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lncRNA: ENSG00000236753

Summary for MKLN1-AS

Gene summary

Gene information	Ensembl ID	ENSG00000236753
	Gene symbol	MKLN1-AS
	Gene name	MKLN1 antisense RNA
	HGNC	40374
	Entrez ID	100506881
	Gene type	processed_transcript
	Synonyms	07q32.3\|MKLN1-AS
	UniProtAcc

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Structure and expression level for MKLN1-AS

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000236753	2.261148e+02	-1.111165e+00	7.476853e-02	-1.486140e+01	5.870000e-50	1.420000e-48	DOWN	KIRC
ENSG00000236753	2.446033e+02	-1.762612e+00	1.812522e-01	-9.724636e+00	2.370000e-22	4.790000e-21	DOWN	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000236753	-5.778267e-01	3.050060e-09	KICH	2.027332e-08
ENSG00000236753	-3.391443e-01	7.867131e-18	KIRC	4.627724e-17

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lncRNA-Protein interaction for MKLN1-AS

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000123636	BAZ2B	65.16	94.6014	Q9UIF8	TF,Epi	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000005483	KMT2E	51.38	93.631	Q8IZD2	Epi	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000055609	KMT2C	45.4	95.6637	Q8NEZ4	Epi	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000116539	ASH1L	43.86	91.9368	Q9NR48	TF,Epi	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000084093	REST	36.64	90.2284	Q13127	TF,Epi	ChIP-seq
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000080503	SMARCA2	86.62	93.8696	P51531	Epi	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000123636	BAZ2B	84.08	94.2834	Q9UIF8	TF,Epi	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000005483	KMT2E	70.03	95.6268	Q8IZD2	Epi	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000055609	KMT2C	61.82	93.6386	Q8NEZ4	Epi	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000106443	PHF14	53.26	90.9491	O94880	Epi	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000084093	REST	44.79	93.4465	Q13127	TF,Epi	ChIP-seq

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000123636	BAZ2B	65.16	94.5391	Q9UIF8	TF,Epi	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000116539	ASH1L	43.86	91.9839	Q9NR48	TF,Epi	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000084093	REST	36.64	91.4626	Q13127	TF,Epi	ChIP-seq
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000134852	CLOCK	35.57	91.3405	O15516	TF,Epi	ChIP-seq
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000123636	BAZ2B	84.08	94.347	Q9UIF8	TF,Epi	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000144747	TMF1	70.76	94.0256	P82094	TF	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000084093	REST	44.79	94.8508	Q13127	TF,Epi	ChIP-seq
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000164631	ZNF12	24.07	90.0939	P17014	TF	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000184939	ZFP90	22.97	91.7793	Q8TF47	TF	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000062194	GPBP1	17.13	91.0245	Q86WP2	TF	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000120690	ELF1	15.52	92.0864	P32519	TF	ChIP-seq

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000056097	ZFR	88.89	94.7908	Q96KR1	RBP	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000145907	G3BP1	21.55	92.3308	Q13283	RBP	NA
ENSG00000236753	ENST00000429067	MKLN1-AS	ENSG00000138757	G3BP2	17.49	90.7978	Q9UN86	RBP	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000056097	ZFR	65.01	91.7321	Q96KR1	RBP	NA
ENSG00000236753	ENST00000444245	MKLN1-AS	ENSG00000145907	G3BP1	13.11	90.2417	Q13283	RBP	NA

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lncRNA-DNA interaction for MKLN1-AS

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

GOPC,SPAG9,TMEM168,HIBADH,KRCC1,BET1,FPGT,IST1,RYBP,TNPO3,PIK3R4,TMEM254,PREPL,ATG5,ERI2,MOB1A,CEP120,ATXN7L1,TMEM167B,SLC35D2,KIF5B,TMEM17,LEPROT,BRD7,CILK1,POT1,ZNF3,FBXL3,IPP,DYNC2LI1,TMEM267,IQCE,CEP57,TBL1XR1,COPG2,SCRN1,SCP2,CHM,SPICE1,STAM2,VAMP4,SPTLC1,FNDC3A,FBXL4,DMTF1,UIMC1,SRI,ELF1,POLR1F,DARS2,VEZF1,NEK4,RABGAP1L,PIBF1,EFCAB14,INO80D,NHLRC3,IFT88,SH3YL1,ASTE1,UBE4A,IKZF5,DPY19L1,BRCC3,TCAIM,GTF3C3,AFTPH,NHLRC2,ANKIB1,TTC30B,PAK2,KRIT1,SLC25A40,PDPK1,COG5,RNPC3,WDR5B,ERLIN2,KDM5B,BECN1,ANKRD42,TOB1,FAM200A,KDELR2,LZTFL1,VPS50,TRNT1,COG6,PIGM,ABITRAM,RNF38,CNOT4,AIMP1,KMT2E,DDX59,SUMF2,ATP11B,GOLGA1,KMT2C,TMED5,LANCL1,KIAA1143,HUS1,ZMYM5,OSGEPL1,PEX1,IFT74,PTBP3,SAMD12,C1GALT1C1,SLC30A1,RAB11FIP2,PDCD6IP,MTPN,DPP8,CROT,APAF1,IMMP2L,B4GALT4,DPY19L4,SMG1,CAPN7,DENND11,TMEM209,SCYL3,PPP1R2,ADD3,XIAP,USP54,ATP7A,NAPEPLD,OPHN1,SKAP2,PURB,RB1,SPATA6,ESYT2,PPM1B,BLZF1,ASH1L,PAFAH2,ARHGEF35,CLOCK,UTP14C,KLHL9,BBS2,SP4,RBM43,KANSL1L,AGFG1,PARP4,TTC30A,UBQLN1,UBN2,ARHGEF5,GLT8D1,TRMT2B,ZBTB6,UBLCP1,FBXO3,THAP6,SEC23IP,ARMC10,ZNF862,VPS36,DCAF17,VPS41,MAP3K13,KLHL12,DYNC2I1,RSBN1L,SNX7,LCOR,SYPL1,UBE2H,AFDN,KLF3,SLC35A5,STK24,KDM7A,SBDS,CMTR2,STRN,TMEM182,RBM41,NPAT,EIF2AK1,GCC1,ATE1,HERPUD2,GTF2E1,AP1G1,LIG4,ABHD13,NBR1,PNPLA8,MCUR1,SRPK2,APPL2,GPALPP1,SLC37A3,PRKX,MKLN1,KCTD18,CASK,PAIP1,ZBED8,PLEKHA3,BRAF,TMEM139,YTHDC1,DLG1,COP1,PRKAA1,CDC40,VAV3,CCDC121,SYTL4,TMF1,SDCCAG8,RAB5A,ELK4,AHR,CADPS2,DUS4L,FAM149B1,MED23,OSBPL3,RBM18,GOLGB1,LMBRD1,FBXO11,SLC35F5,LMBR1,BBS9,DCUN1D1,METTL6,ABI1,MTIF2,TTC32,TES,CUL4A,TM2D1,RABL3,CBLL1,TM9SF3,NCKAP1,ZFR,HP1BP3,USP33,ALPK1,KIAA0319L,TAOK3,UBA3,TUT7,TMEM245,ANKRD28,TM9SF2,IARS2,PRELID3B,CYREN,CRCP,VSIG10,TRIM4,GPBP1,POC1B,GK5,MFF,LSG1,RBBP5,CEP41,MANSC1,RAD50,G3BP2,RBM48,SCRN3,STAG2,STX17,PLS1,PIGK,SLC30A6,SNX4,ARHGAP12,COBLL1,PUM2,PIGF,LIPT1,CWF19L2,SEPTIN7,NT5C2,ELF2,VPS54,NDUFA5,DHX36,MIOS,TRIP12,MKRN1,UEVLD,F11R,TMEM123,RAPGEF5,SP3,CDC14B,LUC7L2,SDAD1,RYK,TGOLN2,MAN1A2,STXBP3,TYW1,BAZ2B,TOX3,ARHGEF12,ANKMY2,GALNT3,BICRAL,YAP1,PMS2,SNX13,RINT1,TXNIP,PALB2,ANKFY1,BROX,PHOSPHO2,PCMTD1,TMEM248,MRPS14,NSUN3,GCA,ADAT1,WASL,TSPAN6,HARBI1,TAB3,SWT1,DYNC1LI2,CEPT1,TUFT1,TTC33,SUCLA2,ITFG1,TBC1D5,PEX11B,MED13,TDRKH,CUL3,RBM33,KBTBD2,RAD17

