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lncRNA: ENSG00000233184

Summary for RP11-421L21.3

Gene summary

Gene information	Ensembl ID	ENSG00000233184
	Gene symbol	RP11-421L21.3
	Gene name
	HGNC
	Entrez ID	102606465
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-421L21.3

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000233184	3.962628e+02	1.810522e+00	2.756122e-01	6.569091e+00	5.060000e-11	1.080000e-09	UP	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for RP11-421L21.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000132780	NASP	70.91	94.8594	P49321	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000185658	BRWD1	60.56	95.3436	Q9NSI6	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000143442	POGZ	51.01	91.1066	Q7Z3K3	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000087206	UIMC1	48.19	92.8203	Q96RL1	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000135655	USP15	47.48	93.3467	Q9Y4E8	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000120616	EPC1	41.08	94.0382	Q9H2F5	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000078487	ZCWPW1	36.65	90.0037	Q9H0M4	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000083544	TDRD3	24.06	92.2805	Q9H7E2	RBP,Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000117625	RCOR3	9.04	90.452	Q9P2K3	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000143033	MTF2	3.77	90.9234	Q9Y483	TF,Epi	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000149311	ATM	85.43	92.699	Q13315	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000132780	NASP	68.22	94.3313	P49321	Epi	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000185658	BRWD1	67.2	91.4605	Q9NSI6	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000185658	BRWD1	61.73	96.9494	Q9NSI6	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000036549	ZZZ3	54.34	92.2872	Q8IYH5	TF,Epi	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000143442	POGZ	51.24	90.7212	Q7Z3K3	Epi	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000135655	USP15	48.11	93.1119	Q9Y4E8	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000087206	UIMC1	41.43	91.1724	Q96RL1	Epi	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000120616	EPC1	37.77	92.398	Q9H2F5	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000120616	EPC1	35.21	91.3788	Q9H2F5	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000141570	CBX8	35.15	91.6333	Q9HC52	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000078487	ZCWPW1	34.03	92.1457	Q9H0M4	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000083544	TDRD3	20.78	93.6799	Q9H7E2	RBP,Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000117625	RCOR3	14.22	93.9203	Q9P2K3	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000139620	KANSL2	3.97	91.3073	Q9H9L4	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000067334	DNTTIP2	63.73	90.3305	Q5QJE6	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000106443	PHF14	59.16	93.6424	O94880	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000106462	EZH2	47.46	94.5246	Q15910	Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000116560	SFPQ	35.63	91.1847	P23246	RBP,Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000067334	DNTTIP2	66.46	94.1702	Q5QJE6	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000106443	PHF14	58.87	93.8072	O94880	Epi	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000115524	SF3B1	50.95	92.6763	O75533	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000106462	EZH2	49.76	94.3928	Q15910	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000116560	SFPQ	32.38	91.9242	P23246	RBP,Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000204227	RING1	12.83	91.8511	Q06587	Epi	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000005302	MSL3	6.69	92.0556	Q8N5Y2	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000177565	TBL1XR1	5.44	90.059	Q9BZK7	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000172530	BANP	4.52	91.2813	Q8N9N5	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000133895	MEN1	3.56	91.0076	O00255	Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000073584	SMARCE1	1.87	92.3626	Q969G3	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000167967	E4F1	66.78	91.6925	Q66K89	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000099326	MZF1	55.65	91.9206	P28698	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000198521	ZNF43	43.85	90.472	P17038	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000147789	ZNF7	36.84	91.4424	P17097	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000146587	RBAK	36.08	90.8202	Q9NYW8	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000198040	ZNF84	35.36	92.424	P51523	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000164631	ZNF12	25.72	90.9396	P17014	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000184939	