 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ADAP1,SLC25A29,PGP,ABHD11,TMC4,RBM5,SMDT1,RGL3,CACFD1,TMEM50B,GPR35,CXXC5,CCDC24,CLMN,AGPAT2,GSTO2,NPRL2,SH3GLB2,ABHD14B,AP1M2,SYNE4,P4HTM,SKAP1,LLGL2,PCYT2,DEGS2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000233101 | ENSG00000073350 | LLGL2 | CESC,ESCA,KIRC,KIRP,UCS | | KIRC | | ENSG00000233101 | ENSG00000129354 | AP1M2 | CESC,ESCA,KIRC,KIRP,PAAD | | KIRC,KIRP | | ENSG00000233101 | ENSG00000165959 | CLMN | CESC,ESCA,KIRC,KIRP,UCS | | KIRC,KIRP | | ENSG00000233101 | ENSG00000168350 | DEGS2 | CESC,ESCA,KIRC,OV,PAAD | | KIRC | | ENSG00000233101 | ENSG00000065621 | GSTO2 | ESCA,KIRC,KIRP,PAAD,UCS | | KIRC |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000233101.9 | ENST00000465846.5 | 100 | 266 | 568 | | ENSG00000233101.9 | ENST00000476204.4 | 93 | 82 | 363 | | ENSG00000233101.9 | ENST00000474040.4 | 83 | 175 | 426 | | ENSG00000233101.9 | ENST00000467155.5 | 143 | 662 | 231 | | ENSG00000233101.9 | ENST00000480872.4 | 105 | 314 | 0 | | ENSG00000233101.9 | ENST00000429755.7 | 93 | 114 | 395 | | ENSG00000233101.9 | ENST00000492897.3 | 93 | 78 | 359 | | ENSG00000233101.9 | ENST00000487849.6 | 67 | 32 | 235 | | ENSG00000233101.9 | ENST00000481995.4 | 82 | 246 | 1 | | ENSG00000233101.9 | ENST00000460041.4 | 115 | 105 | 452 | | ENSG00000233101.9 | ENST00000474324.1 | 143 | 678 | 247 | | ENSG00000233101.9 | ENST00000477144.1 | 82 | 103 | 351 | | ENSG00000233101.9 | ENST00000466037.5 | 141 | 652 | 227 | | ENSG00000233101.9 | ENST00000491264.4 | 113 | 340 | 2 | | ENSG00000233101.9 | ENST00000494420.1 | 113 | 55 | 396 |
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