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for MKLN1-AS

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

MAP1S,REEP4,TUBB4B,CLN6,USF2,NDUFS8

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for MKLN1-AS

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000236753	ENSG00000000003	TSPAN6	COAD,KICH,KIRC,READ,UVM		KICH,KIRC
ENSG00000236753	ENSG00000032742	IFT88	COAD,KICH,KIRC,KIRP,LGG,READ		KICH
ENSG00000236753	ENSG00000079482	OPHN1	COAD,KICH,KIRC,KIRP,LGG		KIRC
ENSG00000236753	ENSG00000082438	COBLL1	COAD,KICH,KIRC,KIRP,PAAD,READ		KIRC
ENSG00000236753	ENSG00000103460	TOX3	COAD,KIRC,KIRP,PAAD,READ		KIRC
ENSG00000236753	ENSG00000106049	HIBADH	COAD,KICH,KIRC,KIRP,READ,SKCM,UVM		KIRC
ENSG00000236753	ENSG00000106771	TMEM245	COAD,KICH,KIRC,KIRP,UVM		KIRC
ENSG00000236753	ENSG00000115339	GALNT3	COAD,KICH,KIRC,PAAD,READ		KICH,KIRC
ENSG00000236753	ENSG00000132122	SPATA6	COAD,KICH,KIRC,KIRP,PAAD,UVM		KICH
ENSG00000236753	ENSG00000134215	VAV3	COAD,KICH,KIRC,READ,UVM		KIRC
ENSG00000236753	ENSG00000136143	SUCLA2	COAD,KICH,KIRC,READ,UVM		KIRC
ENSG00000236753	ENSG00000138036	DYNC2LI1	COAD,KICH,KIRC,READ,SKCM,UVM		KICH
ENSG00000236753	ENSG00000143367	TUFT1	COAD,KICH,KIRC,PAAD,READ,UVM		KICH,KIRC
ENSG00000236753	ENSG00000148700	ADD3	COAD,KICH,PAAD,READ,UVM		KICH
ENSG00000236753	ENSG00000161048	NAPEPLD	COAD,KICH,KIRC,KIRP,PAAD,READ,SKCM,UVM		KICH,KIRC
ENSG00000236753	ENSG00000168216	LMBRD1	COAD,KICH,KIRC,KIRP,READ,UVM		KICH
ENSG00000236753	ENSG00000170385	SLC30A1	COAD,KICH,KIRC,KIRP,UVM		KICH
ENSG00000236753	ENSG00000177570	SAMD12	COAD,KIRC,KIRP,PAAD,READ		KIRC
ENSG00000236753	ENSG00000179152	TCAIM	COAD,KICH,KIRC,PAAD,READ,UVM		KIRC
ENSG00000236753	ENSG00000185515	BRCC3	COAD,KIRC,KIRP,PAAD,READ,UVM		KIRC
ENSG00000236753	ENSG00000196659	TTC30B	COAD,KICH,KIRC,SKCM,UVM		KICH
ENSG00000236753	ENSG00000213625	LEPROT	COAD,KICH,KIRC,KIRP,UVM		KICH
ENSG00000236753	ENSG00000005469	CROT	GBM,KIRC,KIRP,READ,SKCM,UVM		KIRC
ENSG00000236753	ENSG00000102362	SYTL4	GBM,KICH,KIRC,KIRP,LGG		KICH,KIRC
ENSG00000236753	ENSG00000158006	PAFAH2	GBM,KICH,KIRC,PAAD,SKCM,STAD,UVM		KIRC
ENSG00000236753	ENSG00000183943	PRKX	GBM,KICH,KIRC,KIRP,LGG		KICH,KIRC
ENSG00000236753	ENSG00000197557	TTC30A	GBM,KICH,KIRC,SKCM,UVM		KICH
ENSG00000236753	ENSG00000120756	PLS1	KICH,KICH,KIRC,KIRC,KIRP,KIRP,LUAD,PAAD,PAAD,STAD,STAD		KICH,KICH
ENSG00000236753	ENSG00000081803	CADPS2	KICH,KIRC,KIRP,PAAD,UVM		KIRC