ZFP90	14.94	92.0267	Q8TF47	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000197857	ZNF44	14.3	91.5784	P15621	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000167766	ZNF83	9.3	91.2972	P51522	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000065029	ZNF76	8.37	90.2158	P36508	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000166526	ZNF3	7.36	90.2086	P17036	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000256223	ZNF10	6.04	90.9068	P21506	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000198429	ZNF69	5.36	92.3819	Q9UC07	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000143033	MTF2	3.77	90.6995	Q9Y483	TF,Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000085274	MYNN	3.14	91.7178	Q9NPC7	TF	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000146757	ZNF92	2.34	91.7898	Q03936	TF	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000168152	THAP9	91.12	91.3371	Q9H5L6	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000167967	E4F1	65.71	92.3889	Q66K89	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000099326	MZF1	58.05	92.6207	P28698	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000036549	ZZZ3	54.34	91.9983	Q8IYH5	TF,Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000198521	ZNF43	42.23	93.437	P17038	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000147789	ZNF7	33.29	92.8058	P17097	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000198040	ZNF84	32.82	93.5014	P51523	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000146587	RBAK	31.91	93.6833	Q9NYW8	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000164631	ZNF12	23.19	92.4234	P17014	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000065029	ZNF76	20.84	92.7556	P36508	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000166526	ZNF3	17.7	92.0625	P17036	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000177732	SOX12	12.51	90.7127	O15370	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000256223	ZNF10	12.18	92.4512	P21506	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000184939	ZFP90	11.08	92.5939	Q8TF47	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000197857	ZNF44	10.09	92.7399	P15621	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000198429	ZNF69	8.46	91.5598	Q9UC07	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000144161	ZC3H8	7.9	90.1499	Q8N5P1	TF,RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000167766	ZNF83	7.21	92.3192	P51522	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000146757	ZNF92	4.8	92.453	Q03936	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000187815	ZFP69	4.74	90.1191	Q49AA0	TF	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000221944	TIGD1	3.66	90.5686	Q96MW7	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000154957	ZNF18	3.05	91.0858	P17022	TF	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000085274	MYNN	2.91	91.6582	Q9NPC7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000163728	TTC14	63.51	90.9927	Q96N46	RBP	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000134815	DHX34	62.75	91.779	Q14147	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000004534	RBM6	62.24	94.405	P78332	RBP	High-throughput data combine LncPro prediction
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000198000	NOL8	59.75	95.719	Q76FK4	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000162775	RBM15	50.65	93.1268	Q96T37	RBP	ENCODE
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000135870	RC3H1	39.74	94.051	Q5TC82	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000116560	SFPQ	32.38	91.8111	P23246	RBP,Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000100650	SRSF5	29.62	90.9827	Q13243	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000133226	SRRM1	23.0	96.2609	Q8IYB3	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000162613	FUBP1	21.81	90.0604	Q96AE4	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000083544	TDRD3	20.78	94.3594	Q9H7E2	RBP,Epi	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000115875	SRSF7	17.88	91.9508	Q16629	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000150316	CWC15	15.66	90.5875	Q9P013	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000131013	PPIL4	15.53	92.1875	Q8WUA2	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000116350	SRSF4	11.93	93.8057	Q08170	RBP	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000117133	RPF1	9.15	90.8723	Q9H9Y2	RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000185252	ZNF74	8.37	90.0147	Q16587	TF,RBP	NA
ENSG00000233184	ENST00000446527	RP11-421L21.3	ENSG00000147274	RBMX	6.4	90.5455	P38159	RBP	NA
ENSG00000233184	ENST00000451213	RP11-421L21.3	ENSG00000155636	RBM45	5.85	90.0788	Q8IUH3	RBP	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000004534	RBM6	64.03	94.9011	P78332	RBP	High-throughput data combine LncPro prediction
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000198000	NOL8	57.27	94.502	Q76FK4	RBP	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000116560	SFPQ	35.63	91.3934	P23246	RBP,Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000133226	SRRM1	27.49	95.7674	Q8IYB3	RBP	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000083544	TDRD3	24.06	92.0123	Q9H7E2	RBP,Epi	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000184863	RBM33	19.87	93.6972	Q96EV2	RBP	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000164548	TRA2A	11.4	90.0213	Q13595	RBP	NA
ENSG00000233184	ENST00000449473	RP11-421L21.3	ENSG00000147274	RBMX	4.81	91.6942	P38159	RBP	NA

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lncRNA-DNA interaction for RP11-421L21.3

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-421L21.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SLC16A3,RNH1,SEC24A,GNA11,ATP2A2,CRY2,SLC35E1,MGAT1,ARHGDIA,FLNA,RPTOR,AP3D1,CHP1,CPEB4,TMEM127,KIF13B,GRN,ACTN4,KBTBD4,TOLLIP,ALDOA,UGGT1,USP32,LARP1,CLPTM1,ARF3,MVP,SUN2,MID2,RNF19B,SF3A1,ATG2A,PLEKHB2,GABARAPL1,VPS18,TMBIM6,DDB1,ATP6V0C,CCDC9,OS9,CLTC,PIGS,RAB35,NOMO2,ILRUN

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000233184	ENST00000451213	exon_skip_83419	chr12:53467804-53467843	-7.05	-0.2203	PCBP2	ENST00000439930	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000233184	ENST00000451213	exon_skip_382458	chr3:38131595-38131638	-10.80	-0.2842	ACAA1	ENST00000333167	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_41813	chr10:68337857-68337996	-15.26	-0.1453	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_53559	chr10:101793912-101793998	-8.74	-0.1714	OGA	ENST00000361464	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_111863	chr14:23565815-23565892	-11.06	-0.2048	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_370518	chr22:50247691-50247776	-12.35	-0.1739	HDAC10	ENST00000216271	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_370525	chr22:50250426-50250523	-11.12	-0.1308	HDAC10	ENST00000216271	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_436035	chr5:79656957-79657001	-7.77	-0.2045	TENT2	ENST00000296783,ENST00000428308,ENST00000453514	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_442657	chr5:74730259-74730398	-10.45	-0.1005	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_470226	chr7:103307595-103307708	-11.15	-0.1062	PMPCB	ENST00000249269	Frame-shift
ENSG00000233184	ENST00000449473	exon_skip_327433	chr2:86125794-86125880	-7.70	-0.1242	PTCD3	ENST00000254630	Frame-shift
ENSG00000233184	ENST00000451213	exon_skip_377198	chr3:123130479-123130616	-11.92	-0.1125	PDIA5	ENST00000316218	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-421L21.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_13838	ENSG00000233184.5	chr1	101075557	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13868	ENSG00000233184.5	chr1	101075578	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13893	ENSG00000233184.5	chr1	101075597	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13898	ENSG00000233184.5	chr1	101075607	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13903	ENSG00000233184.5	chr1	101075608	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13918	ENSG00000233184.5	chr1	101075613	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13923	ENSG00000233184.5	chr1	101075614	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13928	ENSG00000233184.5	chr1	101075616	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13983	ENSG00000233184.5	chr1	101076682	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13988	ENSG00000233184.5	chr1	101076684	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13993	ENSG00000233184.5	chr1	101076693	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007
LncEditing_13998	ENSG00000233184.5	chr1	101076703	+	antisense	RP11-421L21.3	ENST00000454721.4	antisense	RP11-421L21.3-007

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000233184	LncEditing_13893	SARC	chr1_101075597_+	3.016842e+00	1.589540e+00	1.081748e+00	7.720807e+00	1.155953e-14	3.645697e-14	UP
ENSG00000233184	LncEditing_13903	SARC	chr1_101075608_+	3.658519e+00	1.699817e+00	9.042566e-01	6.963793e+00	3.312319e-12	7.514142e-12	UP
ENSG00000233184	LncEditing_13928	SARC	chr1_101075616_+	3.465255e+00	1.698657e+00	9.722262e-01	6.597077e+00	4.193424e-11	8.144071e-11	UP
ENSG00000233184	LncEditing_13893	KIRC	chr1_101075597_+	1.651860e+00	1.257404e+00	2.540372e+00	6.002877e+00	1.938519e-09	2.813124e-09	UP
ENSG00000233184	LncEditing_13903	KIRC	chr1_101075608_+	1.807509e+00	1.281829e+00	2.016943e+00	6.105151e+00	1.027037e-09	1.499191e-09	UP
ENSG00000233184	LncEditing_13928	KIRC	chr1_101075616_+	1.767697e+00	1.264866e+00	2.070880e+00	6.784405e+00	1.165656e-11	1.831040e-11	UP
