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lncRNA: ENSG00000236618

Summary for PITPNA-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000236618
	Gene symbol	PITPNA-AS1
	Gene name	PITPNA antisense RNA 1
	HGNC	44116
	Entrez ID	100306951
	Gene type	antisense
	Synonyms	17p13.3\|PITPNA-AS1
	UniProtAcc

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Structure and expression level for PITPNA-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000236618	2.002905e+02	1.372880e+00	2.768138e-01	4.959579e+00	7.060000e-07	6.010000e-06	UP	GBM
ENSG00000236618	1.945428e+02	1.342451e+00	1.109549e-01	1.209907e+01	1.070000e-33	1.350000e-32	UP	LUSC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000236618	6.053040e-01	1.057930e-05	CHOL	7.233486e-05
ENSG00000236618	-3.798089e-01	2.415788e-04	KICH	3.795566e-04

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lncRNA-Protein interaction for PITPNA-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for PITPNA-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for PITPNA-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

DIAPH1,SEC24A,ABHD2,ATP2A2,ANTXR2,MACF1,TBC1D2B,PTAFR,PML,SLC36A1,RAB31,IL4R,FLNA,FCGR2A,MYOF,CPEB4,HSPG2,CAPN1,PDLIM5,KIF13B,ACTN4,SLFN5,STING1,STS,DRAM1,ATP2B4,ARHGAP26,ERAP1,OPTN,PTPRE,AFF1,GNPTAB,DNAJC13,UBR1,TNS1,IQSEC1,LRP10,MYADM,OSMR,IQGAP1,CERT1,CAST,SSH1,MAP4,KIAA1109,CLIP1,SNTB2,FLVCR2,MLKL,PCDH1,MYO1F,LDLR,SEC23A,KIAA0232,LGALS3,FNDC3B,UBE4A,CFH,BCL9L,SPTLC2,INPP4A,NFIC,FYCO1,DOCK9,PPP3CA,PLBD2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000236618	ENST00000425081	exon_skip_27178	chr1:53233541-53233652	-10.20	-0.1200	MAGOH	ENST00000371470	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000236618	ENST00000425081	exon_skip_6419	chr1:51756319-51756358	-9.21	-0.2362	OSBPL9	ENST00000428468	In-frame
ENSG00000236618	ENST00000425081	exon_skip_141221	chr16:3023473-3023530	-16.24	-0.3064	HCFC1R1	ENST00000574980	In-frame
ENSG00000236618	ENST00000425081	exon_skip_285471	chr17:3723287-3723383	-10.90	-0.1346	ITGAE	ENST00000263087	In-frame
ENSG00000236618	ENST00000425081	exon_skip_436498	chr5:96729152-96729209	-7.57	-0.1992	CAST	ENST00000341926,ENST00000395813	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000236618	hsa-mir-1258	ENST00000425081	chr17:1516974-1517054	180.00	-106.41	71	NA
ENSG00000236618	hsa-mir-1258	ENST00000425081	chr17:1517366-1517440	164.00	-93.22	75	NA
ENSG00000236618	hsa-mir-1258	ENST00000425081	chr17:1517257-1517324	147.00	-88.22	70	NA
ENSG00000236618	hsa-mir-1258	ENST00000425081	chr17:1517166-1517238	140.00	-85.96	65	NA
ENSG00000236618	hsa-mir-223	ENST00000425081	chr17:1516937-1517049	188.00	-109.65	112	NA
ENSG00000236618	hsa-mir-223	ENST00000425081	chr17:1517128-1517237	169.00	-85.25	109	NA
ENSG00000236618	hsa-mir-223	ENST00000425081	chr17:1517239-1517362	154.00	-92.51	119	NA
ENSG00000236618	hsa-mir-146b	ENST00000425081	chr17:1517233-1517312	167.00	-57.24	78	NA
ENSG00000236618	hsa-mir-146b	ENST00000425081	chr17:1517118-1517190	163.00	-53.15	73	NA

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Variants for PITPNA-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000236618	ENST00000425081	CFLAR	ENSG00000003402	ENST00000443227	-0.1001	1	-	LUSC
ENSG00000236618	ENST00000425081	CFLAR	ENSG00000003402	ENST00000395148	-0.1138	1	-	LUSC
ENSG00000236618	ENST00000425081	CFLAR	ENSG00000003402	ENST00000423241	-0.1712	60	-	LUSC
ENSG00000236618	ENST00000425081	CFLAR	ENSG00000003402	ENST00000457277	-0.1874	1	-	LUSC
ENSG00000236618	ENST00000425081	CFLAR	ENSG00000003402	ENST00000479953	-0.1675	162	-	LUSC
ENSG00000236618	ENST00000425081	PTAFR	ENSG00000169403	ENST00000305392	-0.1004	1	-	LUSC
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000263036	-0.3508	80	-	GBM
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000378764	-0.1118	4	-	GBM
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000482140	-0.1346	1	-	GBM
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000378757	-0.1118	1	-	GBM
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000378752	-0.1118	1	-	GBM
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000378748	-0.1118	1	-	GBM
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000378747	-0.1118	1	-	GBM
ENSG00000236618	ENST00000425081	OPTN	ENSG00000123240	ENST00000486862	-0.1685	352	-	GBM
ENSG00000236618	ENST00000425081	FLVCR2	ENSG00000119686	ENST00000539311	-0.1814	1	-	LUSC
ENSG00000236618	ENST00000425081	MACF1	ENSG00000127603	ENST00000484793	-0.1297	98	-	GBM,LUSC
ENSG00000236618	ENST00000425081	DRAM1	ENSG00000136048	ENST00000544152	-0.1107	1	-	LUSC
ENSG00000236618	ENST00000425081	MYO1F	ENSG00000142347	ENST00000598005	-0.1165	1	-	LUSC
ENSG00000236618	ENST00000425081	MYO1F	ENSG00000142347	ENST00000602136	-0.1185	1	-	LUSC
ENSG00000236618	ENST00000425081	MYO1F	ENSG00000142347	ENST00000598321	-0.1261	1	-	LUSC
ENSG00000236618	ENST00000425081	FCGR2A	ENSG00000143226	ENST00000536731	-0.2064	38	-	LUSC
ENSG00000236618	ENST00000425081	ARHGAP26	ENSG00000145819	ENST00000443045	-0.1100	40	-	GBM
ENSG00000236618	ENST00000425081	ARHGAP26	ENSG00000145819	ENST00000419676	-0.1278	53	-	GBM
ENSG00000236618	ENST00000425081	ARHGAP26	ENSG00000145819	ENST00000424007	-0.1048	1	-	GBM
ENSG00000236618	ENST00000425081	ANTXR2	ENSG00000163297	ENST00000404191	-0.3197	17	-	LUSC
ENSG00000236618	ENST00000425081	ANTXR2	ENSG00000163297	ENST00000346652	-0.9537	33	-	LUSC
ENSG00000236618	ENST00000425081	KIAA0232	ENSG00000170871	ENST00000508423	-0.1750	48	-	GBM
ENSG00000236618	ENST00000425081	ATP2A2	ENSG00000174437	ENST00000548169	-0.1032	121	-	GBM
ENSG00000236618	ENST00000425081	ATP2A2	ENSG00000174437	ENST00000553144	-0.1515	14	-	GBM
ENSG00000236618	ENST00000425081	MYADM	ENSG00000179820	ENST00000391768	-0.1321	74	-	LUSC
ENSG00000236618	ENST00000425081	SPTLC2	ENSG00000100596	ENST00000556607	-0.1224	1	-	GBM
ENSG00000236618	ENST00000425081	STS	ENSG00000101846	ENST00000217961	-0.1029	1	-	GBM,LUSC
ENSG00000236618	ENST00000425081	CERT1	ENSG00000113163	ENST00000261415	-0.4825	93	-	GBM,LUSC
ENSG00000236618	ENST00000425081	KIAA1109	ENSG00000138688	ENST00000446180	-0.1185	28	-	GBM,LUSC
ENSG00000236618	ENST00000425081	KIAA1109	ENSG00000138688	ENST00000419325	-0.1033	211	-	GBM,LUSC
ENSG00000236618	ENST00000425081	KIAA1109	ENSG00000138688	ENST00000442707	-0.5043	195	-	GBM,LUSC
ENSG00000236618	ENST00000425081	PCDH1	ENSG00000156453	ENST00000394536	-0.1250	1	-	GBM,LUSC
ENSG00000236618	ENST00000425081	FYCO1	ENSG00000163820	ENST00000438446	-0.1006	64	-	LUSC
ENSG00000236618	ENST00000425081	INPP4A	ENSG00000040933	ENST00000409851	-0.2138	136	-	GBM
ENSG00000236618	ENST00000425081	INPP4A	ENSG00000040933	ENST00000409540	-0.5235	37	-	GBM
ENSG00000236618	ENST00000425081	TNS1	ENSG00000079308	ENST00000453356	-0.1538	5	-	LUSC
ENSG00000236618	ENST00000425081	DOCK9	ENSG00000088387	ENST00000427887	-0.1019	50	-	GBM,LUSC
ENSG00000236618	ENST00000425081	PPP3CA	ENSG00000138814	ENST00000394853	-0.1107	1	-	GBM
ENSG00000236618	ENST00000425081	PPP3CA	ENSG00000138814	ENST00000507176	-0.1107	1	-	GBM
ENSG00000236618	ENST00000425081	IQSEC1	ENSG00000144711	ENST00000613206	-0.2074	75	-	GBM,LUSC
ENSG00000236618	ENST00000425081	KIF13B	ENSG00000197892	ENST00000523130	-0.8233	192	-	GBM,LUSC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000236618	PITPNA-AS1,hsa-mir-146b,SMIM7	CHOL,THCA,GBM,DLBC,PAAD
ENSG00000236618	PITPNA-AS1,hsa-mir-146b,C14orf93	CHOL,UVM,GBM,DLBC,PAAD
ENSG00000236618	PITPNA-AS1,hsa-mir-146b,ATP5MC2	CHOL,UVM,GBM,DLBC,PAAD
ENSG00000236618	PITPNA-AS1,hsa-mir-146b,SMIM26	CHOL,UVM,GBM,DLBC,PAAD
ENSG00000236618	PITPNA-AS1,hsa-mir-146b,ILVBL	CHOL,THCA,GBM,DLBC,PAAD
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,MVB12A	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,CDYL	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,STAMBP	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,DVL2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,ATRAID	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,NELFCD	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,C1orf131	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,VAT1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,LEMD2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,MGME1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SLC39A1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SNAP23	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SP2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,COG2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,ABCF1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,TMEM14C	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,AATF	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,HEATR6	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,CRTC2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,PHF12	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SMARCE1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SSR1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,POLR2D	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,BPNT1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SNRNP27	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,GTF3C2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,NSL1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,MUTYH	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,NCSTN	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,C1orf56	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,G3BP1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,MITD1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,TUBD1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,CHTOP	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,C6orf47	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,XRCC4	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SPRTN	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,AAR2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,RRNAD1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,HDGF	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,CDC42SE1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,CHD1L	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,VPS54	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,TMCO1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,GTF2A2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,H3-3A	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,COA4	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,AP3B1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,APH1A	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,UBE2A	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,STMP1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,EIF2D	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,TAF12	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SFT2D2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,BLOC1S5	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,PHF5A	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,GTF2F2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,CEP95	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,USP21	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,TTC27	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,C2orf68	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,GEMIN5	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,TMEM79	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,CDKAL1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,RHOA	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,FAM114A2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,SCAMP3	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,RBM22	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,OSGEPL1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,BROX	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,ABHD4	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,UNK	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,RIOK2	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,PPP4R1	KICH,CHOL,LGG,GBM,LIHC
ENSG00000236618	PITPNA-AS1,hsa-mir-1258,PIGC	KICH,CHOL,LGG,GBM,LIHC

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000236618.2	ENST00000425081.2	68	204	1

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential