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lncRNA: ENSG00000236540

Summary for AC006547.13

Gene summary

Gene information	Ensembl ID	ENSG00000236540
	Gene symbol	AC006547.13
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for AC006547.13

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000236540	1.295886e+02	-1.083888e+00	2.297168e-01	-4.718369e+00	2.380000e-06	1.780000e-05	DOWN	GBM
ENSG00000236540	1.187162e+02	1.496707e+00	2.681161e-01	5.582311e+00	2.370000e-08	2.110000e-07	UP	CHOL
ENSG00000236540	5.464387e+02	2.424682e+00	1.414196e-01	1.714531e+01	6.810000e-66	2.060000e-63	UP	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000236540	5.710963e-01	4.187443e-05	CHOL	1.645626e-04
ENSG00000236540	6.332924e-01	2.744820e-11	KICH	4.707074e-10

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lncRNA-Protein interaction for AC006547.13

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000168137	SETD5	57.41	92.7454	Q9C0A6	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000141867	BRD4	51.49	91.3773	O60885	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000085224	ATRX	48.67	95.7743	P46100	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000147133	TAF1	42.27	90.4342	P21675	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000104885	DOT1L	40.9	91.6301	Q8TEK3	TF,Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000167548	KMT2D	37.21	95.3616	O14686	Epi	NA
ENSG00000236540	ENST00000595864	AC006547.13	ENSG00000167548	KMT2D	26.7	92.2768	O14686	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000168137	SETD5	38.13	90.7473	Q9C0A6	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000141867	BRD4	34.41	94.0755	O60885	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000085224	ATRX	32.3	96.1277	P46100	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000147133	TAF1	27.57	90.3152	P21675	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000104885	DOT1L	26.7	93.5551	Q8TEK3	TF,Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000167548	KMT2D	22.56	95.5117	O14686	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000089094	KDM2B	20.35	90.0931	Q8NHM5	TF,Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000163635	ATXN7	18.9	90.1276	O15265	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000141644	MBD1	11.39	90.1055	Q9UIS9	TF,Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000145241	CENPC	50.95	91.1206	Q03188	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000196498	NCOR2	44.53	93.8401	Q9Y618	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000076108	BAZ2A	41.48	91.5424	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000601746	AC006547.13	ENSG00000196498	NCOR2	38.52	90.3534	Q9Y618	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000183495	EP400	36.14	90.0511	Q96L91	Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000171456	ASXL1	24.31	92.4638	Q8IXJ9	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000145241	CENPC	33.77	90.7662	Q03188	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000196498	NCOR2	28.73	95.6664	Q9Y618	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000076108	BAZ2A	27.16	90.4685	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000183495	EP400	21.66	94.0846	Q96L91	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000171456	ASXL1	14.38	93.9709	Q8IXJ9	Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000132275	RRP8	3.77	90.2794	O43159	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000100207	TCF20	47.84	94.3733	Q9UGU0	TF	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000076108	BAZ2A	41.48	92.15	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000104885	DOT1L	40.9	91.6994	Q8TEK3	TF,Epi	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000167232	ZNF91	37.38	92.5507	Q05481	TF	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000198040	ZNF84	28.76	90.7153	P51523	TF	NA
ENSG00000236540	ENST00000595864	AC006547.13	ENSG00000089094	KDM2B	23.48	90.0035	Q8NHM5	TF,Epi	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000102908	NFAT5	40.11	93.019	O94916	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000110851	PRDM4	34.48	91.838	Q9UKN5	TF,Epi	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000100207	TCF20	34.22	96.405	Q9UGU0	TF	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000100207	TCF20	32.14	94.8887	Q9UGU0	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000076108	BAZ2A	29.4	91.599	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000104885	DOT1L	29.29	95.2696	Q8TEK3	TF,Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000099326	MZF1	28.96	90.3148	P28698	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000099326	MZF1	28.79	91.3282	P28698	TF	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000076108	BAZ2A	27.16	90.4711	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000167232	ZNF91	26.95	95.22	Q05481	TF	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000104885	DOT1L	26.7	93.568	Q8TEK3	TF,Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000167232	ZNF91	23.1	92.9106	Q05481	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000146587	RBAK	21.15	93.0133	Q9NYW8	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000198040	ZNF84	20.68	93.73	P51523	TF	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000089094	KDM2B	20.35	90.0399	Q8NHM5	TF,Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000198040	ZNF84	17.3	91.0495	P51523	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000164631	ZNF12	14.96	92.9569	P17014	TF	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000141644	MBD1	11.39	90.1568	Q9UIS9	TF,Epi	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000141644	MBD1	10.59	92.0049	Q9UIS9	TF,Epi	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000142065	ZFP14	9.42	92.7025	Q9HCL3	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000180787	ZFP3	9.41	92.0221	Q96NJ6	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000256223	ZNF10	8.11	90.6768	P21506	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000185252	ZNF74	7.38	90.3932	Q16587	TF,RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000167766	ZNF83	5.92	91.5243	P51522	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000278129	ZNF8	4.74	91.8599	P17098	TF	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000167766	ZNF83	4.25	90.0892	P51522	TF	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000112511	PHF1	2.65	90.0279	O43189	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000004534	RBM6	37.13	94.9956	P78332	RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000159082	SYNJ1	36.54	93.2817	O43426	RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000198000	NOL8	32.74	95.0974	Q76FK4	RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000106344	RBM28	32.49	94.7897	Q9NW13	RBP	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000004534	RBM6	32.01	93.6991	P78332	RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000137776	SLTM	31.77	96.085	Q9NWH9	RBP	ENCODE
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000198000	NOL8	30.28	93.4738	Q76FK4	RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000076108	BAZ2A	29.4	90.7227	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000106344	RBM28	28.67	90.3705	Q9NW13	RBP	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000137776	SLTM	28.22	93.9426	Q9NWH9	RBP	ENCODE
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000076108	BAZ2A	27.16	90.3126	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000100650	SRSF5	22.19	90.0235	Q13243	RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000184863	RBM33	12.29	91.8504	Q96EV2	RBP	NA
ENSG00000236540	ENST00000600937	AC006547.13	ENSG00000167978	SRRM2	10.65	97.7593	Q9UQ35	RBP	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000167978	SRRM2	9.9	97.2631	Q9UQ35	RBP	NA
ENSG00000236540	ENST00000596334	AC006547.13	ENSG00000184863	RBM33	9.05	91.3151	Q96EV2	RBP	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000004534	RBM6	51.19	91.9436	P78332	RBP	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000198000	NOL8	46.02	92.3252	Q76FK4	RBP	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000106344	RBM28	45.53	93.0941	Q9NW13	RBP	NA
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000137776	SLTM	44.48	94.3815	Q9NWH9	RBP	ENCODE
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000076108	BAZ2A	41.48	91.664	Q9UIF9	TF,RBP,Epi	NA
ENSG00000236540	ENST00000595864	AC006547.13	ENSG00000137776	SLTM	32.16	91.7331	Q9NWH9	RBP	ENCODE
ENSG00000236540	ENST00000609644	AC006547.13	ENSG00000167978	SRRM2	15.18	96.6009	Q9UQ35	RBP	NA
ENSG00000236540	ENST00000601746	AC006547.13	ENSG00000167978	SRRM2	12.36	94.8298	Q9UQ35	RBP	NA
ENSG00000236540	ENST00000600617	AC006547.13	ENSG00000167978	SRRM2	10.65	90.828	Q9UQ35	RBP	NA
ENSG00000236540	ENST00000595864	AC006547.13	ENSG00000167978	SRRM2	10.32	92.3132	Q9UQ35	RBP	NA
ENSG00000236540	ENST00000609191	AC006547.13	ENSG00000167978	SRRM2	6.32	93.5704	Q9UQ35	RBP	NA

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lncRNA-DNA interaction for AC006547.13

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for AC006547.13

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000236540	ENST00000609191	exon_skip_382458	chr3:38131595-38131638	-8.33	-0.3085	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for AC006547.13

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000236540.6	ENST00000628442.1	83	36	284
ENSG00000236540.6	ENST00000415503.4	61	443	258
ENSG00000236540.6	ENST00000608610.4	130	117	506
ENSG00000236540.6	ENST00000600937.4	169	178	687
ENSG00000236540.6	ENST00000595864.4	106	108	428
ENSG00000236540.6	ENST00000600617.4	119	126	485
ENSG00000236540.6	ENST00000601746.4	119	319	678
ENSG00000236540.6	ENST00000598339.4	119	365	724
ENSG00000236540.6	ENST00000596334.4	105	742	425
ENSG00000236540.6	ENST00000609644.4	119	434	793
ENSG00000236540.6	ENST00000609191.1	106	111	431

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential