 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | MRPL52,OARD1,C11orf1,MMAB,STMN1,TCEA2,TEDC2,CFDP1,DNAJC30,EMG1,MRPS26,HDDC3,PSMA2,SNRNP25,PRR3,CDPF1,NDUFAB1,SWI5,UBTF,WDR53,HINT2,MKS1,C1orf35,NDUFAF6,HSDL1,MUTYH,BCL7C,EIF2B4,METTL5,SMUG1,WDR54,DTYMK,LSM3,WDR59,GFER,HIRIP3,PHKG2,NARF,NUBP2,LCMT1,SWSAP1,COA3,ACBD6,CLN3,COQ4,MRPL24,DUS2,GINS2,ARMC5,LSM4,RBMX,PMF1-BGLAP,USE1,RCCD1,RNPS1,UQCC2,TARBP2,VKORC1,LYRM4,MPLKIP,ENDOV,AAAS,METTL17,ITPA,RFC4,IMMP1L,NELFE,ELP6,METTL23,AGBL5,TBC1D10B,SBK1,RPAIN,PCED1A,BABAM1,GEMIN6,ING4,C11orf98,CDKN2AIPNL,THYN1,B3GALT6,INO80E,POLR2D,KNOP1,TMEM186,TRAIP,ZNF48,RAD51C,C12orf76,PRMT7,DHODH,TIMM8A,USP21,REXO4,SGF29,TIGD1,C12orf73,CENPS,NR2C2AP,GEMIN2,TRPT1,TM7SF2,TSEN54,VPS4A,HEMK1,PAFAH1B3,ZNF3,CD2BP2,RABEP2,MCRIP2,PSMG3,MEN1,MYL6B,C2orf68,SOX12,FAM234A,ZNRF1,CPSF3,NDUFB1,CENPH,DUSP28,POP5,CDIPT,BOLA1,ORAI3,YPEL3,LSM2,BCDIN3D,CUEDC2,HEXD,NSMCE1,TUFM,C14orf93,PSME3IP1,DPH5,APRT,HINFP,IQCC | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | FUS,C14orf93,CUEDC2,ZNF48,HEMK1,HINT2,LSM2,SBK1,FAM234A,NR2C2AP,RPSA,FKBPL,PRR14,BABAM1,ZNF3,PSMA2,ARIH2OS,ITPA,C2orf68,C16orf91,OXLD1,NDUFB1,TIMM8A,MRPL52,POLR2D | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PAK1,IL6ST | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000235560 | ENSG00000103550 | KNOP1 | CESC,KIRP,LAML,LGG,LUSC,OV,UCEC | LUSC | | | ENSG00000235560 | ENSG00000117632 | STMN1 | CESC,KIRP,LUSC,OV,THYM | LUSC | | | ENSG00000235560 | ENSG00000123415 | SMUG1 | CESC,DLBC,LAML,LGG,LUSC | LUSC | | | ENSG00000235560 | ENSG00000131153 | GINS2 | CESC,DLBC,LUSC,OV,THYM | LUSC | | | ENSG00000235560 | ENSG00000143793 | C1orf35 | CESC,DLBC,KIRP,LGG,LUSC,OV,THYM | LUSC | | | ENSG00000235560 | ENSG00000162062 | TEDC2 | CESC,KIRP,LGG,LUSC,THYM | LUSC | | | ENSG00000235560 | ENSG00000188322 | SBK1 | CESC,KIRP,LGG,LUSC,OV,THYM,UCS | LUSC | | | ENSG00000235560 | ENSG00000126953 | TIMM8A | DLBC,LAML,LGG,LUSC,UCEC | LUSC | | | ENSG00000235560 | ENSG00000153044 | CENPH | DLBC,LGG,LUSC,THYM,UCEC | LUSC | | | ENSG00000235560 | ENSG00000166965 | RCCD1 | DLBC,KIRP,LAML,LGG,LUSC,THYM | LUSC | | | ENSG00000235560 | ENSG00000092208 | GEMIN2 | KIRP,LAML,LGG,LUSC,THYM,UCEC | LUSC | | | ENSG00000235560 | ENSG00000185798 | WDR53 | KIRP,LAML,LGG,LUSC,UCS | LUSC | | | ENSG00000235560 | ENSG00000163918 | RFC4 | LGG,LUSC,OV,THYM,UCEC | LUSC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000235560 | ENST00000457283 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.2518 | 665 | - | LUSC | | ENSG00000235560 | ENST00000569752 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.2518 | 306 | - | LUSC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000235560.3 | ENST00000457283.3 | 142 | 1310 | 882 | | ENSG00000235560.3 | ENST00000569752.1 | 125 | 672 | 295 |
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