ENSG00000236753	ENSG00000129103	SUMF2	KICH,KIRC,KIRP,READ,SKCM		KICH
ENSG00000236753	ENSG00000178826	TMEM139	KICH,KIRP,PAAD,READ,STAD		KICH
ENSG00000236753	ENSG00000186889	TMEM17	KICH,KIRC,KIRP,SKCM,UVM		KICH
ENSG00000236753	ENSG00000265972	TXNIP	KICH,KIRC,KIRP,LGG,UVM		KICH
ENSG00000236753	ENSG00000136193	SCRN1	KIRC,KIRP,READ,SKCM,UVM		KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000236753	ENST00000429067	NDUFS8	ENSG00000110717	ENST00000313468	-0.3084	1757	KICH	-
ENSG00000236753	ENST00000429067	NDUFS8	ENSG00000110717	ENST00000528492	-0.4344	1757	KICH	-
ENSG00000236753	ENST00000429067	NDUFS8	ENSG00000110717	ENST00000531228	-0.1689	1684	KICH	-
ENSG00000236753	ENST00000429067	CLN6	ENSG00000128973	ENST00000566347	-0.1803	1503	KICH	-
ENSG00000236753	ENST00000429067	CLN6	ENSG00000128973	ENST00000538696	-0.4716	1	KICH	-
ENSG00000236753	ENST00000429067	CLN6	ENSG00000128973	ENST00000564752	-0.1371	1900	KICH	-
ENSG00000236753	ENST00000429067	REEP4	ENSG00000168476	ENST00000523293	-0.2038	1941	KIRC,KICH	-
ENSG00000236753	ENST00000444245	NDUFS8	ENSG00000110717	ENST00000313468	-0.1933	34	KICH	-
ENSG00000236753	ENST00000444245	NDUFS8	ENSG00000110717	ENST00000528492	-0.2090	77	KICH	-
ENSG00000236753	ENST00000444245	NDUFS8	ENSG00000110717	ENST00000531228	-0.1544	16	KICH	-
ENSG00000236753	ENST00000444245	CLN6	ENSG00000128973	ENST00000566347	-0.2151	1	KICH	-
ENSG00000236753	ENST00000444245	CLN6	ENSG00000128973	ENST00000538696	-0.2096	10	KICH	-
ENSG00000236753	ENST00000444245	CLN6	ENSG00000128973	ENST00000564752	-0.1628	254	KICH	-
ENSG00000236753	ENST00000444245	REEP4	ENSG00000168476	ENST00000306306	-0.1041	1	KIRC,KICH	-
ENSG00000236753	ENST00000444245	REEP4	ENSG00000168476	ENST00000523293	-0.1402	44	KIRC,KICH	-
ENSG00000236753	ENST00000447904	NDUFS8	ENSG00000110717	ENST00000313468	-0.1923	652	KICH	-
ENSG00000236753	ENST00000447904	NDUFS8	ENSG00000110717	ENST00000528492	-0.2664	56	KICH	-
ENSG00000236753	ENST00000447904	NDUFS8	ENSG00000110717	ENST00000531228	-0.1397	582	KICH	-
ENSG00000236753	ENST00000447904	CLN6	ENSG00000128973	ENST00000566347	-0.2030	536	KICH	-
ENSG00000236753	ENST00000447904	CLN6	ENSG00000128973	ENST00000538696	-0.1716	660	KICH	-
ENSG00000236753	ENST00000447904	CLN6	ENSG00000128973	ENST00000564752	-0.1069	520	KICH	-
ENSG00000236753	ENST00000447904	REEP4	ENSG00000168476	ENST00000523293	-0.1598	238	KIRC,KICH	-
ENSG00000236753	ENST00000416220	NDUFS8	ENSG00000110717	ENST00000313468	-0.1933	83	KICH	-
ENSG00000236753	ENST00000416220	NDUFS8	ENSG00000110717	ENST00000528492	-0.3229	13	KICH	-
ENSG00000236753	ENST00000416220	NDUFS8	ENSG00000110717	ENST00000531228	-0.1544	65	KICH	-
ENSG00000236753	ENST00000416220	NDUFS8	ENSG00000110717	ENST00000524810	-0.1111	1	KICH	-
ENSG00000236753	ENST00000416220	CLN6	ENSG00000128973	ENST00000566347	-0.1626	32	KICH	-
ENSG00000236753	ENST00000416220	CLN6	ENSG00000128973	ENST00000538696	-0.4716	1	KICH	-
ENSG00000236753	ENST00000416220	CLN6	ENSG00000128973	ENST00000564752	-0.1193	1	KICH	-
ENSG00000236753	ENST00000416220	REEP4	ENSG00000168476	ENST00000334530	-0.1146	1	KIRC,KICH	-
ENSG00000236753	ENST00000416220	REEP4	ENSG00000168476	ENST00000523293	-0.1402	93	KIRC,KICH	-
ENSG00000236753	ENST00000454515	NDUFS8	ENSG00000110717	ENST00000313468	-0.1933	21	KICH	-
ENSG00000236753	ENST00000454515	NDUFS8	ENSG00000110717	ENST00000528492	-0.6500	18	KICH	-
ENSG00000236753	ENST00000454515	NDUFS8	ENSG00000110717	ENST00000531228	-0.1395	3	KICH	-
ENSG00000236753	ENST00000454515	CLN6	ENSG00000128973	ENST00000566347	-0.2030	254	KICH	-
ENSG00000236753	ENST00000454515	CLN6	ENSG00000128973	ENST00000538696	-0.1835	1	KICH	-
ENSG00000236753	ENST00000454515	CLN6	ENSG00000128973	ENST00000564752	-0.1628	281	KICH	-
ENSG00000236753	ENST00000454515	REEP4	ENSG00000168476	ENST00000523293	-0.1728	30	KIRC,KICH	-
ENSG00000236753	ENST00000447514	NDUFS8	ENSG00000110717	ENST00000313468	-3.3350	149	KICH	-
ENSG00000236753	ENST00000447514	NDUFS8	ENSG00000110717	ENST00000528492	-3.3350	154	KICH	-
ENSG00000236753	ENST00000447514	NDUFS8	ENSG00000110717	ENST00000531228	-0.1604	105	KICH	-
ENSG00000236753	ENST00000447514	NDUFS8	ENSG00000110717	ENST00000524810	-0.1271	1	KICH	-
ENSG00000236753	ENST00000447514	CLN6	ENSG00000128973	ENST00000566347	-0.2208	95	KICH	-
ENSG00000236753	ENST00000447514	CLN6	ENSG00000128973	ENST00000538696	-0.2466	133	KICH	-
ENSG00000236753	ENST00000447514	CLN6	ENSG00000128973	ENST00000564752	-0.1275	150	KICH	-
ENSG00000236753	ENST00000447514	REEP4	ENSG00000168476	ENST00000523293	-0.1942	118	KIRC,KICH	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000236753.4	ENST00000429067.4	111	224	559
ENSG00000236753.4	ENST00000444245.4	86	571	311
ENSG00000236753.4	ENST00000447904.4	65	194	0
ENSG00000236753.4	ENST00000416220.4	86	794	534
ENSG00000236753.4	ENST00000454515.4	86	534	274
ENSG00000236753.4	ENST00000447514.1	82	466	218

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential