLC33A1 | 5 | COAD,KICH,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000169359 | SLC33A1 | 8 | BLCA,CESC,COAD,HNSC,KICH,LUSC,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000165669 | FAM204A | 5 | COAD,KICH,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000115942 | ORC2 | 5 | COAD,LAML,LIHC,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000115942 | ORC2 | 6 | COAD,HNSC,LAML,LIHC,SKCM,THYM | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000078747 | ITCH | 5 | KICH,LAML,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000187257 | RSBN1L | 6 | COAD,KICH,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000187257 | RSBN1L | 6 | COAD,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000187257 | RSBN1L | 7 | COAD,HNSC,KICH,LAML,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000187257 | RSBN1L | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000187257 | RSBN1L | 6 | CHOL,COAD,KICH,KIRC,LIHC,READ | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000163904 | SENP2 | 5 | COAD,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000163904 | SENP2 | 7 | BLCA,CESC,COAD,HNSC,LIHC,READ,SKCM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000116001 | TIA1 | 5 | COAD,KICH,LAML,LIHC,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000116001 | TIA1 | 7 | COAD,HNSC,KICH,LAML,LIHC,READ,THYM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000116001 | TIA1 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000184939 | ZFP90 | ENSG00000116001 | TIA1 | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000111653 | ING4 | 5 | HNSC,KICH,LAML,LIHC,THYM | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000085274 | MYNN | 6 | COAD,KICH,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000085274 | MYNN | 7 | COAD,KICH,LAML,LIHC,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000085274 | MYNN | 7 | BLCA,COAD,HNSC,KICH,LAML,LIHC,SKCM | | ENSG00000239213 | ENSG00000126804 | ZBTB1 | ENSG00000085274 | MYNN | 5 | CHOL,COAD,KICH,LIHC,READ | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000122512 | PMS2 | 5 | COAD,LAML,LIHC,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000122512 | PMS2 | 5 | COAD,LAML,LIHC,READ,UCEC | | ENSG00000239213 | ENSG00000114126 | TFDP2 | ENSG00000153975 | ZUP1 | 5 | COAD,KICH,LIHC,SKCM,THYM | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000112339 | HBS1L | 5 | COAD,KICH,READ,SKCM,UCEC | | ENSG00000239213 | ENSG00000036549 | ZZZ3 | ENSG00000165660 | ABRAXAS2 | 5 | COAD,KICH,LAML,READ,THCA | | ENSG00000239213 | ENSG00000084093 | REST | ENSG00000165660 | ABRAXAS2 | 5 | COAD,KICH,LAML,READ,SKCM |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000239213.4 | ENST00000461864.4 | 123 | 1048 | 1419 | | ENSG00000239213.4 | ENST00000474250.4 | 116 | 503 | 153 | | ENSG00000239213.4 | ENST00000470236.1 | 79 | 601 | 362 |
|
