 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | NDUFB10,MRPL52,BLOC1S1,MZT2B,C11orf1,CHMP2A,NDUFA3,RAB17,ATRAID,POP5,COPS9,NMRAL1,MRPL24,NDUFA1,MICOS13,SMIM4,IMP3,ATP5MG,ECI1,NDUFAB1,UQCR11,ATP5F1D,NDUFC1,NDUFV3,APRT,PPP1R7,SERF2,HSCB,TXNDC17,VAMP8,SMIM22,STK16,MCRIP2,FAM174C,NDUFAF8 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | PARK7,UQCR11,OXLD1,HSCB,NMRAL1,MZT2B,ATRAID | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | DDR2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000234949 | ENSG00000118640 | VAMP8 | BRCA,CHOL,LUAD,OV,PRAD,UCEC | BRCA,UCEC | | | ENSG00000234949 | ENSG00000124839 | RAB17 | BRCA,CHOL,LUAD,OV,PRAD,SKCM,UCEC,UVM | BRCA,PRAD,UCEC | | | ENSG00000234949 | ENSG00000129235 | TXNDC17 | BRCA,CHOL,LUAD,PRAD,UCEC | BRCA,UCEC | | | ENSG00000234949 | ENSG00000140264 | SERF2 | BRCA,CHOL,LUAD,PRAD,UCEC | UCEC | | | ENSG00000234949 | ENSG00000143314 | MRPL24 | BRCA,LUAD,OV,PRAD,UCEC | BRCA | | | ENSG00000234949 | ENSG00000152082 | MZT2B | BRCA,CHOL,LUAD,PRAD,UCEC | BRCA | | | ENSG00000234949 | ENSG00000153406 | NMRAL1 | BRCA,CHOL,LUAD,PRAD,UCEC | BRCA | | | ENSG00000234949 | ENSG00000167272 | POP5 | BRCA,CHOL,LUAD,PRAD,UCEC | UCEC | | | ENSG00000234949 | ENSG00000170906 | NDUFA3 | BRCA,CHOL,LUAD,PRAD,UCEC | UCEC | | | ENSG00000234949 | ENSG00000172366 | MCRIP2 | BRCA,CHOL,LUAD,PRAD,UCEC | BRCA,UCEC | | | ENSG00000234949 | ENSG00000228300 | FAM174C | BRCA,CHOL,LUAD,PRAD,UCEC | BRCA,UCEC | | | ENSG00000234949 | ENSG00000267795 | SMIM22 | BRCA,LUAD,OV,PRAD,UCEC | BRCA,PRAD,UCEC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000234949 | ENST00000470375 | DDR2 | ENSG00000162733 | ENST00000367921 | -0.1795 | 460 | - | UCEC,PRAD,BRCA | | ENSG00000234949 | ENST00000470375 | DDR2 | ENSG00000162733 | ENST00000458105 | -0.2309 | 314 | - | UCEC,PRAD,BRCA | | ENSG00000234949 | ENST00000470375 | DDR2 | ENSG00000162733 | ENST00000433757 | -0.1082 | 291 | - | UCEC,PRAD,BRCA | | ENSG00000234949 | ENST00000452801 | DDR2 | ENSG00000162733 | ENST00000367921 | -0.1176 | 620 | - | UCEC,PRAD,BRCA | | ENSG00000234949 | ENST00000452801 | DDR2 | ENSG00000162733 | ENST00000458105 | -0.2562 | 1208 | - | UCEC,PRAD,BRCA | | ENSG00000234949 | ENST00000452801 | DDR2 | ENSG00000162733 | ENST00000433757 | -0.1182 | 699 | - | UCEC,PRAD,BRCA |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000234949.2 | ENST00000470375.1 | 68 | 336 | 539 | | ENSG00000234949.2 | ENST00000452801.1 | 88 | 541 | 275 |
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