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lncRNA: ENSG00000232956

Summary for SNHG15

Gene summary

Gene information	Ensembl ID	ENSG00000232956
	Gene symbol	SNHG15
	Gene name	small nucleolar RNA host gene 15
	HGNC	27797
	Entrez ID	285958
	Gene type	lincRNA
	Synonyms	07p13\|SNHG15
	UniProtAcc

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Structure and expression level for SNHG15

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000232956	6.004585e+02	1.409138e+00	2.484218e-01	5.672361e+00	1.410000e-08	1.300000e-07	UP	CHOL
ENSG00000232956	1.167890e+03	1.759107e+00	1.084942e-01	1.621383e+01	4.030000e-59	1.360000e-57	UP	KIRC
ENSG00000232956	9.329212e+02	1.815172e+00	1.030279e-01	1.761825e+01	1.780000e-69	4.900000e-67	UP	COAD
ENSG00000232956	1.058392e+03	1.672129e+00	1.938179e-01	8.627319e+00	6.280000e-18	8.510000e-16	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000232956	3.383220e-01	2.616891e-03	ACC	1.082851e-02
ENSG00000232956	4.961157e-01	5.286058e-04	CHOL	1.036264e-03
ENSG00000232956	3.274816e-01	1.732401e-03	KICH	2.277839e-03
ENSG00000232956	4.663728e-01	3.667895e-34	KIRC	4.249467e-32
ENSG00000232956	3.042703e-01	2.881508e-13	PRAD	1.505128e-12

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lncRNA-Protein interaction for SNHG15

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000116560	SFPQ	25.94	92.5691	P23246	RBP,Epi	NA
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000104885	DOT1L	48.37	91.3912	Q8TEK3	TF,Epi	NA
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000154832	CXXC1	41.72	90.3529	Q9P0U4	TF,Epi	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000104885	DOT1L	32.37	91.4581	Q8TEK3	TF,Epi	NA
ENSG00000232956	ENST00000579383	SNHG15	ENSG00000155363	MOV10	61.32	91.5987	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,GSE70061;High-throughput data combine LncPro prediction
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000155363	MOV10	61.31	90.0578	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,GSE70061;High-throughput data combine LncPro prediction
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000155363	MOV10	51.15	91.7527	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,GSE70061;High-throughput data combine LncPro prediction
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000104885	DOT1L	44.03	92.9056	Q8TEK3	TF,Epi	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000172273	HINFP	12.4	90.9514	Q9BQA5	TF,Epi	ChIP-seq

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000077150	NFKB2	66.89	90.0717	Q00653	TF	NA
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000130254	SAFB2	61.69	94.5007	Q14151	TF,RBP	ENCODE,eCLIP
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000104885	DOT1L	48.37	91.5024	Q8TEK3	TF,Epi	NA
ENSG00000232956	ENST00000580528	SNHG15	ENSG00000130254	SAFB2	73.54	93.7087	Q14151	TF,RBP	ENCODE,eCLIP
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000130254	SAFB2	51.34	95.5078	Q14151	TF,RBP	ENCODE,eCLIP
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000104885	DOT1L	44.03	93.1223	Q8TEK3	TF,Epi	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000186416	NKRF	32.61	91.9547	O15226	TF	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000104885	DOT1L	32.37	91.6269	Q8TEK3	TF,Epi	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000147789	ZNF7	25.73	93.2455	P17097	TF	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000172273	HINFP	12.4	90.6709	Q9BQA5	TF,Epi	ChIP-seq
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000221944	TIGD1	5.74	90.5831	Q96MW7	TF	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000119403	PHF19	2.28	90.3	Q5T6S3	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000232956	ENST00000578968	SNHG15	ENSG00000013573	DDX11	59.64	90.2548	Q96FC9	RBP	NA
ENSG00000232956	ENST00000578968	SNHG15	ENSG00000165271	NOL6	46.51	91.2899	Q9H6R4	RBP	NA
ENSG00000232956	ENST00000584327	SNHG15	ENSG00000148840	PPRC1	11.99	91.2156	Q5VV67	RBP	Predict
ENSG00000232956	ENST00000578968	SNHG15	ENSG00000183258	DDX41	10.97	90.2419	Q9UJV9	RBP	NA
ENSG00000232956	ENST00000578968	SNHG15	ENSG00000182810	DDX28	9.35	90.5138	Q9NUL7	RBP	NA
ENSG00000232956	ENST00000580528	SNHG15	ENSG00000130254	SAFB2	73.54	94.3064	Q14151	TF,RBP	ENCODE,eCLIP
ENSG00000232956	ENST00000580528	SNHG15	ENSG00000004534	RBM6	73.45	91.8234	P78332	RBP	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000111641	NOP2	59.28	92.5306	P46087	RBP	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000130254	SAFB2	51.34	95.3225	Q14151	TF,RBP	ENCODE,eCLIP
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000155363	MOV10	51.15	91.3905	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,GSE70061;High-throughput data combine LncPro prediction
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000004534	RBM6	49.57	94.9294	P78332	RBP	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000013573	DDX11	46.93	93.7565	Q96FC9	RBP	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000071894	CPSF1	35.33	90.7692	Q10570	RBP	PAR-CLIP
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000148840	PPRC1	35.08	92.7401	Q5VV67	RBP	Predict
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000265241	RBM8A	27.1	90.3225	Q9Y5S9	RBP	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000116560	SFPQ	25.94	92.9474	P23246	RBP,Epi	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000148840	PPRC1	25.72	94.387	Q5VV67	RBP	Predict
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000176102	CSTF3	20.38	91.7078	Q12996	RBP	NA
ENSG00000232956	ENST00000438705	SNHG15	ENSG00000004534	RBM6	17.77	90.2754	P78332	RBP	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000079134	THOC1	17.6	91.1285	Q96FV9	RBP	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000148296	SURF6	15.66	92.6959	O75683	RBP	NA
ENSG00000232956	ENST00000580458	SNHG15	ENSG00000130826	DKC1	12.12	90.2783	O60832	RBP	ENCODE
ENSG00000232956	ENST00000438705	SNHG15	ENSG00000148840	PPRC1	11.78	92.1984	Q5VV67	RBP	Predict
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000184863	RBM33	11.73	92.3733	Q96EV2	RBP	Predict
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000089280	FUS	11.08	93.003	P35637	RBP	HITS-CLIP,CLIP-seq,PAR-CLIP,Scan,pipeline,widely,used,MATCH,algorithm,High-throughput data combine LncPro prediction
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000134597	RBMX2	9.91	92.7048	Q9Y388	RBP	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000204356	NELFE	8.39	92.9842	P18615	RBP	NA
ENSG00000232956	ENST00000585030	SNHG15	ENSG00000101361	NOP56	6.02	91.5443	O00567	RBP	NA
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000079134	THOC1	74.71	90.4549	Q96FV9	RBP	NA
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000130254	SAFB2	61.69	94.4929	Q14151	TF,RBP	ENCODE,eCLIP
ENSG00000232956	ENST00000579383	SNHG15	ENSG00000155363	MOV10	61.32	91.6962	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,GSE70061;High-throughput data combine LncPro prediction
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000155363	MOV10	61.31	90.2125	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,GSE70061;High-throughput data combine LncPro prediction
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000004534	RBM6	61.25	92.2823	P78332	RBP	NA
ENSG00000232956	ENST00000579383	SNHG15	ENSG00000013573	DDX11	54.26	94.0886	Q96FC9	RBP	NA
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000162231	NXF1	47.68	90.5792	Q9UBU9	RBP	NA
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000162775	RBM15	45.13	91.6988	Q96T37	RBP	ENCODE,eCLIP,iCLIP
ENSG00000232956	ENST00000579383	SNHG15	ENSG00000071894	CPSF1	40.66	90.8463	Q10570	RBP	PAR-CLIP
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000071894	CPSF1	39.08	91.8203	Q10570	RBP	PAR-CLIP
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000091127	PUS7	32.91	90.4242	Q96PZ0	RBP	NA
ENSG00000232956	ENST00000579383	SNHG15	ENSG00000176102	CSTF3	30.33	90.01799999999999	Q12996	RBP	NA
ENSG00000232956	ENST00000577700	SNHG15	ENSG00000146109	ABT1	25.68	90.0772	Q9ULW3	RBP	NA
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000184863	RBM33	18.06	90.9653	Q96EV2	RBP	Predict
ENSG00000232956	ENST00000582727	SNHG15	ENSG00000204356	NELFE	9.5	93.203	P18615	RBP	NA

