Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000238058

Summary for RP11-432J22.2

Gene summary

Gene information	Ensembl ID	ENSG00000238058
	Gene symbol	RP11-432J22.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP11-432J22.2

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000238058	3.261593e+01	-1.363711e+00	3.160486e-01	-4.314877e+00	1.600000e-05	9.710000e-05	DOWN	GBM
ENSG00000238058	1.666965e+01	1.313143e+00	3.470868e-01	3.783328e+00	1.547450e-04	6.503880e-04	UP	CHOL
ENSG00000238058	4.152214e+01	1.211250e+00	1.283933e-01	9.433903e+00	3.950000e-21	2.730000e-20	UP	LUSC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000238058	3.160714e-01	5.105142e-03	ACC	1.612150e-02
ENSG00000238058	4.939734e-01	5.636149e-04	CHOL	1.094552e-03
ENSG00000238058	-3.409382e-01	1.077461e-03	KICH	1.464475e-03

Top

lncRNA-Protein interaction for RP11-432J22.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000102908	NFAT5	16.39	90.3263	O94916	TF	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000130254	SAFB2	13.79	90.1309	Q14151	TF,RBP	ENCODE
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000100207	TCF20	13.5	92.8137	Q9UGU0	TF	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000116731	PRDM2	12.33	92.039	Q13029	TF,Epi	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000168769	TET2	10.96	91.4975	Q6N021	TF,Epi	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000084093	REST	9.97	93.7701	Q13127	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000159082	SYNJ1	14.43	91.424	O43426	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000004534	RBM6	14.02	91.3067	P78332	RBP	High-throughput data
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000122965	RBM19	13.81	91.3214	Q9Y4C8	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000130254	SAFB2	13.79	91.3416	Q14151	TF,RBP	ENCODE
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000198000	NOL8	12.78	91.4341	Q76FK4	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000137776	SLTM	11.73	92.1632	Q9NWH9	RBP	ENCODE
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000012048	BRCA1	11.58	94.4422	P38398	RBP,Epi	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000116350	SRSF4	11.3	90.0271	Q08170	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000139746	RBM26	10.95	92.2294	Q5T8P6	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000078269	SYNJ2	10.04	90.5336	O15056	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000244462	RBM12	8.98	91.3483	Q9NTZ6	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000133226	SRRM1	8.35	92.6805	Q8IYB3	RBP	NA
ENSG00000238058	ENST00000423793	RP11-432J22.2	ENSG00000167978	SRRM2	4.12	95.6649	Q9UQ35	RBP	NA

Top

lncRNA-DNA interaction for RP11-432J22.2

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP11-432J22.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NUPR1,ETHE1,TIMM13,NDUFB7,RGS10,ACADS,NDUFB9,MYDGF,MGST2,ISOC2,DHRS4L2,COPE,CD63

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000238058	ENST00000423793	exon_skip_62840	chr11:70421469-70421580	-14.05	-0.1653	CTTN	ENST00000301843	In-frame
ENSG00000238058	ENST00000423793	exon_skip_326009	chr2:64581189-64581273	-9.53	-0.1798	AFTPH	ENST00000238855,ENST00000409933	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000238058	ENST00000423793	exon_skip_370518	chr22:50247691-50247776	-10.38	-0.1702	HDAC10	ENST00000216271	Frame-shift
ENSG00000238058	ENST00000423793	exon_skip_6419	chr1:51756319-51756358	-7.22	-0.1851	OSBPL9	ENST00000428468	In-frame
ENSG00000238058	ENST00000423793	exon_skip_386313	chr3:108051938-108051970	-3.59	-0.3590	CD47	ENST00000361309	Frame-shift
ENSG00000238058	ENST00000423793	exon_skip_111863	chr14:23565815-23565892	-12.97	-0.1995	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000238058	ENST00000423793	exon_skip_382458	chr3:38131595-38131638	-8.41	-0.3115	ACAA1	ENST00000333167	Frame-shift
ENSG00000238058	ENST00000423793	exon_skip_66185	chr11:124626472-124626609	-14.07	-0.1050	TBRG1	ENST00000441174	Frame-shift
ENSG00000238058	ENST00000423793	exon_skip_114365	chr14:74290026-74290118	-12.55	-0.2728	ABCD4	ENST00000356924	Frame-shift
ENSG00000238058	ENST00000423793	exon_skip_436498	chr5:96729152-96729209	-6.37	-0.7963	CAST	ENST00000341926,ENST00000395813	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000238058	hsa-mir-22	ENST00000423793	chr9:135907964-135908052	184.00	-78.75	86	NA
ENSG00000238058	hsa-mir-22	ENST00000423793	chr9:135907813-135907888	158.00	-78.41	72	NA

Top

Variants for RP11-432J22.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_228182	ENSG00000238058.1	chr9	135909602	+	antisense	RP11-432J22.2	ENST00000423793.1	antisense	RP11-432J22.2-001
LncEditing_228201	ENSG00000238058.1	chr9	135909926	+	antisense	RP11-432J22.2	ENST00000423793.1	antisense	RP11-432J22.2-001
LncEditing_228230	ENSG00000238058.1	chr9	135912525	+	antisense	RP11-432J22.2	ENST00000423793.1	antisense	RP11-432J22.2-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000238058	LncEditing_228182	UCS	chr9_135909602_+	5.174491e+00	2.442688e+00	9.234062e-01	3.002613e+00	2.676724e-03	4.757210e-03	UP
ENSG00000238058	LncEditing_228201	UCS	chr9_135909926_+	4.595491e+00	2.219981e+00	9.526789e-01	4.031785e+00	5.535483e-05	2.900565e-04	UP
ENSG00000238058	LncEditing_228230	OV	chr9_135912525_+	5.584250e+00	3.237556e+00	1.271523e+00	6.256439e+00	3.938673e-10	6.807538e-10	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000238058	ENST00000423793	NUPR1	ENSG00000176046	ENST00000324873	-0.1024	1	GBM	CHOL
ENSG00000238058	ENST00000423793	NUPR1	ENSG00000176046	ENST00000567646	-0.1136	1	GBM	CHOL
ENSG00000238058	ENST00000423793	ISOC2	ENSG00000063241	ENST00000438389	-0.1078	1	-	CHOL
ENSG00000238058	ENST00000423793	ISOC2	ENSG00000063241	ENST00000425675	-0.1078	1	-	CHOL
ENSG00000238058	ENST00000423793	ISOC2	ENSG00000063241	ENST00000085068	-0.1078	1	-	CHOL
ENSG00000238058	ENST00000423793	MGST2	ENSG00000085871	ENST00000265498	-0.1042	55	GBM	CHOL
ENSG00000238058	ENST00000423793	MGST2	ENSG00000085871	ENST00000503816	-0.1005	1	GBM	CHOL
ENSG00000238058	ENST00000423793	ACADS	ENSG00000122971	ENST00000242592	-0.1062	1	-	CHOL
ENSG00000238058	ENST00000423793	ACADS	ENSG00000122971	ENST00000411593	-0.2036	102	-	CHOL
ENSG00000238058	ENST00000423793	DHRS4L2	ENSG00000187630	ENST00000621761	-0.1028	1	GBM	CHOL
ENSG00000238058	ENST00000423793	DHRS4L2	ENSG00000187630	ENST00000397071	-0.1028	1	GBM	CHOL
ENSG00000238058	ENST00000423793	DHRS4L2	ENSG00000187630	ENST00000558753	-0.3847	50	GBM	CHOL
ENSG00000238058	ENST00000423793	DHRS4L2	ENSG00000187630	ENST00000382755	-0.1028	1	GBM	CHOL
ENSG00000238058	ENST00000423793	DHRS4L2	ENSG00000187630	ENST00000560276	-0.1997	116	GBM	CHOL
ENSG00000238058	ENST00000423793	ETHE1	ENSG00000105755	ENST00000292147	-0.1059	153	GBM	-
ENSG00000238058	ENST00000423793	ETHE1	ENSG00000105755	ENST00000594342	-0.1141	108	GBM	-
ENSG00000238058	ENST00000423793	ETHE1	ENSG00000105755	ENST00000600651	-0.1572	1	GBM	-
ENSG00000238058	ENST00000423793	ETHE1	ENSG00000105755	ENST00000598330	-0.1114	1	GBM	-
ENSG00000238058	ENST00000423793	MYDGF	ENSG00000074842	ENST00000599761	-0.1408	1	GBM	-
ENSG00000238058	ENST00000423793	MYDGF	ENSG00000074842	ENST00000262947	-0.1077	1	GBM	-
ENSG00000238058	ENST00000423793	MYDGF	ENSG00000074842	ENST00000599630	-0.1681	112	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000552067	-0.1134	64	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000548160	-0.1134	86	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000546939	-0.1134	86	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000552692	-0.1134	86	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000549117	-0.2245	98	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000257857	-0.2245	103	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000552754	-0.4440	123	GBM	-
ENSG00000238058	ENST00000423793	CD63	ENSG00000135404	ENST00000550776	-0.5680	153	GBM	-

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000238058	RP11-432J22.2,hsa-mir-22,EPM2AIP1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,WDR33	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RNPC3	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ZHX2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,PHF2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,KAT7	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,COIL	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,TRMT10B	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,USP21	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,YTHDC1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RPRD2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,INO80D	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CHD1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,KANSL1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,NAA16	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,C17orf80	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,MRI1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,TTC14	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RSBN1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ERCC3	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,KMT2E	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RBM4B	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,COA5	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RAD52	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,PCF11	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,EIF2D	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,NAB1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RBM39	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ING5	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CLK2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CLK4	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SYNGAP1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,KHDC4	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,PHF10	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CEP95	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,EIF4ENIF1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,TIA1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,DPF2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,MSL1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RC3H1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,GABBR1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ORC2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RBBP6	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,EDRF1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SUDS3	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,AKAP8	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RBMX	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,PMS1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,UBE2G2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,FBXO46	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,PHF12	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,MSL2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RCOR3	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ZMYM5	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ANGEL2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,GPATCH8	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,MRE11	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RABGAP1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CLASP1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,RBM14	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,MDM4	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,UIMC1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SRRM1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SF3B1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,FNBP4	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,NHLRC2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SRSF1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,DGCR8	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SP1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,POGZ	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CTDSPL2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,BUD13	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ZNF83	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CASC3	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,GGNBP2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ZMYM3	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,N4BP2L2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,PRPF39	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,GPALPP1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SREK1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,DMTF1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ANP32E	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,EZH1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,HEXIM1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,ARID4B	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,SZT2	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,CEP164	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,PAXIP1	KICH,CHOL,DLBC,SARC,KIRP
ENSG00000238058	RP11-432J22.2,hsa-mir-22,KATNBL1	KICH,CHOL,DLBC,SARC,KIRP

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000238058.1	ENST00000423793.1	60	13	195

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential