|
||||||
|
lncRNA: ENSG00000233639 |
Summary for PANTR1 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000233639 | Gene symbol | PANTR1 |
| Gene name | POU3F3 adjacent non-coding transcript 1 | |
| HGNC | 49513 | |
| Entrez ID | 100506421 | |
| Gene type | processed_transcript | |
| Synonyms | LINC01158|PANTR1|02q12.1 | |
| UniProtAcc |
Top |
Structure and expression level for PANTR1 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
 |
| Differentially expressed gene analysis between cancer and normal samples. |
 |
| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000233639 | 1.900821e+03 | 2.218133e+00 | 4.484501e-01 | 4.946221e+00 | 7.570000e-07 | 6.380000e-06 | UP | GBM |
| ENSG00000233639 | 5.537919e+02 | -1.386474e+00 | 1.943662e-01 | -7.133312e+00 | 9.800000e-13 | 7.680000e-12 | DOWN | KICH |
| ENSG00000233639 | 3.369538e+01 | 6.640111e+00 | 9.046610e-01 | 7.339888e+00 | 2.140000e-13 | 1.920000e-12 | UP | UCEC |
| ENSG00000233639 | 2.781194e+02 | 5.798867e+00 | 1.701266e+00 | 3.408559e+00 | 6.530690e-04 | 8.443429e-03 | UP | PCPG |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000233639 | -6.079923e-01 | 2.634743e-10 | KICH | 2.869733e-09 |
Top |
lncRNA-Protein interaction for PANTR1 |
 |
| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000233639 | ENST00000458253 | LINC01158 | ENSG00000150316 | CWC15 | 10.25 | 92.6383 | Q9P013 | RBP | NA |
Top |
|