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lncRNA-DNA interaction for SNHG15

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for SNHG15

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SMAD1,BBX,NFIC,IRF2,GTF2I,STAU1,NR2C2,RBM41,KLF13,KLF7,G3BP2,FOXN3

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000232956	ENST00000580528	exon_skip_446627	chr5:177491806-177491925	-29.75	-0.2755	PDLIM7	ENST00000355841	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_462673	chr6:138926400-138926481	-10.06	-0.1501	REPS1	ENST00000450536	In-frame
ENSG00000232956	ENST00000584686	exon_skip_17679	chr1:211312719-211312961	-16.93	-0.1085	RCOR3	ENST00000367005	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_44998	chr10:110132304-110132400	-15.00	-0.1667	ADD3	ENST00000356080	In-frame
ENSG00000232956	ENST00000580528	exon_skip_48713	chr10:34336198-34336243	-10.10	-0.3061	PARD3	ENST00000374789	In-frame
ENSG00000232956	ENST00000580528	exon_skip_106758	chr14:55663954-55664041	-12.52	-0.1527	KTN1	ENST00000395314	In-frame
ENSG00000232956	ENST00000580528	exon_skip_499771	chr9:128592982-128593042	-13.61	-0.2475	SPTAN1	ENST00000372731	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000232956	ENST00000580528	exon_skip_30682	chr1:151310210-151310255	-10.49	-0.3885	PI4KB	ENST00000368873	In-frame
ENSG00000232956	ENST00000580528	exon_skip_43507	chr10:84499874-84499959	-12.91	-0.1699	CCSER2	ENST00000224756	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_287874	chr17:29085603-29085648	-6.57	-0.1776	MYO18A	ENST00000527372	In-frame
ENSG00000232956	ENST00000580528	exon_skip_301267	chr19:6746028-6746196	-23.07	-0.1488	TRIP10	ENST00000313244	In-frame
ENSG00000232956	ENST00000580528	exon_skip_353131	chr20:58669290-58669453	-25.37	-0.1879	STX16	ENST00000371141	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_371367	chr3:9697710-9697866	-21.47	-0.1789	MTMR14	ENST00000296003	In-frame
ENSG00000232956	ENST00000580528	exon_skip_380242	chr3:186784961-186785101	-14.62	-0.2707	EIF4A2	ENST00000323963	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_445390	chr5:150403120-150403312	-25.91	-0.1619	CD74	ENST00000009530	In-frame
ENSG00000232956	ENST00000580528	exon_skip_514339	chrX:23713134-23713208	-8.55	-0.1171	ACOT9	ENST00000336430	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_5818	chr1:45568484-45568684	-20.88	-0.1055	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_52891	chr10:98429790-98429889	-18.04	-0.1940	HPS1	ENST00000325103,ENST00000361490	In-frame
ENSG00000232956	ENST00000580528	exon_skip_60654	chr11:64288064-64288214	-23.69	-0.1601	GPR137	ENST00000313074	In-frame
ENSG00000232956	ENST00000580528	exon_skip_75223	chr11:72012400-72012442	-8.10	-0.3522	NUMA1	ENST00000393695	In-frame
ENSG00000232956	ENST00000580528	exon_skip_83512	chr12:53505134-53505262	-20.00	-0.2000	TARBP2	ENST00000266987	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_89597	chr12:6672349-6672532	-27.30	-0.1706	ZNF384	ENST00000361959,ENST00000396801	In-frame
ENSG00000232956	ENST00000582727	exon_skip_123601	chr15:74897010-74897219	-19.22	-0.1074	MPI	ENST00000352410	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_123726	chr15:75339701-75339878	-24.92	-0.1743	COMMD4	ENST00000267935	In-frame
ENSG00000232956	ENST00000580528	exon_skip_140339	chr16:635611-635774	-26.71	-0.1746	METTL26	ENST00000301686	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_153767	chr17:48057031-48057121	-14.80	-0.1827	NFE2L1	ENST00000362042	In-frame
