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lncRNA: ENSG00000233527

Summary for ZNF529-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000233527
	Gene symbol	ZNF529-AS1
	Gene name	ZNF529 antisense RNA 1
	HGNC	51275
	Entrez ID	101927599
	Gene type	antisense
	Synonyms	ZNF529-AS1\|19q13.12
	UniProtAcc

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Structure and expression level for ZNF529-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000233527	2.118061e+02	1.117983e+00	2.559252e-01	4.368398e+00	1.250000e-05	7.810000e-05	UP	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000233527	4.200155e-01	1.430679e-04	ACC	2.007470e-03
ENSG00000233527	6.105561e-01	8.443196e-06	CHOL	6.961498e-05
ENSG00000233527	-4.686048e-01	3.632851e-06	KICH	8.793028e-06

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lncRNA-Protein interaction for ZNF529-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233527	ENST00000475219	ZNF529-AS1	ENSG00000146247	PHIP	69.22	91.9852	Q8WWQ0	Epi	NA
ENSG00000233527	ENST00000475219	ZNF529-AS1	ENSG00000124177	CHD6	52.32	95.7169	Q8TD26	Epi	NA
ENSG00000233527	ENST00000475219	ZNF529-AS1	ENSG00000272333	KMT2B	33.53	93.4327	Q9UMN6	TF,Epi	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000132780	NASP	65.91	92.4982	P49321	Epi	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000185658	BRWD1	58.2	92.3768	Q9NSI6	Epi	NA
ENSG00000233527	ENST00000592880	ZNF529-AS1	ENSG00000185658	BRWD1	53.21	93.6823	Q9NSI6	Epi	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000154832	CXXC1	38.33	90.1868	Q9P0U4	TF,Epi	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000084093	REST	44.29	93.3965	Q13127	TF,Epi	ChIP-seq

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233527	ENST00000475219	ZNF529-AS1	ENSG00000272333	KMT2B	33.53	93.2719	Q9UMN6	TF,Epi	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000084093	REST	44.29	93.363	Q13127	TF,Epi	ChIP-seq
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000167232	ZNF91	43.38	93.8819	Q05481	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000198521	ZNF43	41.09	91.9079	P17038	TF	NA
ENSG00000233527	ENST00000592880	ZNF529-AS1	ENSG00000167232	ZNF91	39.11	92.765	Q05481	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000198040	ZNF84	32.54	91.0766	P51523	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000124459	ZNF45	32.24	90.91	Q02386	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000186272	ZNF17	22.45	90.9091	P17021	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000105708	ZNF14	17.27	90.5908	P17017	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000168661	ZNF30	12.3	90.0687	P17039	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000197857	ZNF44	12.15	91.0646	P15621	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000175691	ZNF77	5.17	91.4075	Q15935	TF	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000256223	ZNF10	4.62	92.0269	P21506	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000004534	RBM6	59.57	91.0025	P78332	RBP	Predict
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000198000	NOL8	55.68	90.3479	Q76FK4	RBP	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000106344	RBM28	53.32	91.5847	Q9NW13	RBP	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000139746	RBM26	50.01	94.2377	Q5T8P6	RBP	NA
ENSG00000233527	ENST00000592880	ZNF529-AS1	ENSG00000139746	RBM26	46.59	90.5605	Q5T8P6	RBP	NA
ENSG00000233527	ENST00000494214	ZNF529-AS1	ENSG00000204356	NELFE	6.23	90.3659	P18615	RBP	NA
ENSG00000233527	ENST00000475219	ZNF529-AS1	ENSG00000134815	DHX34	53.93	90.4955	Q14147	RBP	NA

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lncRNA-DNA interaction for ZNF529-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARL16,VAMP1,UXT,EPOR,TCEA2,STRN4,SLC35D2,ARFIP2,CTF1,MFSD8,NUP43,KRT10,ABHD17A,IFT22,TMEM234,IFT52,CIRBP,PET100,DYNC2LI1,MZF1,ATP5MG,WDR83OS,QPCTL,SUGP2,PPP2R3B,FKRP,N4BP2L2,DMTF1,L3HYPDH,TDP2,CTU1,ACD,XAB2,LMBR1L,TRAPPC12,ULK3,SERTAD3,KMT2B,ZFP14,CENATAC,NPEPL1,WDR5B,SNRPA,ST7L,SAFB2,KCTD13,APTX,MSANTD2,TUBGCP6,CCDC14,FAM200A,OSER1,LZTFL1,ABITRAM,FAAP20,CLK4,C6orf136,COMMD7,NMNAT1,SURF2,ZBED5,EIF2B5,PMM1,PPIH,UBA2,TTC14,SLC2A11,COG4,SVBP,GKAP1,TAZ,SUGP1,SPG7,NAA80,FAM104B,C19orf44,DAXX,SIAH1,GTF2H5,SCYL3,OGT,RCCD1,CCNB1IP1,RAB4B,ZIK1,COX19,CLK2,UQCC2,ILKAP,LYRM4,MPLKIP,POLG2,DHX34,LYPLAL1,TUT4,RING1,SSU72,CHKB,CEP89,METTL17,UROD,TMEM39B,BBIP1,SNHG32,PAQR7,CBY1,WDR83,OSGEP,USF1,CLK1,MRRF,SAMD11,ITGB3BP,GABPB1,NASP,RABL2A,ANKRD39,RPAIN,OFD1,BABAM1,ACYP1,RBBP4,SLC25A29,RPS28,IFT172,FBXO17,CDKN2AIPNL,CFAP298,MBD5,DERL2,B3GALT6,DDX49,TTC21B,CAMKMT,PFDN6,LMAN2L,INO80E,NAPB,C3orf62,YJU2,ZADH2,APBA3,RHPN2,ZFP82,SETD5,ZFP62,C17orf97,ALKBH2,MEA1,RPL35,ZBED8,ORMDL1,ZNF45,MIIP,LPAR2,PARL,RPP38,FDX2,C18orf21,SH2D3A,DDOST,DONSON,AGER,MBD4,NKAPD1,AGO3,ORC2,PIGZ,SSBP2,C19orf12,PRPF38A,SPOUT1,SLC35F5,SRSF2,C1orf52,CUL9,SYMPK,TSEN54,FAM229B,LRRC37B,ZNF593,SUPT5H,ATG4B,SUPT20H,PAFAH1B3,CCDC191,NXF1,DCUN1D2,UBXN2A,CCER2,KIF9,UQCC1,NR2C2,PAN2,C2orf76,FAM229A,PFDN5,LRTOMT,FBXW9,GIGYF1,HMGN3,ZNF14,FAM193B,NDUFB1,TMCO6,NOL3,SLC25A28,STK25,XPO1,CZIB,METTL4,TMEM126B,GLS,ZFC3H1,PDRG1,KLHL17,ARHGAP33,MBTD1,DNASE1,SEPSECS,HEXD,COA6,IFT122,HDAC8,CASP6,VCPKMT,ANAPC11,SCNN1D,CCDC24,MRPS25,LYSMD1,CCDC12,EIF3K,PTRHD1,FAM204A,UQCRHL,POLM,ZNF69,KIF12,THOC7,ERCC5,SWT1,IQCC,TRIR,CASTOR3,ZNF30,OARD1,RTRAF,THADA,IFT57,FANCL,GLI4,PDE9A,DNAJC4,MRPL55,CCDC28B,DPY19L3,LENG8,MED7,COX6B1,PHKA2,C1orf159,PRR3,FAM98C,NICN1,IP6K2,PPOX,SPICE1,WDR53,POLR2C,PIBF1,AHI1,ZNF70,INO80D,MRPL20,SH3YL1,ASTE1,TMED4,BIVM,TIMM44,C20orf96,PHF7,HSCB,ARFGAP1,MIX23,CAPN10,RPL13A,GLMN,FAM111A,BANP,ACYP2,FAM136A,THOC1,LSM3,CCDC40,CTDSP1,ANKMY1,WDR59,CCDC59,TRNT1,NUTF2,GPN2,ACBD6,INTS11,HMGN2,ZMYM5,TAMM41,SPACA9,MZT1,ZNF44,CDK20,RPA2,ALKBH6,FAAP24,LTO1,PIDD1,ANAPC13,BCLAF3,TBCA,TPT1,CWC15,ZCCHC9,CCDC106,NFYC,EMD,IFT80,CEP83,NAA10,FBXO44,NELFE,UBN2,METTL23,EXD3,GLT8D1,NFKBID,C17orf75,LRIG2,P4HTM,PARP2,PATZ1,ABHD18,PCED1A,TUSC2,MVB12A,ELP5,TBCB,DYNLT2,MRPS15,BRF1,CEP70,ACIN1,ZC3H8,ENOSF1,RAB2B,ANKRD49,PAXBP1,DNAJC19,LEMD2,PGBD1,PQBP1,LENG1,FNTA,ZNF48,TADA2A,FNBP4,TGDS,CCHCR1,PRMT7,LRRC56,INPP5E,PHF11,COP1,SLC35C2,IL11RA,CLIC1,NEK8,MBD3,MARK4,SERF2,NVL,RPS10,UNC50,COMMD1,FIZ1,NBPF15,TRPT1,MYNN,TATDN2,SUMO2,LTB4R,MRPL36,KIFC2,LRP3,HDAC1,MRPS9,HEMK1,UPF3B,LINS1,TMEM218,IFT20,MED29,PYURF,FRS3,NDUFAF5,C2orf68,FBXL8,GNRH1,SPC24,AP4M1,PSMG2,NDUFAF7,RBM6,DRAM2,TRMT13,ZNF862,KHDC1,AK2,IDUA,SREK1IP1,POP5,RNF115,SYF2,MYL5,CENPL,RYK,EPM2AIP1,UCKL1,FKBP3,WDR27,HSPBP1,EME2,NAIF1,B9D1,PPCDC,LRFN1,KHDC4,DCAF15,PLXNB1,TFDP2,PDCD2L,EP400P1,USF2,PNISR,RP9,SFPQ,TRIOBP,ACAP3,CEPT1,USP45,CARD8,EMC10,ENKD1,ATP5IF1,ZNF10,ATAT1,TAF11,MORN2,DUT,STMN1,EXO5,ZBTB8OS,PBX2,TRMU,MYPOP,ANGEL2,BICRA,POMT1,NFKBIB,ATXN7L2,SEM1,DALRD3,STMP1,POC5,CHTF18,CDPF1,MRPL47,MSTO1,ODAD4,POMGNT1,UBE2J2,TJAP1,NAT14,TAF1D,KATNBL1,MKS1,MYL12B,C1orf35,CCDC174,LSM10,MTIF3,CDK5RAP1,SPIN3,NDUFA7,MARCHF9,PIGC,COX11,SLX4IP,NPRL2,ZCWPW1,SUGT1,KLHDC4,KLHDC1,CCNL2,TTC30B,DCAKD,EFCAB7,FBXO46,MYCBP,DMPK,CCDC115,RNPC3,CLK3,C14orf28,ANKRD10,INCA1,LRCH3,TIMM9,CHTOP,KANSL3,LSM5,DDTL,BCAT2,SIKE1,SEC61B,MC1R,TYK2,C1orf174,COQ4,KYAT1,COPS9,CCNT2,OSBPL7,PTCD3,STX10,WDR62,CENPQ,KAT2A,PHLDB3,ZNF91,CHD6,BRWD1,LRRC23,CSTF3,RBM26,PLA2G6,TMEM86B,ZBTB3,SAP18,RBM25,C1orf131,CEBPZOS,RHPN1,ENDOV,BBS10,ZFP30,DPY30,MLH3,GLB1L,PPIE,RBM43,SETD6,KANSL1L,POLI,ELP6,PRPF39,ZNF34,TMEM258,ERMARD,MRPL22,KIAA0753,TRIM45,NDOR1,GEMIN7,DCAF17,GEMIN6,MIB2,WHRN,EPC1,ZNF22,MZT2B,PHF1,PABIR2,CETN2,ZNF717,CEP44,SCRN2,HSF4,PROSER3,ARGLU1,ANKS3,NOXA1,YJEFN3,NEPRO,GON7,DDA1,UCK1,SMDT1,CCNL1,RGL3,ANKRD54,ANKRA2,ZNF93,C2orf49,VMAC,COX4I1,BCL2L12,MEAF6,SCMH1,TMEM60,RBM45,HSPBAP1,YAE1,DYRK4,CENPS,OGG1,RPS6,POLR1C,NR2C2AP,PSMG4,METTL6,TIA1,MED4,HOOK2,ZNF83,TMUB2,ZNF3,CIAO2B,UBA3,ZNF8,IFI27L1,DNMT3A,ABCD4,AAMDC,DMWD,PSMG3,ERCC3,SAYSD1,C19orf25,NEIL1,DTX3,ZMYND19,MTG2,RNF215,ERCC1,GIN1,TLE5,NAT9,LIPT1,ABHD14A,CRAMP1,LUC7L,LSM2,F11R,ZNF43,TMEM25,COA5,BRD8,MICOS10,CENPJ,BBS4,C14orf93,LRSAM1,DPH7,EIF1B,TRA2A,NSMCE4A,CKLF,DPH5,MRPL43,REV1,HINFP,PHOSPHO2,XPA,NR2C1,APBB3,CYTH2,C8orf76,EIF3I,NOP53,HEBP2,WBP1,TEPSIN,NOL8,TRIT1,IMMP1L,CFAP44,AGAP6,WRAP73,GABPB2,BOLA3,MPHOSPH10,CFDP1,RBM39,ODF2L,TADA1,SLC25A27,PGS1,IRF3,TMEM267,SERGEF,NDUFA13,PYGO2,NRF1,TMEM44,DCTN3,RRNAD1,ZXDC,IQCB1,SNRPD2,KAT8,ZSWIM7,TRIM39,PIGL,NEK3,KCTD6,ERH,RP11-523H20.5,KIAA0895L,RINL,ARV1,NDUFAF6,ZNF77,ATAD3B,SAMD10,GPATCH2,MUTYH,RBM28,ZNF74,BCL7C,BANF1,OBSL1,DCAF8,PHYKPL,TMEM259,POFUT2,CACTIN,FRA10AC1,ZBTB5,RUFY3,LIN37,ZFP69,NUP42,IFT27,RECQL5,PAN3,ZNHIT1,NARF,PMF1,ZC3HC1,BUD31,NUMBL,ASB6,AKT2,SS18L2,SWSAP1,TBC1D17,RFXANK,SUPT7L,NT5C3B,UBE2D4,MED31,CENPT,OSGEPL1,S100PBP,SHC2,CFAP410,URI1,POGZ,SIRT2,GTPBP3,ANAPC7,C1orf50,RBMX,RBM4B,TSC2,DTWD1,DNAJB2,EXOG,MRPS31,CCDC102A,BEND5,C21orf58,TAF1C,UFD1,SERPINB6,WDSUB1,MAP3K12,TMEM143,ORC4,TEFM,ATP5MJ,FUBP1,RABAC1,SLC38A6,PRIMPOL,UBL5,RPS8,RPS11,CNKSR1,CXXC1,EZH1,MRNIP,ZNF71,ELMOD3,DDX17,E2F5,GSTM2,ING4,MAP3K13,HAUS5,SENP7,MTRF1,CHFR,RAD52,ARVCF,THYN1,LIAS,PGLS,FBXL12,CEP290,IFT46,CDAN1,TMEM107,WSB1,GPALPP1,GTF2A2,STK19,LRRC29,PHIP,POLL,FAM228B,WASHC1,TIGD1,KLC1,GPS2,TRIM52,NDUFC1,RPL36A,COA8,PCBP4,THAP3,NOL12,MTFR1L,SPIN2B,CRYZL1,CLASRP,TTC13,STK36,ANKRD16,TTC32,TM2D1,ZMAT1,GOLGA8B,COMMD6,SPATA33,ACP6,RPS24,CBR4,ZNF18,TIMM29,EIF2D,TMA7,GOLGA8A,ITGAE,CYP2R1,PAM16,H2AC6,TGIF1,SETD4,TPRKB,SPATA24,CARD19,RBM48,KLHDC3,AARSD1,DUSP28,RBM5,BOLA1,SMIM4,NKTR,YPEL3,ZFP28,ZCCHC7,TTC9C,ZNF17,TTLL3,CRBN,RPP40,ZNF84,SLC35B3,ADRA2C,RXRB,PARP6,TUBD1,C19orf18,GNL1,PDCD6,WDR33,RNF5,NMRK1,C17orf80,TRA2B,TFB1M,PIAS2,CRIPT,MRPS14,TSC1,SH3GLB2,SIRT6,DXO,HSPB11,USPL1,LIG1,CCDC57,RABL2B,TRAPPC2,SIRT7,MRFAP1L1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DCAF8,ANKRD39,E2F5,C14orf93,RP9,CCDC174,GTF2H4,MSTO1,LRRC23,PDCD2L,XPO1,KIZ,OSGEPL1,ZMAT1,DMWD,PGS1,HAUS5,FAM204A,DONSON,DMPK,ORC2,DGCR8,REST,ZNF3,METTL6,PGLS,EIF2D,PBX2,EID2B,ZNF70,ACP6,GTF2A2,OXLD1,TJAP1,LPAR2,CFAP36,LMAN2L,TGIF1,STX16,PARK7,VARS2,KIAA0355,HEMK1,EP400NL,MRPS31,KANSL1L,E4F1,KLHDC4,BCAT2,C19orf44,PARP2,DYRK4,PDCD6,C9orf114,ZNF14,ING4,RGL3,SETD6,MYNN,SNRPC,CRYZL1,MPLKIP,C17orf80,CEP89,NDUFB1,ENOSF1,SHFM1,FBXW9,MED4,TUSC2,SRP14,ZFP82,MIIP,C14orf79,TMCO6,CDC34,SIN3B,MZF1,LSM2,RAD9A,CENPJ,C3orf62,SLC25A14,BANF1,FAM122B,QTRT1,C17orf75,RPSA,MYL5,FBXO46,INO80E,KIAA0907,TMEM44,C14orf2,CFDP1,HSCB,SETD4,NEK3,ABHD18,PPCDC,ACCS,FAIM,CHFR,C2orf68,SPICE1,ELAC1,SAT2,NDUFS5,WSB1,PDE9A,CCDC130,MAGEF1,ANGEL2,SYMPK,RPA2,EXO5,ARIH2,ABCD4,ZNF48,RPL35,FAM111A,CYTH2,HDAC1,MFSD8,TRIOBP,ING5,NR2C2AP,CCNL1,S100PBP,TRIT1,NUPL2,RCAN3,NIT2,AARSD1,SENP5,ARIH2OS,NUP85,ERCC3,ZMYND19,MED28,ODF2,AP4B1,MDM4,CIRBP,TAZ

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ZNF529-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SDHA,PFKM,LAP3,ACO2,EIF4G1,NOMO2,ITPK1,UHRF1BP1L

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000233527	ENST00000494214	exon_skip_111863	chr14:23565815-23565892	-14.94	-0.2075	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_41841	chr10:68756272-68756483	-18.67	-0.1353	CCAR1	ENST00000265872	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_66482	chr11:126274926-126275021	-12.76	-0.2502	FOXRED1	ENST00000263578	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_114365	chr14:74290026-74290118	-13.01	-0.1531	ABCD4	ENST00000356924	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_290158	chr17:42953723-42953778	-6.69	-0.5575	AARSD1	ENST00000427569	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_324294	chr2:27774423-27774530	-11.33	-0.1382	MRPL33	ENST00000296102	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_370525	chr22:50250426-50250523	-13.25	-0.1395	HDAC10	ENST00000216271	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_377198	chr3:123130479-123130616	-13.72	-0.1236	PDIA5	ENST00000316218	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_382458	chr3:38131595-38131638	-9.86	-0.7043	ACAA1	ENST00000333167	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_111870	chr14:23566561-23566686	-17.18	-0.1790	AP1G2	ENST00000397120	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_319223	chr19:43526200-43526349	-13.68	-0.1668	ETHE1	ENST00000292147	Frame-shift
ENSG00000233527	ENST00000494214	exon_skip_106783	chr14:55673171-55673255	-4.79	-0.2395	KTN1	ENST00000395314	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for ZNF529-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000233527	ENSG00000064490	RFXANK	ACC,CHOL,GBM,LGG,MESO,TGCT,THCA,THYM	GBM
ENSG00000233527	ENSG00000099385	BCL7C	ACC,CHOL,GBM,KICH,KIRP,MESO,PCPG,TGCT,THCA	GBM
ENSG00000233527	ENSG00000104915	STX10	ACC,CHOL,GBM,KIRC,KIRP,LGG,PRAD,THCA,THYM	GBM
ENSG00000233527	ENSG00000106400	ZNHIT1	ACC,GBM,KIRP,READ,THCA,THYM	GBM
ENSG00000233527	ENSG00000106803	SEC61B	ACC,GBM,LGG,READ,THCA,THYM	GBM
ENSG00000233527	ENSG00000123349	PFDN5	ACC,CHOL,GBM,KICH,PAAD,PCPG,THCA,THYM,UVM	GBM
ENSG00000233527	ENSG00000124614	RPS10	ACC,CHOL,GBM,KICH,READ,UVM	GBM
ENSG00000233527	ENSG00000125743	SNRPD2	ACC,CHOL,GBM,LGG,MESO,PRAD,THCA,THYM	GBM
ENSG00000233527	ENSG00000130313	PGLS	ACC,CHOL,GBM,KIRC,MESO,PCPG,THCA,THYM	GBM
ENSG00000233527	ENSG00000136942	RPL35	ACC,GBM,KIRC,READ,THCA,UVM	GBM
ENSG00000233527	ENSG00000137154	RPS6	ACC,GBM,THCA,THYM,UVM	GBM
ENSG00000233527	ENSG00000141971	MVB12A	ACC,CHOL,GBM,KICH,LAML,MESO,TGCT,THCA,THYM	GBM
ENSG00000233527	ENSG00000142534	RPS11	ACC,CHOL,GBM,KICH,LGG,MESO,PCPG,TGCT,THCA,THYM	GBM
ENSG00000233527	ENSG00000142541	RPL13A	ACC,CHOL,GBM,PCPG,UVM	GBM
ENSG00000233527	ENSG00000142937	RPS8	ACC,GBM,KICH,THYM,UVM	GBM
ENSG00000233527	ENSG00000144034	TPRKB	ACC,CHOL,GBM,KICH,KIRP,PRAD,SKCM,TGCT,THCA,THYM,UVM	GBM
ENSG00000233527	ENSG00000167272	POP5	ACC,CHOL,GBM,KICH,KIRP,PAAD,TGCT,THCA,UVM	GBM
ENSG00000233527	ENSG00000184162	NR2C2AP	ACC,CHOL,GBM,KIRC,KIRP,LGG,MESO,PRAD,READ,THCA	GBM
ENSG00000233527	ENSG00000189046	ALKBH2	ACC,GBM,KICH,LAML,TGCT,THCA	GBM
ENSG00000233527	ENSG00000198258	UBL5	ACC,BLCA,CHOL,GBM,KIRP,LGG,MESO,PRAD,READ,TGCT,THCA,THYM	GBM
ENSG00000233527	ENSG00000204387	SNHG32	ACC,CHOL,ESCA,GBM,LAML,PAAD,THCA,THYM,UVM	GBM
ENSG00000233527	ENSG00000233927	RPS28	ACC,CHOL,GBM,MESO,THYM	GBM
ENSG00000233527	ENSG00000196981	WDR5B	BLCA,CHOL,GBM,KIRP,LAML,LUAD,LUSC,PAAD,READ,SKCM,TGCT,UCS,UVM	GBM
ENSG00000233527	ENSG00000269190	FBXO17	BRCA,CHOL,GBM,KICH,LGG,LUSC,SARC,TGCT,UCEC,UCS,UVM	GBM
ENSG00000233527	ENSG00000168273	SMIM4	CESC,DLBC,GBM,KICH,LGG,LUAD,MESO,PRAD,READ,THCA	GBM
ENSG00000233527	ENSG00000031691	CENPQ	CHOL,GBM,KICH,READ,UVM	GBM
ENSG00000233527	ENSG00000084623	EIF3I	CHOL,GBM,KICH,LGG,THCA	GBM
ENSG00000233527	ENSG00000100209	HSCB	CHOL,GBM,KICH,KIRP,THCA,UVM	GBM
ENSG00000233527	ENSG00000100632	ERH	CHOL,GBM,KIRP,PRAD,THCA	GBM
ENSG00000233527	ENSG00000106245	BUD31	CHOL,GBM,KIRP,LGG,THCA	GBM
ENSG00000233527	ENSG00000120334	CENPL	CHOL,GBM,LGG,LUAD,READ	GBM
ENSG00000233527	ENSG00000124570	SERPINB6	CHOL,GBM,KICH,LGG,UVM	GBM
ENSG00000233527	ENSG00000126756	UXT	CHOL,GBM,MESO,READ,THYM	GBM
ENSG00000233527	ENSG00000126790	L3HYPDH	CHOL,GBM,KICH,LAML,LGG,LUAD,PRAD,THCA	GBM
ENSG00000233527	ENSG00000131944	FAAP24	CHOL,DLBC,ESCA,GBM,KIRC,LUAD,LUSC,OV,READ,SARC,UCS	GBM
ENSG00000233527	ENSG00000133112	TPT1	CHOL,GBM,READ,THYM,UVM	GBM
ENSG00000233527	ENSG00000134825	TMEM258	CHOL,GBM,LGG,THCA,THYM	GBM
ENSG00000233527	ENSG00000135211	TMEM60	CHOL,GBM,KIRP,LGG,PAAD,READ,THCA,THYM	GBM
ENSG00000233527	ENSG00000135845	PIGC	CHOL,GBM,KICH,LGG,LUSC,TGCT	GBM
ENSG00000233527	ENSG00000138794	CASP6	CHOL,GBM,KIRP,LAML,LGG	GBM
ENSG00000233527	ENSG00000139974	SLC38A6	CHOL,GBM,LUAD,PRAD,THYM	GBM
ENSG00000233527	ENSG00000140264	SERF2	CHOL,GBM,MESO,PCPG,PRAD,THCA,THYM	GBM
ENSG00000233527	ENSG00000142856	ITGB3BP	CHOL,GBM,KICH,KIRP,LGG,LUAD,THYM,UVM	GBM
ENSG00000233527	ENSG00000149743	TRPT1	CHOL,GBM,KIRP,PAAD,TGCT,THCA,THYM	GBM
ENSG00000233527	ENSG00000150433	TMEM218	CHOL,GBM,KICH,KIRP,LGG,UVM	GBM
ENSG00000233527	ENSG00000156171	DRAM2	CHOL,GBM,KICH,LGG,UVM	GBM
ENSG00000233527	ENSG00000163785	RYK	CHOL,GBM,KICH,LUAD,UVM	GBM
ENSG00000233527	ENSG00000164306	PRIMPOL	CHOL,GBM,KICH,KIRP,LGG	GBM
ENSG00000233527	ENSG00000167565	SERTAD3	CHOL,GBM,LGG,READ,UCEC,UCS	GBM
ENSG00000233527	ENSG00000171421	MRPL36	CHOL,GBM,KICH,MESO,THCA	GBM
ENSG00000233527	ENSG00000171960	PPIH	CHOL,DLBC,GBM,KICH,KIRP,LGG,MESO,PCPG,PRAD,THCA,THYM,UVM	GBM
ENSG00000233527	ENSG00000172171	TEFM	CHOL,DLBC,GBM,KICH,LAML,LUAD,PAAD	GBM
ENSG00000233527	ENSG00000175334	BANF1	CHOL,GBM,KIRP,THCA,THYM	GBM
ENSG00000233527	ENSG00000186395	KRT10	CHOL,DLBC,GBM,KICH,KIRP,LGG,MESO,PAAD,PRAD,THCA	GBM
ENSG00000233527	ENSG00000188243	COMMD6	CHOL,GBM,KICH,MESO,READ,SKCM,THCA,UVM	GBM
ENSG00000233527	ENSG00000198830	HMGN2	CHOL,GBM,KICH,LGG,UVM	GBM
ENSG00000233527	ENSG00000213719	CLIC1	CHOL,GBM,KICH,LGG,READ	GBM
ENSG00000233527	ENSG00000214114	MYCBP	CHOL,GBM,KICH,KIRP,LGG	GBM
ENSG00000233527	ENSG00000217555	CKLF	CHOL,GBM,KICH,LGG,THYM	GBM
ENSG00000233527	ENSG00000241127	YAE1	CHOL,GBM,KICH,KIRP,LAML,SKCM,THCA,THYM	GBM
ENSG00000233527	ENSG00000243317	STMP1	CHOL,GBM,KICH,KIRP,LGG,THYM,UVM	GBM
ENSG00000233527	ENSG00000244038	DDOST	CHOL,GBM,KICH,LGG,MESO	GBM
ENSG00000233527	ENSG00000051620	HEBP2	DLBC,GBM,KICH,KIRP,LGG,READ,THCA,THYM,UVM	GBM
ENSG00000233527	ENSG00000233954	UQCRHL	DLBC,GBM,LAML,LGG,MESO,PRAD	GBM
ENSG00000233527	ENSG00000004455	AK2	GBM,KICH,LGG,MESO,UVM	GBM
ENSG00000233527	ENSG00000088451	TGDS	GBM,KICH,LAML,READ,UVM	GBM
ENSG00000233527	ENSG00000117543	DPH5	GBM,KICH,LAML,LGG,UVM	GBM
ENSG00000233527	ENSG00000131732	ZCCHC9	GBM,KICH,KIRP,LGG,UVM	GBM
ENSG00000233527	ENSG00000145337	PYURF	GBM,MESO,THCA,THYM,UVM	GBM
ENSG00000233527	ENSG00000160124	MIX23	GBM,KIRP,PRAD,THCA,UVM	GBM
ENSG00000233527	ENSG00000170270	GON7	GBM,KICH,LGG,PAAD,THYM,UVM	GBM

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000233527	ENSG00000105708	ZNF14	ENSG00000132716	DCAF8	5	CHOL,ESCA,KICH,LAML,STAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000132716	DCAF8	7	CHOL,KIRC,KIRP,LAML,LUSC,PAAD,TGCT
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000132716	DCAF8	5	CHOL,ESCA,KIRP,LAML,STAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000132716	DCAF8	6	CHOL,ESCA,KICH,LAML,PAAD,STAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000132716	DCAF8	6	CHOL,ESCA,KIRP,LAML,PAAD,STAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000132716	DCAF8	7	ESCA,KIRC,KIRP,LAML,PAAD,STAD,THCA
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000213780	GTF2H4	5	CHOL,KIRP,LAML,LGG,PAAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000213780	GTF2H4	5	ACC,CHOL,LAML,LGG,PAAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000126249	PDCD2L	6	BLCA,CHOL,LAML,LGG,LUSC,UCS
ENSG00000233527	ENSG00000105708	ZNF14	ENSG00000128694	OSGEPL1	5	CHOL,GBM,KICH,LAML,LUAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000166432	ZMAT1	5	KIRC,KIRP,LAML,PAAD,THCA
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000249115	HAUS5	12	BLCA,CESC,CHOL,ESCA,KIRC,LAML,LGG,LUAD,LUSC,MESO,TGCT,UCS
ENSG00000233527	ENSG00000272333	KMT2B	ENSG00000249115	HAUS5	9	ACC,BLCA,BRCA,CESC,ESCA,LGG,LUSC,OV,PAAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000104936	DMPK	6	CHOL,DLBC,KIRC,KIRP,LGG,TGCT
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000128191	DGCR8	5	CHOL,KIRP,LGG,PAAD,TGCT
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000166526	ZNF3	5	BLCA,CHOL,KIRC,KIRP,LAML
ENSG00000233527	ENSG00000198521	ZNF43	ENSG00000166526	ZNF3	5	BLCA,CHOL,KIRC,KIRP,LAML
ENSG00000233527	ENSG00000105708	ZNF14	ENSG00000206562	METTL6	5	CHOL,GBM,KICH,LAML,LUAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000176401	EID2B	8	CESC,KIRC,LAML,LUSC,PAAD,SKCM,TGCT,UCS
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000162836	ACP6	5	ESCA,KICH,KIRC,LAML,LGG
ENSG00000233527	ENSG00000167232	ZNF91	ENSG00000124222	STX16	5	CHOL,ESCA,KIRP,LUAD,PAAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000124222	STX16	5	CHOL,ESCA,KIRP,LUAD,PAAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000124222	STX16	5	ESCA,KIRP,LUAD,PAAD,THCA
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000166398	GARRE1	6	BLCA,CHOL,ESCA,LGG,LUSC,UCS
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000166398	GARRE1	5	ACC,CHOL,ESCA,LGG,STAD
ENSG00000233527	ENSG00000272333	KMT2B	ENSG00000166398	GARRE1	5	ACC,BLCA,ESCA,LGG,LUSC
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000114735	HEMK1	6	KIRC,KIRP,LAML,LUAD,PAAD,THCA
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000144445	KANSL1L	5	CHOL,ESCA,LAML,LGG,LUAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000144445	KANSL1L	5	CHOL,ESCA,KICH,LAML,LUAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000105072	C19orf44	6	CHOL,KIRP,LAML,LGG,PAAD,TGCT
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000105072	C19orf44	6	CHOL,ESCA,KIRP,LAML,LGG,PAAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000105072	C19orf44	5	CHOL,KICH,LAML,LGG,PAAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000105072	C19orf44	5	CHOL,ESCA,KIRP,LAML,PAAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000105072	C19orf44	5	ESCA,KIRP,LAML,PAAD,THCA
ENSG00000233527	ENSG00000167232	ZNF91	ENSG00000105708	ZNF14	6	CHOL,ESCA,LAML,LUAD,PAAD,SKCM
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000105708	ZNF14	5	BLCA,CHOL,LAML,PAAD,SKCM
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000105708	ZNF14	6	CHOL,ESCA,LAML,LUAD,PAAD,STAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000105708	ZNF14	8	CHOL,ESCA,KICH,LAML,LUAD,PAAD,SKCM,STAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000105708	ZNF14	8	BLCA,CHOL,ESCA,LAML,LUAD,PAAD,SKCM,STAD
ENSG00000233527	ENSG00000198521	ZNF43	ENSG00000105708	ZNF14	7	BLCA,CHOL,GBM,LAML,LUAD,SKCM,STAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000105708	ZNF14	7	ESCA,KICH,LAML,LUAD,PAAD,SKCM,STAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000205517	RGL3	5	CHOL,ESCA,KIRC,KIRP,PAAD
ENSG00000233527	ENSG00000105708	ZNF14	ENSG00000085274	MYNN	5	CHOL,GBM,KICH,LAML,LUAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000121289	CEP89	9	BLCA,CESC,LAML,LGG,LUAD,LUSC,MESO,PAAD,UCS
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000121289	CEP89	6	CHOL,ESCA,LAML,LGG,PAAD,STAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000121289	CEP89	5	CHOL,KIRP,LAML,PAAD,STAD
ENSG00000233527	ENSG00000272333	KMT2B	ENSG00000121289	CEP89	9	ACC,BLCA,BRCA,CESC,ESCA,LGG,LUSC,OV,PAAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000132199	ENOSF1	5	CHOL,KICH,LAML,LUAD,PAAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000132199	ENOSF1	5	CHOL,KIRP,LAML,LUAD,PAAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000132199	ENOSF1	7	BRCA,KIRC,KIRP,LAML,LUAD,PAAD,THCA
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000099326	MZF1	6	CHOL,KIRP,LGG,PAAD,SKCM,TGCT
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000099326	MZF1	5	CHOL,ESCA,KIRP,LGG,PAAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000099326	MZF1	6	CHOL,KICH,KIRP,LGG,PAAD,SKCM
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000099326	MZF1	5	CHOL,ESCA,KIRP,PAAD,SKCM
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000099326	MZF1	6	KICH,KIRC,KIRP,PAAD,SKCM,THCA
ENSG00000233527	ENSG00000167232	ZNF91	ENSG00000132680	KHDC4	6	CHOL,ESCA,KIRP,LAML,LUAD,SKCM
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000132680	KHDC4	6	CHOL,KIRC,KIRP,LAML,LUSC,SKCM
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000132680	KHDC4	7	CHOL,ESCA,KICH,KIRP,LAML,LUAD,SKCM
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000132680	KHDC4	6	CHOL,ESCA,KIRP,LAML,LUAD,SKCM
ENSG00000233527	ENSG00000198521	ZNF43	ENSG00000132680	KHDC4	5	KIRC,KIRP,LAML,LUAD,SKCM
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000132680	KHDC4	7	BRCA,ESCA,KIRC,KIRP,LAML,LUAD,SKCM
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000185917	SETD4	7	BLCA,CHOL,KIRC,KIRP,LAML,PAAD,SKCM
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000185917	SETD4	6	BLCA,CHOL,KIRP,LAML,PAAD,SKCM
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000185917	SETD4	6	BRCA,KIRC,KIRP,LAML,SKCM,THCA
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000164074	ABHD18	5	ESCA,KIRC,KIRP,LAML,LUAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000164074	ABHD18	5	ESCA,KIRC,KIRP,LAML,LUAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000168887	C2orf68	6	BLCA,CHOL,KIRC,KIRP,LAML,LUSC
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000168887	C2orf68	5	BLCA,CHOL,KIRP,LAML,SKCM
ENSG00000233527	ENSG00000198521	ZNF43	ENSG00000168887	C2orf68	5	BLCA,KIRP,LAML,SKCM,STAD
ENSG00000233527	ENSG00000167232	ZNF91	ENSG00000164073	MFSD8	5	ESCA,KIRP,LAML,LUAD,PAAD
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000164073	MFSD8	5	ESCA,KIRP,LAML,LUAD,PAAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000164073	MFSD8	5	ESCA,KIRP,LAML,LUAD,PAAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000164073	MFSD8	5	ESCA,KIRP,LAML,LUAD,PAAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000164073	MFSD8	5	ESCA,KIRP,LAML,LUAD,PAAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000168395	ING5	5	CHOL,KICH,KIRC,KIRP,PAAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000116497	S100PBP	5	CHOL,KIRC,KIRP,LAML,LGG
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000116497	S100PBP	5	CHOL,KIRP,LAML,LGG,LUAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000116497	S100PBP	5	CHOL,KICH,LAML,LGG,LUAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000116497	S100PBP	5	CHOL,ESCA,KIRP,LAML,LUAD
ENSG00000233527	ENSG00000198521	ZNF43	ENSG00000116497	S100PBP	5	CHOL,KIRC,KIRP,LAML,LUAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000116497	S100PBP	5	ESCA,KIRC,KIRP,LAML,LUAD
ENSG00000233527	ENSG00000105708	ZNF14	ENSG00000136243	NUP42	5	BLCA,CHOL,GBM,PAAD,SKCM
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000136243	NUP42	6	BLCA,CHOL,KIRC,KIRP,PAAD,SKCM
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000136243	NUP42	5	BLCA,CHOL,KIRP,PAAD,SKCM
ENSG00000233527	ENSG00000198521	ZNF43	ENSG00000136243	NUP42	5	BLCA,GBM,KIRC,KIRP,SKCM
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000136243	NUP42	5	KIRC,KIRP,PAAD,SKCM,THCA
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000266967	AARSD1	5	CHOL,KIRC,KIRP,LAML,PAAD
ENSG00000233527	ENSG00000167232	ZNF91	ENSG00000198625	MDM4	5	CHOL,ESCA,KIRP,LUAD,SKCM
ENSG00000233527	ENSG00000105708	ZNF14	ENSG00000198625	MDM4	6	CHOL,ESCA,KICH,LUAD,SKCM,STAD
ENSG00000233527	ENSG00000168661	ZNF30	ENSG00000198625	MDM4	5	CHOL,KIRC,KIRP,SKCM,TGCT
ENSG00000233527	ENSG00000186272	ZNF17	ENSG00000198625	MDM4	5	CHOL,ESCA,KIRP,LUAD,STAD
ENSG00000233527	ENSG00000197857	ZNF44	ENSG00000198625	MDM4	7	CHOL,ESCA,KICH,KIRP,LUAD,SKCM,STAD
ENSG00000233527	ENSG00000198040	ZNF84	ENSG00000198625	MDM4	6	CHOL,ESCA,KIRP,LUAD,SKCM,STAD
ENSG00000233527	ENSG00000198521	ZNF43	ENSG00000198625	MDM4	5	KIRC,KIRP,LUAD,SKCM,STAD
ENSG00000233527	ENSG00000256223	ZNF10	ENSG00000198625	MDM4	8	BRCA,ESCA,KIRC,KIRP,LUAD,SKCM,STAD,THCA

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000233527	ENST00000475219	PFKM	ENSG00000152556	ENST00000547066	-0.1650	221	-	GBM
ENSG00000233527	ENST00000475219	ACO2	ENSG00000100412	ENST00000216254	-0.1682	1	-	GBM
ENSG00000233527	ENST00000475219	ACO2	ENSG00000100412	ENST00000396512	-0.1682	1	-	GBM
ENSG00000233527	ENST00000475219	NOMO2	ENSG00000185164	ENST00000381474	-1.2900	321	-	GBM
ENSG00000233527	ENST00000475219	NOMO2	ENSG00000185164	ENST00000621364	-1.0033	128	-	GBM
ENSG00000233527	ENST00000475219	NOMO2	ENSG00000185164	ENST00000543392	-1.2900	328	-	GBM
ENSG00000233527	ENST00000448373	PFKM	ENSG00000152556	ENST00000547066	-0.2405	640	-	GBM
ENSG00000233527	ENST00000448373	PFKM	ENSG00000152556	ENST00000552989	-0.1029	105	-	GBM
ENSG00000233527	ENST00000448373	NOMO2	ENSG00000185164	ENST00000381474	-0.4550	476	-	GBM
ENSG00000233527	ENST00000448373	NOMO2	ENSG00000185164	ENST00000621364	-0.3452	238	-	GBM
ENSG00000233527	ENST00000448373	NOMO2	ENSG00000185164	ENST00000543392	-0.4943	654	-	GBM
ENSG00000233527	ENST00000448373	NOMO2	ENSG00000185164	ENST00000567831	-0.1112	1	-	GBM
ENSG00000233527	ENST00000592880	PFKM	ENSG00000152556	ENST00000547066	-0.1064	36	-	GBM
ENSG00000233527	ENST00000592880	PFKM	ENSG00000152556	ENST00000552989	-0.1279	233	-	GBM
ENSG00000233527	ENST00000592880	ACO2	ENSG00000100412	ENST00000216254	-0.1159	1	-	GBM
ENSG00000233527	ENST00000592880	ACO2	ENSG00000100412	ENST00000396512	-0.1159	1	-	GBM
ENSG00000233527	ENST00000592880	NOMO2	ENSG00000185164	ENST00000381474	-0.1829	108	-	GBM
ENSG00000233527	ENST00000592880	NOMO2	ENSG00000185164	ENST00000621364	-0.5273	107	-	GBM
ENSG00000233527	ENST00000592880	NOMO2	ENSG00000185164	ENST00000543392	-0.2627	108	-	GBM
ENSG00000233527	ENST00000494214	ITPK1	ENSG00000100605	ENST00000354313	-0.1230	1	-	GBM
ENSG00000233527	ENST00000494214	NOMO2	ENSG00000185164	ENST00000381474	-0.1738	170	-	GBM
ENSG00000233527	ENST00000494214	NOMO2	ENSG00000185164	ENST00000621364	-0.5273	64	-	GBM
ENSG00000233527	ENST00000494214	NOMO2	ENSG00000185164	ENST00000543392	-0.1738	177	-	GBM

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000233527.7	ENST00000475219.5	78	319	83
ENSG00000233527.7	ENST00000448373.5	142	844	416
ENSG00000233527.7	ENST00000592880.5	78	769	1002
ENSG00000233527.7	ENST00000494214.2	43	204	73

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential