 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | FKBP8,ARL16,UXT,SLIRP,TCEA2,NDUFS3,THAP4,KRT10,ABHD17A,TMEM234,C12orf57,POLD2,PSMB7,PET100,RNF166,SART1,CMC2,WDR83OS,SHARPIN,DPM2,DYNC2I2,QPCTL,TMUB1,PPP2R3B,BCS1L,HINT2,CTU1,ACD,RPS27A,DPP7,XAB2,TIMM17B,B3GAT3,TRAPPC12,MRPS12,NDUFB9,NDUFA11,RCE1,METTL5,NPEPL1,SNRPA,WDR54,DTYMK,TRAPPC2L,HIRIP3,FAAP20,COMMD7,COA3,LAMTOR2,SURF2,EIF2B5,EIF3G,NDUFA3,PPIH,INPP5K,COA4,PAF1,CDK2AP2,COG4,SVBP,SPRN,MICOS13,TAZ,SUGP1,SPG7,NDUFB2,UQCR11,PSMD13,GTF2H5,USE1,CYB5D2,TMEM208,RAB4B,UQCC2,TARBP2,ILKAP,VKORC1,CISD3,DHX34,RING1,PSENEN,SSU72,CHKB,UROD,CBY1,WDR83,OSGEP,USF1,MAD1L1,ITGB3BP,GABPB1,NASP,ANKRD39,DHPS,MPST,BABAM1,ACYP1,MRPS34,SLC25A29,PIH1D1,CTU2,CRELD2,TSSC4,B3GALT6,DDX49,C19orf48,PFDN6,INO80E,RBM42,ATP5MK,C3orf62,CSNK2B,YJU2,NOC4L,RPL35,NDUFA2,BORCS6,CLPP,MIIP,TMEM160,LPAR2,PARL,C18orf21,FDX2,MCAT,ESS2,PSMB3,C1orf52,MTLN,MRPS2,TSEN54,FAM229B,ZNF593,ATG4B,MRPL57,PAFAH1B3,LMNTD2,PFDN5,FAM229A,CCS,CCDC159,HMGN3,CCDC167,NDUFB1,SLC25A28,ARFGAP2,CZIB,RABL6,PDRG1,ELOF1,RPA3,HEXD,SDHAF2,PMVK,ANAPC11,SCNN1D,CCDC24,CCDC12,EIF3K,PTRHD1,CDK5,ERCC5,DDT,MCRIP1,SDF2L1,PCYT2,IQCC,TRIR,MRPL52,SCNM1,PRADC1,RTRAF,TEDC2,GLI4,DNAJC4,MRPL55,EMG1,HMGCL,NMRAL1,NDUFB8,COX6B1,STK11,SNRNP25,CRIP2,PPP1R12C,C1orf159,NDUFS8,DDX56,FAM98C,PPOX,SWI5,NDUFB11,MALSU1,ATP6V0B,C19orf53,MRPL20,TMEM18,GUK1,EIF2B4,MRPL28,C20orf96,HSCB,ARFGAP1,MIX23,CAPN10,RPL13A,BANP,FAM136A,RPL37A,THOC1,SURF1,NUBP2,NUTF2,GPN2,INTS11,FIS1,MRPL24,P2RY11,SPACA9,STYXL1,SMPD2,PSMC3,NAA38,PIDD1,NME4,JTB,AP5Z1,TBL3,CWC15,CCDC106,NFYC,CCDC137,NAA10,FBXO44,NELFE,METTL23,EXD3,TMEM120A,PCED1A,STX8,TUSC2,EVA1B,MVB12A,C11orf98,ELP5,TBCB,PGP,CHMP2A,BRMS1,MRPS15,DYNLT2,BRF1,THOC6,POLRMT,UBOX5,PQBP1,LENG1,TMEM186,PEX11G,CCHCR1,PRMT7,ZFYVE19,IFI27L2,SGF29,NEK8,NXT1,SF3A2,MBD3,POLR2L,SERF2,RPS10,VPS28,COMMD1,FIZ1,TRPT1,TATDN2,TM7SF2,PSPN,VPS4A,DAD1,CD2BP2,IFT20,PTOV1,PCSK4,ALKBH4,CDC37,PYURF,SPC24,AP4M1,KRTCAP2,KHDC1,LRWD1,TMEM134,POP5,BTBD6,SYF2,ORAI3,NTHL1,MYL5,CUEDC2,METTL26,UCKL1,UBE2L3,SCAND1,PSME3IP1,STK32C,UBXN11,HSPBP1,PTCD1,PPCDC,S100A13,RSAD1,NCAPH2,ATPAF2,AKR7A2,RP9,RALY,TRIOBP,JOSD2,CCDC51,SPAG7,TMEM187,SRA1,NOSIP,MVD,ENKD1,ATP5IF1,CPTP,BLOC1S1,NDUFS6,NUDT1,PYM1,ATP5F1E,AP2S1,PEF1,ZBTB8OS,NUDC,TRMU,CCDC107,POMT1,PSMA2,SEM1,STMP1,ARF5,CHTF18,NDUFV1,CDPF1,UBE2J2,NAT14,C1orf35,LSM10,TIMM13,C7orf26,LYPLA2,BUD23,ZCWPW1,NPRL2,KLHDC4,GFER,HHLA3,MIEN1,LSM5,SLC66A1,DDTL,SGSM3,TP53I13,SEC61B,B4GALT7,COQ4,COPS9,DHRS12,ZMAT5,STX10,KAT2A,ECI1,ARMC5,UBALD1,PMF1-BGLAP,SNU13,LRRC23,TMEM223,SNRPD3,TMEM86B,COMTD1,SLC25A10,ENDOV,COPE,DPY30,PPIE,MRPL11,FAM50A,ITPA,BAD,MAP2K2,ELP6,ALKBH7,TMEM258,ERMARD,MYL6,GEMIN7,GEMIN6,MIB2,MZT2B,HDAC10,HAUS7,HEXIM2,SCRN2,ATRAID,ANKS3,NOXA1,GON7,UCK1,SMDT1,PIGQ,SEC61G,ANKRD54,TXNRD2,RASSF7,TAF10,RNF25,COX4I1,SAC3D1,CENPS,MZT2A,PSMG4,DVL1,RETREG3,ARFRP1,CIAO2B,KIAA2013,MCRIP2,IFI27L1,BRAT1,AAMDC,PELP1,PSMG3,MRPL27,MYL6B,UQCR10,C19orf25,FAM234A,ARPC4,MYG1,KPTN,CSKMT,ERCC1,PSMB1,ZMYND19,TLE5,NAT9,ABHD14A,LUC7L,LSM2,TRMT61A,COA5,MICOS10,PPAN,C14orf93,DPH7,SSBP1,TRA2A,RNF126,NSMCE4A,ATP5F1D,MRPL43,APRT,CEP131,TOMM7,RUVBL2,WDR74,NOP53,HEBP2,SMIM19,FKBP2,IMMP1L,HSD17B10,SRRT,NDUFB10,RPS17,WRAP73,TPRA1,PRDX5,TAF6L,UBA52,CFDP1,RPS29,DNAJC30,TXN2,MRPS26,IRF3,GPANK1,IMP3,SERGEF,NDUFA13,CHCHD5,C7orf50,C1orf122,C16orf86,RRNAD1,GADD45GIP1,SNRPD2,ZSWIM7,SNF8,EIF6,HRAS,HSBP1,DDX39A,ATAD3B,ZNHIT2,MUTYH,BANF1,BCL7C,TMEM9,GSTZ1,IFT27,ZNHIT1,PHKG2,NARF,PMF1,SARS2,BUD31,POLR2J,PPP1R16A,SS18L2,SWSAP1,SENP3,RFXANK,ERCC2,CLN3,UBE2D4,POLR2I,CENPT,ZGLP1,UROS,CFAP410,MRTO4,LSM4,C1orf50,SNRPB,DNAJB2,APOM,BEND5,UFD1,C20orf27,ATP5MJ,SAMD1,RABAC1,UBL5,RPS8,RPS11,PLEKHJ1,CXXC1,ELMOD3,C8orf82,TXNL4A,PARD6A,STX5,GPATCH3,NDUFB7,ING4,NSUN5,UBXN1,THYN1,PGLS,PEX16,TELO2,ETFB,TEDC1,FAF1,AUP1,FAM228B,WASHC1,PDAP1,TIGD1,KLC1,GPS2,PEMT,RPL36A,NDUFC1,COA8,THAP3,NOL12,MTFR1L,ARMC7,MOSPD3,CLASRP,OAZ1,TTC32,MOB2,COMMD6,COASY,SPATA33,SMG9,TIMM29,TMA7,ITGAE,EMC9,PAM16,YBEY,POMZP3,TPRKB,SPATA24,KLHDC3,PSMC5,NEDD8,DUSP28,BOLA1,PXMP2,TSR3,RPS19BP1,SMIM4,YPEL3,SAP30BP,RNASEH2C,VPS16,PLEKHO1,TMEM11,NSMCE1,PIN1,ATP5MC2,RHBDD3,TMEM238,NDUFV3,DGCR6L,PIGU,PMPCA,REX1BD,TFPT,HSD11B1L,FASTK,CYHR1,SIRT6,ECH1,DXO,HSPB11,ANKRD13D,MRPL54,FAM174C | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ANKRD39,OAZ1,MRPL4,YDJC,CNPY3,KRTCAP2,TBL3,NUDC,METTL12,DHPS,PEX11G,CCDC167,C11orf98,CLPP,OXLD1,LPAR2,GNB2,PARK7,TRMU,PQBP1,CUEDC2,GPATCH3,EIF3G,E4F1,SPC24,AIP,MRPL51,GPANK1,C7orf50,SNRPC,ITPA,TATDN2,B4GALT7,GFER,TMEM160,TIMM17B,IDNK,LAMTOR4,MIIP,CDC34,HINT2,RAD9A,OCEL1,C3orf62,UBALD2,CXXC1,RPSA,C14orf2,RBM42,CCDC137,NT5C,FAM234A,C14orf142,ECI1,S100A13,COMMD3,MAP2K2,APOM,POMT1,CDPF1,GADD45GIP1,C16orf91,USMG5,SLC25A10,LHPP,WDR83,NMRAL1,FKBP8,KIAA2013 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | SEC24B,NUP98,SMARCC2,RP2,SETD7,UHRF1BP1L,MSN,USP32,TMEM30A,MOB1A,SYNJ1,MYOF,TAF2,CDK17,MTM1,SEC31A,TMEM131,PLBD2,CANX,CSNK1A1,KIF5B,MFAP3,TRAPPC10,FNDC3B,SGTB,PARP9,SLC25A24,TEAD1,RLIM,BECN1,PARP4 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | IDH3A,SLC35E1,FNIP1,DENND4C,UHRF1BP1L,MYH9,RNF123,BECN1,USF3,HIPK1,SMARCC2,TACC1,SMCR8,SNX6,PCDHGC3,TAOK3,LARP1,APC,PTPN11,SCYL2,PLEKHB2,HECTD1,NEDD1,DNAJC14,SCFD2,SEC24B,CLTC,ITPRIPL2,ATP2A2,FAM91A1,ATP11B,PRRC2C,M6PR,MFSD6,WWP1,LYN,ILK,RNF111,TPP1,USP32,G3BP1,DYNC1I2,PARP9,DOCK7,CLIP1,CORO1C,SLC25A24,FBXW11,SEC23A,AP3B1,NCOA2,MAPK1,RAB35,RNF169,STIM1,DNAJB14,TBC1D2B,MYCBP2,RAB11FIP1,BAZ2A,NIPA2,USP9X,ACVR1,MYOF,TEAD1,SCARB2,UEVLD,NDST1,KBTBD4,GNPTAB,CERT1,SSH1,OSBPL8,KLHL5,NUP98,BCL9L,DDX60,ASAP1,ARHGEF18,ACTR2,DOCK9,SYNJ1,PLBD2,SBF2,EIF4G2,SPTLC1,NDFIP2,CSNK1A1,RO60,SETD7,AKAP13,IDS,SEC31A,TBC1D9B,CYFIP1,TAF2,ARL2BP,PICALM,CDC42BPB,DOCK10,F2R,ARFGEF1,AMBRA1,IPO7,FNDC3B,ARCN1,SEC24C,INPP4A,OAS3,SPOPL | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000237436 | ENST00000442889 | exon_skip_324294 | chr2:27774423-27774530 | -16.17 | -0.1948 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000237436 | ENST00000442889 | exon_skip_494079 | chr8:144099080-144099205 | -26.31 | -0.2230 | SHARPIN | ENST00000398712 | Frame-shift | | ENSG00000237436 | ENST00000442889 | exon_skip_445390 | chr5:150403120-150403312 | -38.86 | -0.2507 | CD74 | ENST00000009530 | In-frame | | ENSG00000237436 | ENST00000442889 | exon_skip_303345 | chr19:17227839-17228005 | -25.32 | -0.1699 | OCEL1 | ENST00000215061 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000237436.1 | ENST00000442889.1 | 49 | 177 | 326 |
|