ENSG00000233184	LncEditing_13838	GBM	chr1_101075557_+	4.137097e+00	3.213480e+00	2.743617e+00	3.427372e+00	6.094544e-04	7.768622e-04	UP
ENSG00000233184	LncEditing_13868	GBM	chr1_101075578_+	4.368447e+00	3.006064e+00	1.854445e+00	4.907402e+00	9.229090e-07	1.773476e-06	UP
ENSG00000233184	LncEditing_13893	GBM	chr1_101075597_+	3.700525e+00	2.473099e+00	1.719957e+00	5.696122e+00	1.225629e-08	3.327295e-08	UP
ENSG00000233184	LncEditing_13898	GBM	chr1_101075607_+	3.927173e+00	2.901680e+00	2.290412e+00	4.878013e+00	1.071597e-06	2.044627e-06	UP
ENSG00000233184	LncEditing_13903	GBM	chr1_101075608_+	3.813152e+00	2.728524e+00	2.070981e+00	5.166822e+00	2.381076e-07	5.109523e-07	UP
ENSG00000233184	LncEditing_13918	GBM	chr1_101075613_+	4.182070e+00	3.002695e+00	2.092230e+00	4.764093e+00	1.897053e-06	3.519991e-06	UP
ENSG00000233184	LncEditing_13923	GBM	chr1_101075614_+	3.872412e+00	2.728915e+00	1.980571e+00	5.670063e+00	1.427454e-08	3.811254e-08	UP
ENSG00000233184	LncEditing_13928	GBM	chr1_101075616_+	3.669514e+00	2.475969e+00	1.761818e+00	5.573676e+00	2.494200e-08	6.385467e-08	UP
ENSG00000233184	LncEditing_13893	MESO	chr1_101075597_+	2.274476e+00	1.286073e+00	1.215714e+00	4.105895e+00	4.027523e-05	1.063241e-04	UP
ENSG00000233184	LncEditing_13928	MESO	chr1_101075616_+	2.630023e+00	1.308698e+00	9.931042e-01	3.914960e+00	9.041907e-05	2.052579e-04	UP
ENSG00000233184	LncEditing_13868	LGG	chr1_101075578_+	3.437567e+00	2.305727e+00	1.735610e+00	6.919050e+00	4.546828e-12	7.517706e-12	UP
ENSG00000233184	LncEditing_13893	LGG	chr1_101075597_+	3.163955e+00	1.962309e+00	1.451007e+00	1.212628e+01	7.664987e-34	5.882044e-33	UP
ENSG00000233184	LncEditing_13898	LGG	chr1_101075607_+	3.503545e+00	2.284664e+00	1.621182e+00	7.431592e+00	1.072982e-13	1.972721e-13	UP
ENSG00000233184	LncEditing_13903	LGG	chr1_101075608_+	3.436442e+00	2.167017e+00	1.503296e+00	1.008039e+01	6.746007e-24	2.560581e-23	UP
ENSG00000233184	LncEditing_13923	LGG	chr1_101075614_+	3.368855e+00	2.263332e+00	1.742737e+00	7.828907e+00	4.921281e-15	1.010007e-14	UP
ENSG00000233184	LncEditing_13928	LGG	chr1_101075616_+	3.356726e+00	2.038709e+00	1.390050e+00	1.156879e+01	5.931150e-31	3.841644e-30	UP
ENSG00000233184	LncEditing_13893	ACC	chr1_101075597_+	3.364453e+00	1.758766e+00	1.068595e+00	4.234148e+00	2.294200e-05	1.009094e-04	UP
ENSG00000233184	LncEditing_13903	ACC	chr1_101075608_+	3.710304e+00	1.814346e+00	9.689100e-01	3.657347e+00	2.548388e-04	6.007305e-04	UP
ENSG00000233184	LncEditing_13893	LUSC	chr1_101075597_+	2.183153e+00	1.160573e+00	1.097001e+00	1.027809e+01	8.846271e-25	3.401602e-24	UP
ENSG00000233184	LncEditing_13903	LUSC	chr1_101075608_+	2.252703e+00	1.246316e+00	1.170977e+00	8.287597e+00	1.155590e-16	2.275949e-16	UP
ENSG00000233184	LncEditing_13928	LUSC	chr1_101075616_+	2.179949e+00	1.203805e+00	1.167279e+00	9.091310e+00	9.785269e-20	2.528514e-19	UP
ENSG00000233184	LncEditing_13893	KICH	chr1_101075597_+	1.477375e+00	1.042346e+00	1.987273e+00	2.719558e+00	6.536930e-03	9.520685e-03	UP
ENSG00000233184	LncEditing_13893	SKCM	chr1_101075597_+	2.399896e+00	1.262720e+00	1.079404e+00	1.105693e+01	2.029350e-28	9.556821e-28	UP
ENSG00000233184	LncEditing_13903	SKCM	chr1_101075608_+	2.653249e+00	1.378912e+00	1.059065e+00	8.736538e+00	2.403638e-18	4.214171e-18	UP
ENSG00000233184	LncEditing_13923	SKCM	chr1_101075614_+	2.609575e+00	1.393736e+00	1.105146e+00	8.137108e+00	4.048317e-16	6.306032e-16	UP
ENSG00000233184	LncEditing_13928	SKCM	chr1_101075616_+	2.482979e+00	1.302561e+00	1.074436e+00	1.075058e+01	5.889109e-27	2.315620e-26	UP
ENSG00000233184	LncEditing_13838	LAML	chr1_101075557_+	5.458354e+00	3.785458e+00	1.893947e+00	3.597908e+00	3.207875e-04	4.564200e-04	UP
ENSG00000233184	LncEditing_13868	LAML	chr1_101075578_+	5.115763e+00	3.782028e+00	2.294686e+00	3.642666e+00	2.698286e-04	3.915845e-04	UP
ENSG00000233184	LncEditing_13893	LAML	chr1_101075597_+	5.147668e+00	2.894913e+00	1.204241e+00	6.840088e+00	7.914435e-12	6.346966e-11	UP
ENSG00000233184	LncEditing_13898	LAML	chr1_101075607_+	5.138500e+00	3.689725e+00	2.092778e+00	4.195661e+00	2.720765e-05	4.739274e-05	UP
ENSG00000233184	LncEditing_13903	LAML	chr1_101075608_+	5.124745e+00	2.950266e+00	1.255280e+00	6.702435e+00	2.049749e-11	1.515833e-10	UP
ENSG00000233184	LncEditing_13918	LAML	chr1_101075613_+	5.523283e+00	3.714058e+00	1.746634e+00	4.682192e+00	2.838233e-06	6.081319e-06	UP
ENSG00000233184	LncEditing_13923	LAML	chr1_101075614_+	5.197471e+00	3.447794e+00	1.688801e+00	4.674257e+00	2.950200e-06	6.281891e-06	UP
ENSG00000233184	LncEditing_13928	LAML	chr1_101075616_+	5.005431e+00	2.536648e+00	1.019814e+00	7.454469e+00	9.023064e-14	1.252077e-12	UP
ENSG00000233184	LncEditing_13983	LAML	chr1_101076682_+	7.498335e+00	3.695768e+00	9.797237e-01	5.175795e+00	2.269425e-07	5.950615e-07	UP
ENSG00000233184	LncEditing_13988	LAML	chr1_101076684_+	7.001676e+00	3.702022e+00	1.087682e+00	4.715465e+00	2.411599e-06	5.280717e-06	UP