ENSG00000232956	ENST00000580528	exon_skip_305660	chr19:35269802-35270003	-39.40	-0.2478	USF2	ENST00000222305	In-frame
ENSG00000232956	ENST00000580528	exon_skip_307316	chr19:40622949-40623021	-16.07	-0.2232	LTBP4	ENST00000308370	In-frame
ENSG00000232956	ENST00000580528	exon_skip_382458	chr3:38131595-38131638	-6.66	-0.2562	ACAA1	ENST00000333167	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_446770	chr5:178215275-178215430	-20.34	-0.1485	PHYKPL	ENST00000308158	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_507092	chr9:127732563-127732691	-24.46	-0.1941	TOR2A	ENST00000373284	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_11029	chr1:154989559-154989707	-16.55	-0.2018	FLAD1	ENST00000292180	Frame-shift
ENSG00000232956	ENST00000582727	exon_skip_38175	chr1:234398381-234398553	-15.91	-0.1020	TARBP1	ENST00000040877	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_128982	chr15:72250844-72250954	-18.82	-0.1810	PARP6	ENST00000287196,ENST00000569795	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_290158	chr17:42953723-42953778	-8.31	-0.1731	AARSD1	ENST00000427569	Frame-shift
ENSG00000232956	ENST00000438705	exon_skip_356108	chr20:34740362-34743341	-45.59	-0.1002	NCOA6	ENST00000359003,ENST00000374796	In-frame
ENSG00000232956	ENST00000580528	exon_skip_370518	chr22:50247691-50247776	-15.05	-0.2150	HDAC10	ENST00000216271	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_470226	chr7:103307595-103307708	-11.65	-0.1120	PMPCB	ENST00000249269	Frame-shift
ENSG00000232956	ENST00000438705	exon_skip_370501	chr22:50220250-50221874	-49.89	-0.1008	TUBGCP6	ENST00000248846	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_377198	chr3:123130479-123130616	-15.52	-0.1398	PDIA5	ENST00000316218	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_446758	chr5:178212972-178213103	-18.31	-0.1398	PHYKPL	ENST00000308158	Frame-shift
ENSG00000232956	ENST00000438705	exon_skip_6457	chr1:52083339-52083541	-14.46	-0.1555	BTF3L4	ENST00000313334	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_84383	chr12:57093406-57093598	-25.39	-0.1923	NAB2	ENST00000300131	In-frame
ENSG00000232956	ENST00000580528	exon_skip_152672	chr17:42540949-42541206	-27.88	-0.1181	NAGLU	ENST00000225927	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_303345	chr19:17227839-17228005	-26.56	-0.1857	OCEL1	ENST00000215061	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_116158	chr14:102954197-102954275	-18.97	-0.2710	CDC42BPB	ENST00000361246	In-frame
ENSG00000232956	ENST00000584686	exon_skip_347925	chr2:241099395-241099894	-24.69	-0.1193	MTERF4	ENST00000391980	Frame-shift
ENSG00000232956	ENST00000580528	exon_skip_367762	chr22:21629009-21629187	-36.44	-0.2292	YDJC	ENST00000292778	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for SNHG15

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000232956.7	ENST00000577700.4	133	1719	1318
ENSG00000232956.7	ENST00000578968.4	109	2419	2748
ENSG00000232956.7	ENST00000579383.4	198	656	60
ENSG00000232956.7	ENST00000585030.4	66	199	2
ENSG00000232956.7	ENST00000580458.4	104	630	316
ENSG00000232956.7	ENST00000438705.3	67	202	2
ENSG00000232956.7	ENST00000584327.4	55	36	203
ENSG00000232956.7	ENST00000582727.1	69	207	1
ENSG00000232956.7	ENST00000584686.1	109	435	764
ENSG00000232956.7	ENST00000580528.1	47	371	514

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential