 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | S100A16,RARG,SSPN,FRMD6,UACA,ANTXR2,MACF1,SH3GLB1,RAI14,QKI,PLS1,BIRC2,PPP4R1,ELL2,FEZ2,NTAN1,NEK7,IL4R,BMP1,SPATS2L,FLNA,ARSB,MYH9,SNX29,APAF1,ZEB2,TNFRSF1A,PLSCR4,TPM4,AIDA,PDLIM5,TIPARP,YAP1,WWTR1,SP100,IL6ST,RCAN1,ITGA9,CDC27,CAST,EMP3,IL1R1,SEPTIN11,TPM3,MAP4,MORF4L1,ADGRE5,CLIP1,CORO1C,RNF19B,ITGB1,ANXA2,EDEM1,MAF,BZW1,SEC23A,GIT2,GNAI2,EPS15,CDV3,ARFGAP3,CAP1,TUBB6 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000235280 | ENST00000446789 | exon_skip_44998 | chr10:110132304-110132400 | -8.89 | -0.1252 | ADD3 | ENST00000356080 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_60345 | chr11:63903985-63904147 | -27.57 | -0.1767 | MARK2 | ENST00000402010 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_98384 | chr12:124327408-124327633 | -29.12 | -0.1300 | NCOR2 | ENST00000405201 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_146683 | chr16:85780378-85780473 | -22.34 | -0.2660 | EMC8 | ENST00000253457 | Frame-shift | | ENSG00000235280 | ENST00000446789 | exon_skip_384879 | chr3:52554723-52554879 | -32.65 | -0.2148 | PBRM1 | ENST00000296302 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_423795 | chr4:55888887-55888932 | -7.91 | -0.2260 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_461111 | chr6:90544551-90544632 | -13.84 | -0.2197 | MAP3K7 | ENST00000369329 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_386291 | chr3:108050577-108050602 | -7.07 | -0.5892 | CD47 | ENST00000361309 | Frame-shift | | ENSG00000235280 | ENST00000446789 | exon_skip_40119 | chr10:24494499-24494604 | -12.45 | -0.1399 | KIAA1217 | ENST00000376454 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000235280 | ENST00000446789 | exon_skip_21610 | chr1:9737497-9737554 | -7.85 | -0.3413 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_21628 | chr1:9756480-9756510 | -7.10 | -0.3227 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_30360 | chr1:150842423-150842468 | -8.37 | -0.3219 | ARNT | ENST00000358595 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_33516 | chr1:156938417-156938513 | -17.60 | -0.2316 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_104174 | chr13:79353152-79353224 | -8.33 | -0.1772 | RBM26 | ENST00000438737 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_287874 | chr17:29085603-29085648 | -7.10 | -0.4733 | MYO18A | ENST00000527372 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_361434 | chr21:25997359-25997416 | -10.18 | -0.2166 | APP | ENST00000346798 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_368285 | chr22:29329711-29329720 | -2.66 | -1.3300 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_382356 | chr3:37091466-37091538 | -7.64 | -0.1592 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_451515 | chr6:41080810-41080897 | -14.34 | -0.1938 | NFYA | ENST00000341376 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_106783 | chr14:55673171-55673255 | -6.10 | -0.1070 | KTN1 | ENST00000395314 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_96112 | chr12:109945259-109945349 | -14.42 | -0.1897 | GIT2 | ENST00000355312 | In-frame | | ENSG00000235280 | ENST00000446789 | exon_skip_376144 | chr3:100311832-100311877 | -5.50 | -0.2292 | TBC1D23 | ENST00000394144 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000235280 | hsa-mir-145 | ENST00000446789 | chr13:112968033-112968120 | 168.00 | -68.22 | 80 | NA | | ENSG00000235280 | hsa-mir-145 | ENST00000446789 | chr13:112967948-112968033 | 165.00 | -80.15 | 88 | NA | | ENSG00000235280 | hsa-mir-145 | ENST00000446789 | chr13:112967724-112967832 | 159.00 | -72.72 | 107 | NA | | ENSG00000235280 | hsa-mir-145 | ENST00000446789 | chr13:112967844-112967926 | 148.00 | -64.38 | 86 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000235280 | ENST00000446789 | WWTR1 | ENSG00000018408 | ENST00000467467 | -0.1474 | 34 | - | KICH,UCEC,COAD,READ | | ENSG00000235280 | ENST00000446789 | ARSB | ENSG00000113273 | ENST00000565165 | -0.2364 | 499 | - | KICH | | ENSG00000235280 | ENST00000446789 | PLSCR4 | ENSG00000114698 | ENST00000446574 | -0.1108 | 17 | - | KICH,UCEC,PCPG,COAD,READ | | ENSG00000235280 | ENST00000446789 | PLSCR4 | ENSG00000114698 | ENST00000493382 | -0.1167 | 217 | - | KICH,UCEC,PCPG,COAD,READ | | ENSG00000235280 | ENST00000446789 | ADGRE5 | ENSG00000123146 | ENST00000358600 | -0.1640 | 1 | - | KICH,UCEC | | ENSG00000235280 | ENST00000446789 | ITGB1 | ENSG00000150093 | ENST00000494395 | -0.1010 | 24 | - | KICH | | ENSG00000235280 | ENST00000446789 | TPM4 | ENSG00000167460 | ENST00000592822 | -0.2249 | 91 | - | KICH | | ENSG00000235280 | ENST00000446789 | S100A16 | ENSG00000188643 | ENST00000368705 | -0.1621 | 1 | - | KICH | | ENSG00000235280 | ENST00000446789 | ARFGAP3 | ENSG00000242247 | ENST00000437119 | -0.1280 | 75 | - | PCPG | | ENSG00000235280 | ENST00000446789 | FRMD6 | ENSG00000139926 | ENST00000557405 | -0.1569 | 55 | - | UCEC,PCPG,STAD,READ | | ENSG00000235280 | ENST00000446789 | FRMD6 | ENSG00000139926 | ENST00000555197 | -0.1628 | 419 | - | UCEC,PCPG,STAD,READ | | ENSG00000235280 | ENST00000446789 | ITGA9 | ENSG00000144668 | ENST00000422441 | -0.2913 | 67 | - | UCEC,PCPG,STAD | | ENSG00000235280 | ENST00000446789 | PLS1 | ENSG00000120756 | ENST00000497002 | -0.2070 | 467 | - | KICH,COAD,READ | | ENSG00000235280 | ENST00000446789 | BZW1 | ENSG00000082153 | ENST00000452790 | -0.1879 | 90 | - | PCPG | | ENSG00000235280 | ENST00000446789 | SSPN | ENSG00000123096 | ENST00000540266 | -0.5086 | 262 | - | KICH,UCEC,COAD,STAD,READ | | ENSG00000235280 | ENST00000446789 | SSPN | ENSG00000123096 | ENST00000535504 | -0.1776 | 508 | - | KICH,UCEC,COAD,STAD,READ | | ENSG00000235280 | ENST00000446789 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.4721 | 539 | - | UCEC,COAD,READ | | ENSG00000235280 | ENST00000446789 | UACA | ENSG00000137831 | ENST00000560441 | -0.1361 | 118 | - | KICH | | ENSG00000235280 | ENST00000446789 | UACA | ENSG00000137831 | ENST00000539319 | -0.4583 | 284 | - | KICH | | ENSG00000235280 | ENST00000446789 | NEK7 | ENSG00000151414 | ENST00000367383 | -0.1446 | 536 | - | UCEC,PCPG,READ | | ENSG00000235280 | ENST00000446789 | RCAN1 | ENSG00000159200 | ENST00000492600 | -0.1438 | 1 | - | KICH,COAD,READ | | ENSG00000235280 | ENST00000446789 | ANTXR2 | ENSG00000163297 | ENST00000404191 | -0.1499 | 5 | - | KICH,UCEC,COAD,STAD,READ | | ENSG00000235280 | ENST00000446789 | ANTXR2 | ENSG00000163297 | ENST00000346652 | -0.5265 | 100 | - | KICH,UCEC,COAD,STAD,READ | | ENSG00000235280 | ENST00000446789 | FEZ2 | ENSG00000171055 | ENST00000414288 | -0.1583 | 74 | - | UCEC,READ | | ENSG00000235280 | ENST00000446789 | FEZ2 | ENSG00000171055 | ENST00000432869 | -0.1011 | 1 | - | UCEC,READ | | ENSG00000235280 | ENST00000446789 | IL1R1 | ENSG00000115594 | ENST00000409329 | -0.1710 | 102 | - | KICH,PCPG | | ENSG00000235280 | ENST00000446789 | IL1R1 | ENSG00000115594 | ENST00000409288 | -0.1310 | 52 | - | KICH,PCPG | | ENSG00000235280 | ENST00000446789 | IL1R1 | ENSG00000115594 | ENST00000422532 | -0.1772 | 1 | - | KICH,PCPG | | ENSG00000235280 | ENST00000446789 | TNFRSF1A | ENSG00000067182 | ENST00000534885 | -0.1065 | 1 | - | PCPG | | ENSG00000235280 | ENST00000446789 | TNFRSF1A | ENSG00000067182 | ENST00000543995 | -0.1065 | 1 | - | PCPG | | ENSG00000235280 | ENST00000446789 | TNFRSF1A | ENSG00000067182 | ENST00000540022 | -0.3788 | 90 | - | PCPG | | ENSG00000235280 | ENST00000446789 | TNFRSF1A | ENSG00000067182 | ENST00000543048 | -0.1134 | 47 | - | PCPG | | ENSG00000235280 | ENST00000446789 | YAP1 | ENSG00000137693 | ENST00000531439 | -0.4450 | 79 | - | UCEC,PCPG | | ENSG00000235280 | ENST00000446789 | SPATS2L | ENSG00000196141 | ENST00000451764 | -0.2255 | 7 | - | KICH | | ENSG00000235280 | ENST00000446789 | SPATS2L | ENSG00000196141 | ENST00000409151 | -0.2255 | 1 | - | KICH | | ENSG00000235280 | ENST00000446789 | FLNA | ENSG00000196924 | ENST00000369850 | -0.1449 | 5 | - | KICH,UCEC,COAD,STAD,READ | | ENSG00000235280 | ENST00000446789 | FLNA | ENSG00000196924 | ENST00000344736 | -0.3058 | 100 | - | KICH,UCEC,COAD,STAD,READ |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000235280.2 | ENST00000446789.2 | 142 | 902 | 474 |
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