ENSG00000233184	LncEditing_13993	LAML	chr1_101076693_+	7.152425e+00	3.603443e+00	1.011064e+00	5.664973e+00	1.470473e-08	5.038520e-08	UP
ENSG00000233184	LncEditing_13998	LAML	chr1_101076703_+	7.088209e+00	3.613247e+00	1.028674e+00	5.708888e+00	1.137167e-08	4.035635e-08	UP
ENSG00000233184	LncEditing_13893	THCA	chr1_101075597_+	2.016033e+00	1.718841e+00	4.346256e+00	5.824238e+00	5.737369e-09	9.976163e-09	UP
ENSG00000233184	LncEditing_13903	THCA	chr1_101075608_+	2.043992e+00	1.769888e+00	4.813921e+00	3.840758e+00	1.226552e-04	1.561298e-04	UP
ENSG00000233184	LncEditing_13928	THCA	chr1_101075616_+	2.068961e+00	1.749793e+00	4.136972e+00	4.910891e+00	9.066365e-07	1.357733e-06	UP
ENSG00000233184	LncEditing_13893	CHOL	chr1_101075597_+	2.920608e+00	1.322329e+00	8.747468e-01	2.365825e+00	1.798994e-02	2.342876e-02	UP
ENSG00000233184	LncEditing_13893	THYM	chr1_101075597_+	3.457884e+00	2.955648e+00	4.416665e+00	2.347279e+00	1.891109e-02	2.062336e-02	UP
ENSG00000233184	LncEditing_13903	THYM	chr1_101075608_+	3.623429e+00	3.002795e+00	3.689359e+00	2.294515e+00	2.176095e-02	2.358887e-02	UP
ENSG00000233184	LncEditing_13928	THYM	chr1_101075616_+	3.488525e+00	2.989968e+00	4.494641e+00	2.195305e+00	2.814176e-02	2.973262e-02	UP
ENSG00000233184	LncEditing_13838	OV	chr1_101075557_+	2.473733e+00	1.929543e+00	2.789942e+00	3.275670e+00	1.054115e-03	1.148411e-03	UP
ENSG00000233184	LncEditing_13893	OV	chr1_101075597_+	2.187829e+00	1.686845e+00	2.665442e+00	5.114536e+00	3.145125e-07	4.249732e-07	UP
ENSG00000233184	LncEditing_13898	OV	chr1_101075607_+	2.190222e+00	1.943395e+00	5.797164e+00	2.758002e+00	5.815577e-03	6.076617e-03	UP
ENSG00000233184	LncEditing_13903	OV	chr1_101075608_+	2.291551e+00	1.825366e+00	3.047494e+00	4.666709e+00	3.060628e-06	3.876374e-06	UP
ENSG00000233184	LncEditing_13918	OV	chr1_101075613_+	2.344131e+00	1.930926e+00	3.574490e+00	3.397210e+00	6.807672e-04	7.487625e-04	UP
ENSG00000233184	LncEditing_13923	OV	chr1_101075614_+	2.218951e+00	1.913528e+00	4.680713e+00	3.227234e+00	1.249934e-03	1.353727e-03	UP
ENSG00000233184	LncEditing_13928	OV	chr1_101075616_+	2.171978e+00	1.708861e+00	2.890389e+00	4.539788e+00	5.631075e-06	7.001722e-06	UP
ENSG00000233184	LncEditing_13893	LUAD	chr1_101075597_+	2.691266e+00	1.482253e+00	1.162124e+00	9.506214e+00	1.977289e-21	6.794969e-21	UP
ENSG00000233184	LncEditing_13928	LUAD	chr1_101075616_+	2.840536e+00	1.538380e+00	1.130261e+00	9.265194e+00	1.947236e-20	6.154402e-20	UP
ENSG00000233184	LncEditing_13838	STAD	chr1_101075557_+	1.727475e+00	1.135804e+00	1.653026e+00	5.482891e+00	4.184300e-08	5.728411e-08	UP
ENSG00000233184	LncEditing_13868	STAD	chr1_101075578_+	1.697685e+00	1.129830e+00	1.702236e+00	5.794443e+00	6.854820e-09	9.865430e-09	UP
ENSG00000233184	LncEditing_13893	STAD	chr1_101075597_+	1.541197e+00	9.198301e-01	1.342981e+00	9.357705e+00	8.148721e-21	4.094375e-20	UP
ENSG00000233184	LncEditing_13898	STAD	chr1_101075607_+	1.655983e+00	1.089173e+00	1.654385e+00	6.599443e+00	4.127043e-11	7.111824e-11	UP
ENSG00000233184	LncEditing_13903	STAD	chr1_101075608_+	1.713885e+00	9.831898e-01	1.247305e+00	9.131202e+00	6.774309e-20	2.957564e-19	UP
ENSG00000233184	LncEditing_13918	STAD	chr1_101075613_+	1.701281e+00	1.112657e+00	1.632352e+00	5.899555e+00	3.644840e-09	5.364246e-09	UP
ENSG00000233184	LncEditing_13923	STAD	chr1_101075614_+	1.598113e+00	1.087957e+00	1.802624e+00	5.981974e+00	2.204492e-09	3.316000e-09	UP
ENSG00000233184	LncEditing_13928	STAD	chr1_101075616_+	1.570149e+00	9.295382e-01	1.322199e+00	9.441503e+00	3.674712e-21	1.934628e-20	UP
ENSG00000233184	LncEditing_13893	PRAD	chr1_101075597_+	1.753591e+00	1.387918e+00	2.963926e+00	4.737653e+00	2.162077e-06	2.978525e-06	UP
ENSG00000233184	LncEditing_13893	BRCA	chr1_101075597_+	2.038395e+00	1.356982e+00	1.703485e+00	1.189511e+01	1.254917e-32	2.555531e-32	UP
ENSG00000233184	LncEditing_13898	BRCA	chr1_101075607_+	2.172728e+00	1.471806e+00	1.779613e+00	8.319691e+00	8.819314e-17	1.159429e-16	UP
ENSG00000233184	LncEditing_13903	BRCA	chr1_101075608_+	2.199285e+00	1.424242e+00	1.595303e+00	9.877515e+00	5.210932e-23	7.731322e-23	UP
ENSG00000233184	LncEditing_13923	BRCA	chr1_101075614_+	2.182695e+00	1.440765e+00	1.668683e+00	8.695398e+00	3.456151e-18	4.653003e-18	UP
ENSG00000233184	LncEditing_13928	BRCA	chr1_101075616_+	2.051493e+00	1.385987e+00	1.767533e+00	1.116921e+01	5.769021e-29	1.043303e-28	UP
ENSG00000233184	LncEditing_13838	ESCA	chr1_101075557_+	1.821685e+00	1.232693e+00	1.774748e+00	3.492897e+00	4.778111e-04	5.623201e-04	UP
ENSG00000233184	LncEditing_13868	ESCA	chr1_101075578_+	1.750491e+00	1.200380e+00	1.837328e+00	3.983824e+00	6.781513e-05	8.656548e-05	UP
ENSG00000233184	LncEditing_13893	ESCA	chr1_101075597_+	1.648035e+00	8.404381e-01	1.029301e+00	7.242239e+00	4.413372e-13	2.278431e-12	UP
ENSG00000233184	LncEditing_13898	ESCA	chr1_101075607_+	1.734918e+00	1.118922e+00	1.580382e+00	4.332821e+00	1.472110e-05	2.029963e-05	UP
ENSG00000233184	LncEditing_13903	ESCA	chr1_101075608_+	1.674787e+00	9.694250e-01	1.267786e+00	6.228100e+00	4.721253e-10	1.337858e-09	UP
ENSG00000233184	LncEditing_13918	ESCA	chr1_101075613_+	1.805652e+00	1.200761e+00	1.699029e+00	3.536624e+00	4.052766e-04	4.796498e-04	UP
ENSG00000233184	LncEditing_13923	ESCA	chr1_101075614_+	1.703096e+00	1.023984e+00	1.362460e+00	5.956012e+00	2.584675e-09	6.306727e-09	UP
ENSG00000233184	LncEditing_13928	ESCA	chr1_101075616_+	1.613071e+00	8.435027e-01	1.069124e+00	7.160446e+00	8.041492e-13	3.919760e-12	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000233184	LncEditing_13838	-3.810299e-01	9.813678e-03	1.213429e-02
ENSG00000233184	LncEditing_13903	-3.893605e-01	2.757176e-03	3.509133e-03
ENSG00000233184	LncEditing_13918	-3.925946e-01	1.333185e-03	2.490024e-03
ENSG00000233184	LncEditing_13838	-5.325899e-01	1.293285e-02	2.289208e-02
ENSG00000233184	LncEditing_13868	-3.747368e-01	3.458512e-02	3.993758e-02
ENSG00000233184	LncEditing_13923	-3.198067e-01	7.848673e-03	1.762318e-02
ENSG00000233184	LncEditing_13923	-3.033768e-01	2.954999e-03	3.354323e-03
ENSG00000233184	LncEditing_13838	-5.790301e-01	1.939322e-03	9.562960e-03
ENSG00000233184	LncEditing_13868	-3.936527e-01	2.341729e-02	3.203308e-02
ENSG00000233184	LncEditing_13918	-4.758973e-01	7.856269e-03	1.752552e-02
ENSG00000233184	LncEditing_13923	-3.660706e-01	6.482650e-03	1.602777e-02
ENSG00000233184	LncEditing_13993	-4.969529e-01	2.580464e-02	3.386129e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000233184	ENST00000453011	TOLLIP	ENSG00000078902	ENST00000527938	-0.1295	1	-	GBM
ENSG00000233184	ENST00000453011	CRY2	ENSG00000121671	ENST00000616080	-0.1289	51	-	GBM
ENSG00000233184	ENST00000453011	GABARAPL1	ENSG00000139112	ENST00000539408	-0.1219	13	-	GBM
ENSG00000233184	ENST00000453011	GABARAPL1	ENSG00000139112	ENST00000421801	-0.1466	276	-	GBM
ENSG00000233184	ENST00000453011	GABARAPL1	ENSG00000139112	ENST00000544284	-0.3375	1	-	GBM
ENSG00000233184	ENST00000453011	GABARAPL1	ENSG00000139112	ENST00000545047	-0.1286	1	-	GBM
ENSG00000233184	ENST00000453011	GABARAPL1	ENSG00000139112	ENST00000541453	-0.1115	11	-	GBM
ENSG00000233184	ENST00000453011	GABARAPL1	ENSG00000139112	ENST00000543602	-0.1053	611	-	GBM
ENSG00000233184	ENST00000453011	GABARAPL1	ENSG00000139112	ENST00000545887	-0.1837	80	-	GBM
ENSG00000233184	ENST00000453011	CHP1	ENSG00000187446	ENST00000560784	-0.1093	400	-	GBM
ENSG00000233184	ENST00000453011	CHP1	ENSG00000187446	ENST00000560397	-0.6783	510	-	GBM
ENSG00000233184	ENST00000453011	SUN2	ENSG00000100242	ENST00000406622	-0.1362	1	-	GBM
ENSG00000233184	ENST00000453011	SUN2	ENSG00000100242	ENST00000455125	-0.1067	1	-	GBM
ENSG00000233184	ENST00000453011	SUN2	ENSG00000100242	ENST00000430185	-0.6412	41	-	GBM
ENSG00000233184	ENST00000453011	RPTOR	ENSG00000141564	ENST00000576366	-0.1370	31	-	GBM
ENSG00000233184	ENST00000446527	TOLLIP	ENSG00000078902	ENST00000527938	-0.1204	578	-	GBM
ENSG00000233184	ENST00000446527	CRY2	ENSG00000121671	ENST00000616080	-0.1286	10	-	GBM
ENSG00000233184	ENST00000446527	GABARAPL1	ENSG00000139112	ENST00000539408	-0.1219	642	-	GBM
ENSG00000233184	ENST00000446527	GABARAPL1	ENSG00000139112	ENST00000544284	-0.2241	58	-	GBM
ENSG00000233184	ENST00000446527	GABARAPL1	ENSG00000139112	ENST00000541453	-0.1026	1	-	GBM
ENSG00000233184	ENST00000446527	GABARAPL1	ENSG00000139112	ENST00000543602	-0.1295	933	-	GBM
ENSG00000233184	ENST00000446527	GABARAPL1	ENSG00000139112	ENST00000537201	-0.1128	1	-	GBM
ENSG00000233184	ENST00000446527	GABARAPL1	ENSG00000139112	ENST00000545887	-0.2284	39	-	GBM
ENSG00000233184	ENST00000446527	CHP1	ENSG00000187446	ENST00000560397	-0.6783	501	-	GBM
ENSG00000233184	ENST00000446527	SUN2	ENSG00000100242	ENST00000455125	-0.1215	1	-	GBM
ENSG00000233184	ENST00000446527	SUN2	ENSG00000100242	ENST00000430185	-1.0567	1	-	GBM
ENSG00000233184	ENST00000446527	RPTOR	ENSG00000141564	ENST00000570891	-0.1233	1	-	GBM
ENSG00000233184	ENST00000446527	RPTOR	ENSG00000141564	ENST00000576366	-0.1370	1	-	GBM
ENSG00000233184	ENST00000416329	CRY2	ENSG00000121671	ENST00000616080	-0.1215	228	-	GBM
ENSG00000233184	ENST00000416329	GABARAPL1	ENSG00000139112	ENST00000539408	-0.1216	204	-	GBM
ENSG00000233184	ENST00000416329	GABARAPL1	ENSG00000139112	ENST00000421801	-0.1466	121	-	GBM
ENSG00000233184	ENST00000416329	GABARAPL1	ENSG00000139112	ENST00000544284	-0.2418	512	-	GBM
ENSG00000233184	ENST00000416329	GABARAPL1	ENSG00000139112	ENST00000541453	-0.1574	579	-	GBM
ENSG00000233184	ENST00000416329	GABARAPL1	ENSG00000139112	ENST00000543602	-0.1053	456	-	GBM
ENSG00000233184	ENST00000416329	GABARAPL1	ENSG00000139112	ENST00000545887	-0.1238	493	-	GBM
ENSG00000233184	ENST00000416329	CHP1	ENSG00000187446	ENST00000560784	-0.1093	245	-	GBM
ENSG00000233184	ENST00000416329	CHP1	ENSG00000187446	ENST00000560397	-0.6783	355	-	GBM
ENSG00000233184	ENST00000416329	SUN2	ENSG00000100242	ENST00000430185	-0.7983	589	-	GBM
ENSG00000233184	ENST00000416329	RPTOR	ENSG00000141564	ENST00000576366	-0.1524	3	-	GBM
ENSG00000233184	ENST00000454721	TOLLIP	ENSG00000078902	ENST00000527938	-0.1193	372	-	GBM
ENSG00000233184	ENST00000454721	CRY2	ENSG00000121671	ENST00000616080	-0.1263	402	-	GBM
ENSG00000233184	ENST00000454721	GABARAPL1	ENSG00000139112	ENST00000539408	-0.1131	206	-	GBM
ENSG00000233184	ENST00000454721	GABARAPL1	ENSG00000139112	ENST00000544284	-0.1961	288	-	GBM
ENSG00000233184	ENST00000454721	GABARAPL1	ENSG00000139112	ENST00000543602	-0.1398	329	-	GBM
ENSG00000233184	ENST00000454721	GABARAPL1	ENSG00000139112	ENST00000545887	-0.1150	269	-	GBM
ENSG00000233184	ENST00000454721	CHP1	ENSG00000187446	ENST00000560397	-0.6783	529	-	GBM
ENSG00000233184	ENST00000454721	SUN2	ENSG00000100242	ENST00000406622	-0.1086	520	-	GBM
ENSG00000233184	ENST00000454721	SUN2	ENSG00000100242	ENST00000455125	-0.1144	185	-	GBM
ENSG00000233184	ENST00000454721	SUN2	ENSG00000100242	ENST00000430185	-0.3040	678	-	GBM
ENSG00000233184	ENST00000449473	CRY2	ENSG00000121671	ENST00000616080	-0.1203	662	-	GBM
ENSG00000233184	ENST00000449473	GABARAPL1	ENSG00000139112	ENST00000539408	-0.1240	570	-	GBM
ENSG00000233184	ENST00000449473	GABARAPL1	ENSG00000139112	ENST00000421801	-0.1157	732	-	GBM
ENSG00000233184	ENST00000449473	GABARAPL1	ENSG00000139112	ENST00000544284	-0.2024	976	-	GBM
ENSG00000233184	ENST00000449473	GABARAPL1	ENSG00000139112	ENST00000543602	-0.1295	1089	-	GBM
ENSG00000233184	ENST00000449473	GABARAPL1	ENSG00000139112	ENST00000537201	-0.1054	570	-	GBM
ENSG00000233184	ENST00000449473	GABARAPL1	ENSG00000139112	ENST00000545887	-0.1847	957	-	GBM
ENSG00000233184	ENST00000449473	CHP1	ENSG00000187446	ENST00000560784	-0.1093	216	-	GBM
ENSG00000233184	ENST00000449473	CHP1	ENSG00000187446	ENST00000560397	-0.6783	326	-	GBM
ENSG00000233184	ENST00000449473	SUN2	ENSG00000100242	ENST00000430185	-1.2775	1009	-	GBM
ENSG00000233184	ENST00000449473	RPTOR	ENSG00000141564	ENST00000576366	-0.1179	722	-	GBM
ENSG00000233184	ENST00000451213	TOLLIP	ENSG00000078902	ENST00000527938	-0.1228	479	-	GBM
ENSG00000233184	ENST00000451213	CRY2	ENSG00000121671	ENST00000616080	-0.1270	477	-	GBM
ENSG00000233184	ENST00000451213	GABARAPL1	ENSG00000139112	ENST00000539408	-0.1219	1038	-	GBM
ENSG00000233184	ENST00000451213	GABARAPL1	ENSG00000139112	ENST00000544284	-0.2024	1216	-	GBM
ENSG00000233184	ENST00000451213	GABARAPL1	ENSG00000139112	ENST00000543602	-0.1295	1329	-	GBM
ENSG00000233184	ENST00000451213	GABARAPL1	ENSG00000139112	ENST00000545887	-0.1847	1197	-	GBM
ENSG00000233184	ENST00000451213	CHP1	ENSG00000187446	ENST00000560397	-0.6671	890	-	GBM
ENSG00000233184	ENST00000451213	SUN2	ENSG00000100242	ENST00000430185	-0.3010	336	-	GBM
ENSG00000233184	ENST00000451213	RPTOR	ENSG00000141564	ENST00000576366	-0.1034	340	-	GBM
ENSG00000233184	ENST00000453011	ARF3	ENSG00000134287	ENST00000541959	-0.6530	68	-	GBM
ENSG00000233184	ENST00000453011	LARP1	ENSG00000155506	ENST00000518892	-0.1588	1	-	GBM
ENSG00000233184	ENST00000453011	LARP1	ENSG00000155506	ENST00000518677	-0.1108	1	-	GBM
ENSG00000233184	ENST00000453011	LARP1	ENSG00000155506	ENST00000522272	-0.1773	1	-	GBM
ENSG00000233184	ENST00000453011	USP32	ENSG00000170832	ENST00000593071	-0.1097	9	-	GBM
ENSG00000233184	ENST00000453011	USP32	ENSG00000170832	ENST00000589552	-0.1236	1	-	GBM
ENSG00000233184	ENST00000453011	USP32	ENSG00000170832	ENST00000590297	-0.1264	1	-	GBM
ENSG00000233184	ENST00000453011	ATP2A2	ENSG00000174437	ENST00000553144	-0.1499	59	-	GBM
ENSG00000233184	ENST00000453011	NOMO2	ENSG00000185164	ENST00000330537	-0.1206	1	-	GBM
ENSG00000233184	ENST00000453011	NOMO2	ENSG00000185164	ENST00000620440	-0.1206	1	-	GBM
ENSG00000233184	ENST00000453011	NOMO2	ENSG00000185164	ENST00000381474	-1.1580	492	-	GBM
ENSG00000233184	ENST00000453011	NOMO2	ENSG00000185164	ENST00000622306	-0.1206	1	-	GBM
ENSG00000233184	ENST00000453011	NOMO2	ENSG00000185164	ENST00000621364	-0.2771	25	-	GBM
ENSG00000233184	ENST00000453011	NOMO2	ENSG00000185164	ENST00000543392	-1.1580	499	-	GBM
ENSG00000233184	ENST00000453011	NOMO2	ENSG00000185164	ENST00000567831	-0.1669	1	-	GBM
ENSG00000233184	ENST00000453011	ATP6V0C	ENSG00000185883	ENST00000568562	-0.3623	1	-	GBM
ENSG00000233184	ENST00000453011	ATP6V0C	ENSG00000185883	ENST00000565223	-0.1576	1	-	GBM
ENSG00000233184	ENST00000453011	ILRUN	ENSG00000196821	ENST00000374021	-0.4383	1	-	GBM
ENSG00000233184	ENST00000453011	KIF13B	ENSG00000197892	ENST00000523130	-2.3067	3	-	GBM
ENSG00000233184	ENST00000446527	ARF3	ENSG00000134287	ENST00000541959	-3.6250	873	-	GBM
ENSG00000233184	ENST00000446527	LARP1	ENSG00000155506	ENST00000518892	-0.1203	247	-	GBM
ENSG00000233184	ENST00000446527	USP32	ENSG00000170832	ENST00000300896	-0.1507	1	-	GBM
ENSG00000233184	ENST00000446527	USP32	ENSG00000170832	ENST00000593071	-0.1507	1	-	GBM
ENSG00000233184	ENST00000446527	USP32	ENSG00000170832	ENST00000589552	-0.1045	1	-	GBM
ENSG00000233184	ENST00000446527	USP32	ENSG00000170832	ENST00000590297	-0.2344	1	-	GBM
ENSG00000233184	ENST00000446527	ATP2A2	ENSG00000174437	ENST00000553144	-0.1155	414	-	GBM
ENSG00000233184	ENST00000446527	NOMO2	ENSG00000185164	ENST00000381474	-1.1580	483	-	GBM
ENSG00000233184	ENST00000446527	NOMO2	ENSG00000185164	ENST00000621364	-0.2771	1	-	GBM
ENSG00000233184	ENST00000446527	NOMO2	ENSG00000185164	ENST00000543392	-1.1580	490	-	GBM
ENSG00000233184	ENST00000446527	NOMO2	ENSG00000185164	ENST00000567831	-0.1964	1	-	GBM
ENSG00000233184	ENST00000446527	ATP6V0C	ENSG00000185883	ENST00000568562	-0.2174	1	-	GBM
ENSG00000233184	ENST00000446527	ATP6V0C	ENSG00000185883	ENST00000565223	-0.1929	1	-	GBM
ENSG00000233184	ENST00000446527	ILRUN	ENSG00000196821	ENST00000374021	-0.4288	877	-	GBM
ENSG00000233184	ENST00000446527	KIF13B	ENSG00000197892	ENST00000523130	-0.9914	436	-	GBM
ENSG00000233184	ENST00000416329	ARF3	ENSG00000134287	ENST00000541959	-0.6083	298	-	GBM
ENSG00000233184	ENST00000416329	USP32	ENSG00000170832	ENST00000592339	-0.2334	655	-	GBM
ENSG00000233184	ENST00000416329	ATP2A2	ENSG00000174437	ENST00000553144	-0.1376	585	-	GBM
ENSG00000233184	ENST00000416329	NOMO2	ENSG00000185164	ENST00000381474	-1.1580	337	-	GBM
ENSG00000233184	ENST00000416329	NOMO2	ENSG00000185164	ENST00000621364	-0.2042	333	-	GBM
ENSG00000233184	ENST00000416329	NOMO2	ENSG00000185164	ENST00000543392	-1.1580	344	-	GBM
ENSG00000233184	ENST00000416329	ATP6V0C	ENSG00000185883	ENST00000568562	-0.1157	11	-	GBM
ENSG00000233184	ENST00000416329	ATP6V0C	ENSG00000185883	ENST00000565223	-0.1035	200	-	GBM
ENSG00000233184	ENST00000416329	ILRUN	ENSG00000196821	ENST00000374021	-0.1077	282	-	GBM
ENSG00000233184	ENST00000416329	KIF13B	ENSG00000197892	ENST00000523130	-0.8680	134	-	GBM
ENSG00000233184	ENST00000454721	ARF3	ENSG00000134287	ENST00000541959	-2.5400	276	-	GBM
ENSG00000233184	ENST00000454721	LARP1	ENSG00000155506	ENST00000518892	-0.1203	275	-	GBM
ENSG00000233184	ENST00000454721	ATP2A2	ENSG00000174437	ENST00000553144	-0.1155	442	-	GBM
ENSG00000233184	ENST00000454721	NOMO2	ENSG00000185164	ENST00000381474	-1.1580	511	-	GBM
ENSG00000233184	ENST00000454721	NOMO2	ENSG00000185164	ENST00000621364	-0.7543	674	-	GBM
ENSG00000233184	ENST00000454721	NOMO2	ENSG00000185164	ENST00000543392	-1.1580	518	-	GBM
ENSG00000233184	ENST00000454721	ATP6V0C	ENSG00000185883	ENST00000568562	-0.1550	1	-	GBM
ENSG00000233184	ENST00000454721	ATP6V0C	ENSG00000185883	ENST00000565223	-0.1003	555	-	GBM
ENSG00000233184	ENST00000454721	ILRUN	ENSG00000196821	ENST00000374021	-0.3285	292	-	GBM
ENSG00000233184	ENST00000454721	KIF13B	ENSG00000197892	ENST00000523130	-0.9914	464	-	GBM
ENSG00000233184	ENST00000449473	ARF3	ENSG00000134287	ENST00000541959	-3.6250	1029	-	GBM
ENSG00000233184	ENST00000449473	USP32	ENSG00000170832	ENST00000593071	-0.1040	720	-	GBM
ENSG00000233184	ENST00000449473	USP32	ENSG00000170832	ENST00000590297	-0.1111	773	-	GBM
ENSG00000233184	ENST00000449473	ATP2A2	ENSG00000174437	ENST00000553144	-0.1376	556	-	GBM
ENSG00000233184	ENST00000449473	NOMO2	ENSG00000185164	ENST00000381474	-1.1580	308	-	GBM
ENSG00000233184	ENST00000449473	NOMO2	ENSG00000185164	ENST00000621364	-0.7543	696	-	GBM
ENSG00000233184	ENST00000449473	NOMO2	ENSG00000185164	ENST00000543392	-1.1580	315	-	GBM
ENSG00000233184	ENST00000449473	ATP6V0C	ENSG00000185883	ENST00000568562	-0.1550	1	-	GBM
ENSG00000233184	ENST00000449473	ILRUN	ENSG00000196821	ENST00000374021	-0.4288	1033	-	GBM
ENSG00000233184	ENST00000449473	KIF13B	ENSG00000197892	ENST00000523130	-0.8680	105	-	GBM
ENSG00000233184	ENST00000451213	ARF3	ENSG00000134287	ENST00000541959	-3.6250	1269	-	GBM
ENSG00000233184	ENST00000451213	ATP2A2	ENSG00000174437	ENST00000553144	-0.1015	529	-	GBM
ENSG00000233184	ENST00000451213	NOMO2	ENSG00000185164	ENST00000381474	-0.2432	470	-	GBM
ENSG00000233184	ENST00000451213	NOMO2	ENSG00000185164	ENST00000621364	-0.2432	466	-	GBM
ENSG00000233184	ENST00000451213	NOMO2	ENSG00000185164	ENST00000543392	-0.1945	110	-	GBM
ENSG00000233184	ENST00000451213	ATP6V0C	ENSG00000185883	ENST00000568562	-0.1305	408	-	GBM
ENSG00000233184	ENST00000451213	ILRUN	ENSG00000196821	ENST00000374021	-0.4288	1273	-	GBM
ENSG00000233184	ENST00000451213	KIF13B	ENSG00000197892	ENST00000523130	-1.7900	335	-	GBM

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000233184.5	ENST00000453011.4	59	123	302
ENSG00000233184.5	ENST00000446527.4	75	0	227
ENSG00000233184.5	ENST00000416329.4	84	6	260
ENSG00000233184.5	ENST00000454721.4	59	370	191
ENSG00000233184.5	ENST00000449473.2	97	596	303
ENSG00000233184.5	ENST00000451213.1	86	1014	1274

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential