 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | E2F6,CHEK2,COMMD2,EIF2B5,XXYLT1,CHST14,DNAJC19,TBL1XR1,RPL39L,RYK,WDR53,PARL,ALG1L,CLDND1,YEATS2,C12orf73,NDUFB5,DNAJB11,TARBP2,CEBPZOS,MLF1,BCL7C,DCUN1D1,SLC44A5,TTC30B,WDR72,TMEM41A,NCBP2,UBXN7 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000237978 | ENSG00000114503 | NCBP2 | BLCA,CESC,ESCA,HNSC,LUAD,LUSC,THYM,UCS | LUSC | | | ENSG00000237978 | ENSG00000137968 | SLC44A5 | BLCA,LUAD,OV,THYM,UCS | LUAD | | | ENSG00000237978 | ENSG00000139546 | TARBP2 | BLCA,CESC,ESCA,HNSC,LUAD,UCS | BLCA | | | ENSG00000237978 | ENSG00000145191 | EIF2B5 | BLCA,ESCA,HNSC,LUAD,LUSC,THYM | LUSC | | | ENSG00000237978 | ENSG00000205981 | DNAJC19 | BLCA,CESC,ESCA,HNSC,LUAD,LUSC,OV,THYM,UCEC,UCS | LUSC | | | ENSG00000237978 | ENSG00000043093 | DCUN1D1 | CESC,ESCA,HNSC,LUAD,LUSC,THYM,UCS | LUSC | | | ENSG00000237978 | ENSG00000136521 | NDUFB5 | CESC,ESCA,HNSC,LUAD,LUSC,OV,UCEC | LUSC | | | ENSG00000237978 | ENSG00000163872 | YEATS2 | CESC,ESCA,HNSC,LUSC,THYM | ESCA,HNSC,LUSC | | | ENSG00000237978 | ENSG00000163923 | RPL39L | CESC,ESCA,HNSC,LUAD,LUSC,OV,UCEC | CESC,ESCA,HNSC,LUAD,LUSC,UCEC | | | ENSG00000237978 | ENSG00000189366 | ALG1L | CESC,ESCA,HNSC,LUAD,LUSC,OV,THYM | CESC,ESCA,HNSC,LUAD,LUSC | | | ENSG00000237978 | ENSG00000080822 | CLDND1 | ESCA,HNSC,LUAD,LUSC,THYM | LUSC | | | ENSG00000237978 | ENSG00000090520 | DNAJB11 | ESCA,HNSC,LUAD,LUSC,UCEC,UCS | LUSC,UCEC | | | ENSG00000237978 | ENSG00000163900 | TMEM41A | ESCA,HNSC,LUSC,THYM,UCS | LUSC | | | ENSG00000237978 | ENSG00000163960 | UBXN7 | ESCA,HNSC,LUSC,THYM,UCS | LUSC | | | ENSG00000237978 | ENSG00000173950 | XXYLT1 | ESCA,HNSC,LUAD,LUSC,UCS | LUSC | | | ENSG00000237978 | ENSG00000175193 | PARL | ESCA,HNSC,LUAD,LUSC,OV,UCS | LUSC | | | ENSG00000237978 | ENSG00000177565 | TBL1XR1 | ESCA,HNSC,LUSC,UCEC,UCS | LUSC | | | ENSG00000237978 | ENSG00000183765 | CHEK2 | ESCA,HNSC,LUAD,LUSC,THYM | ESCA,LUAD,LUSC | | | ENSG00000237978 | ENSG00000185798 | WDR53 | ESCA,HNSC,LUAD,LUSC,UCS | ESCA,LUSC | | | ENSG00000237978 | ENSG00000166415 | WDR72 | HNSC,LUAD,LUSC,OV,THYM | LUAD,LUSC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000237978.4 | ENST00000437488.4 | 53 | 68 | 229 | | ENSG00000237978.4 | ENST00000432385.4 | 86 | 332 | 72 | | ENSG00000237978.4 | ENST00000451742.4 | 73 | 218 | 0 | | ENSG00000237978.4 | ENST00000425330.1 | 83 | 320 | 69 | | ENSG00000237978.4 | ENST00000421498.1 | 71 | 6 | 221 |
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