 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SLC25A29,SUMF2,LRRC75B,COA3,MACC1,LSM5,MORN2,AP4M1,C1orf210,MRPS33,ABHD11,PLS1,RAB25,TNFRSF12A,CTF1,MMP15,EIF2AK1,IFT22,DHRS12,SEM1,NDUFA5,TMEM107,STYXL1,DYNC2LI1,GPALPP1,STMP1,MARCKSL1,IQCE,IMMP2L,COA1,FAM104B,RPA3,DENND6B,C12orf76,LRRC56,ICA1,TMEM139,MARVELD3,RBPMS,C14orf93,ASRGL1,NEK8,CBX3,MYL12B,CCDC24,RP11-523H20.5,ISYNA1,YAE1,SAP18,NDUFC1,MTIF3,TAX1BP3,MIEF2,KIAA0895,DYNLT1,IFT88,LYRM1,TMED4,GGCT,KIF12,TMEM248,SMAGP,ITGB8,GATAD1,TMEM125,TSPAN6,SPATA33,P4HTM,DBNDD1,INCA1,LLGL2,NUP42,ARMC10,EPS8L1,ABCD4,PRR36,ACYP1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000233834 | ENST00000439446 | exon_skip_44998 | chr10:110132304-110132400 | -12.91 | -0.1403 | ADD3 | ENST00000356080 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_64939 | chr11:112230207-112230230 | -5.56 | -0.7943 | PTS | ENST00000280362 | Frame-shift | | ENSG00000233834 | ENST00000439446 | exon_skip_296984 | chr18:58335477-58335537 | -13.11 | -0.2913 | NEDD4L | ENST00000400345 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_386291 | chr3:108050577-108050602 | -6.55 | -0.5955 | CD47 | ENST00000361309 | Frame-shift | | ENSG00000233834 | ENST00000439446 | exon_skip_423795 | chr4:55888887-55888932 | -7.90 | -0.2633 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_461111 | chr6:90544551-90544632 | -13.06 | -0.2141 | MAP3K7 | ENST00000369329 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_150188 | chr17:27643524-27643620 | -16.39 | -0.2075 | LGALS9 | ENST00000395473 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000233834 | ENST00000439446 | exon_skip_337919 | chr2:27445744-27445843 | -14.53 | -0.1614 | IFT172 | ENST00000260570 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_361434 | chr21:25997359-25997416 | -9.91 | -0.3197 | APP | ENST00000346798 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_376144 | chr3:100311832-100311877 | -6.71 | -0.2314 | TBC1D23 | ENST00000394144 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_382356 | chr3:37091466-37091538 | -5.88 | -0.2178 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000233834 | ENST00000439446 | exon_skip_445633 | chr5:151110626-151110644 | -8.18 | -0.8180 | ANXA6 | ENST00000354546 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000233834 | ENSG00000183742 | MACC1 | BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,OV,STAD,THCA,UCEC,UCS | CHOL | HNSC | | ENSG00000233834 | ENSG00000120756 | PLS1 | CESC,CESC,HNSC,HNSC,KICH,KICH,LUSC | | HNSC,HNSC | | ENSG00000233834 | ENSG00000000003 | TSPAN6 | CESC,CHOL,COAD,HNSC,KICH,UCEC | | HNSC | | ENSG00000233834 | ENSG00000003147 | ICA1 | CESC,CHOL,COAD,ESCA,HNSC,PAAD,READ,STAD,UCS | CHOL,READ | HNSC | | ENSG00000233834 | ENSG00000073350 | LLGL2 | CESC,CHOL,HNSC,KICH,KIRP,UCS | CHOL | | | ENSG00000233834 | ENSG00000106012 | IQCE | CESC,CHOL,DLBC,KICH,KIRP | CHOL | | | ENSG00000233834 | ENSG00000106077 | ABHD11 | CESC,CHOL,DLBC,KIRC,KIRP,UCS | CHOL | | | ENSG00000233834 | ENSG00000128581 | IFT22 | CESC,CHOL,DLBC,KICH,KIRP | CHOL | | | ENSG00000233834 | ENSG00000136883 | KIF12 | CESC,CHOL,ESCA,KICH,PAAD,UCS | CHOL | | | ENSG00000233834 | ENSG00000138036 | DYNC2LI1 | CESC,CHOL,COAD,KICH,KIRC,KIRP | CHOL | | | ENSG00000233834 | ENSG00000159239 | RP11-523H20.5 | CESC,CHOL,PAAD,READ,THCA,UCS | CHOL | | | ENSG00000233834 | ENSG00000161328 | LRRC56 | CESC,CHOL,DLBC,KICH,KIRP | CHOL | | | ENSG00000233834 | ENSG00000162174 | ASRGL1 | CESC,CHOL,ESCA,KICH,KIRP | CHOL | | | ENSG00000233834 | ENSG00000167523 | SPATA33 | CESC,CHOL,KIRP,READ,UCS | CHOL,READ | | | ENSG00000233834 | ENSG00000175130 | MARCKSL1 | CESC,CHOL,DLBC,ESCA,UCS | CHOL | | | ENSG00000233834 | ENSG00000178026 | LRRC75B | CESC,CHOL,KIRP,READ,UCS | READ | | | ENSG00000233834 | ENSG00000179029 | TMEM107 | CESC,CHOL,DLBC,KIRP,THCA | CHOL | | | ENSG00000233834 | ENSG00000179178 | TMEM125 | CESC,CHOL,HNSC,KICH,KIRP,UCS | CHOL | HNSC | | ENSG00000233834 | ENSG00000183248 | PRR36 | CESC,CHOL,ESCA,PAAD,UCS | CHOL | | | ENSG00000233834 | ENSG00000197119 | SLC25A29 | CESC,CHOL,DLBC,ESCA,PAAD,UCS | CHOL | | | ENSG00000233834 | ENSG00000205593 | DENND6B | CESC,CHOL,KIRP,READ,UCS | CHOL | | | ENSG00000233834 | ENSG00000003249 | DBNDD1 | CHOL,HNSC,KICH,THCA,UCS | CHOL | HNSC | | ENSG00000233834 | ENSG00000105655 | ISYNA1 | CHOL,DLBC,KICH,PAAD,THCA | CHOL | | | ENSG00000233834 | ENSG00000119640 | ACYP1 | CHOL,KIRP,PAAD,READ,UCS | CHOL | | | ENSG00000233834 | ENSG00000131037 | EPS8L1 | CHOL,HNSC,KICH,THCA,UCS | CHOL | HNSC | | ENSG00000233834 | ENSG00000132698 | RAB25 | CHOL,HNSC,KICH,THCA,UCS | CHOL | HNSC | | ENSG00000233834 | ENSG00000140832 | MARVELD3 | CHOL,KICH,KIRC,KIRP,UCS | CHOL | | | ENSG00000233834 | ENSG00000150281 | CTF1 | CHOL,KICH,KIRP,OV,THCA | CHOL | | | ENSG00000233834 | ENSG00000213977 | TAX1BP3 | CHOL,DLBC,KICH,KIRP,UCS | CHOL | | | ENSG00000233834 | ENSG00000221838 | AP4M1 | CHOL,DLBC,KIRP,THCA,UCS | CHOL | | | ENSG00000233834 | ENSG00000170545 | SMAGP | DLBC,HNSC,KICH,KIRP,UCS | | HNSC |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000233834.5 | ENST00000439058.4 | 71 | 97 | 312 | | ENSG00000233834.5 | ENST00000430859.1 | 52 | 586 | 428 | | ENSG00000233834.5 | ENST00000439446.1 | 81 | 735 | 490 |
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