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lncRNA: ENSG00000232640

Summary for RP1-266L20.2

Gene summary

Gene information	Ensembl ID	ENSG00000232640
	Gene symbol	RP1-266L20.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP1-266L20.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000232640	5.277003e+01	-1.137937e+00	1.715350e-01	-6.633848e+00	3.270000e-11	2.150000e-10	DOWN	KICH
ENSG00000232640	1.198307e+02	-1.728186e+00	4.055087e-01	-4.261772e+00	2.030000e-05	4.788440e-04	DOWN	PCPG
ENSG00000232640	8.771501e+01	1.439727e+00	1.264142e-01	1.138896e+01	4.750000e-30	5.080000e-29	UP	LUSC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000232640	3.541018e-01	1.701254e-02	CHOL	1.882572e-02
ENSG00000232640	-6.027938e-01	4.092292e-10	KICH	3.880456e-09

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lncRNA-Protein interaction for RP1-266L20.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for RP1-266L20.2

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP1-266L20.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

ETHE1,B2M,RILP,MVP,TRPV2,AHNAK,PTAFR,IL6R,CD44,GNA15,ATP6V0E1,UPP1,FAH,MYOF

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000232640	ENST00000413088	exon_skip_330535	chr2:158676738-158676867	-14.63	-0.1420	PKP4	ENST00000389759	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000232640	ENST00000413088	exon_skip_6419	chr1:51756319-51756358	-8.98	-0.4490	OSBPL9	ENST00000428468	In-frame
ENSG00000232640	ENST00000413088	exon_skip_382458	chr3:38131595-38131638	-7.54	-0.1839	ACAA1	ENST00000333167	Frame-shift
ENSG00000232640	ENST00000413088	exon_skip_81540	chr12:42384939-42384996	-10.21	-0.1791	PPHLN1	ENST00000395568	In-frame
ENSG00000232640	ENST00000413088	exon_skip_145647	chr16:69121052-69121170	-12.58	-0.1123	CHTF8	ENST00000398235,ENST00000448552	Frame-shift
ENSG00000232640	ENST00000413088	exon_skip_319223	chr19:43526200-43526349	-16.71	-0.1316	ETHE1	ENST00000292147	Frame-shift
ENSG00000232640	ENST00000413088	exon_skip_153767	chr17:48057031-48057121	-12.38	-0.1528	NFE2L1	ENST00000362042	In-frame
ENSG00000232640	ENST00000413088	exon_skip_103741	chr13:49669776-49669846	-7.37	-0.1249	EBPL	ENST00000242827	Frame-shift
ENSG00000232640	ENST00000413088	exon_skip_304321	chr19:19501968-19502043	-18.84	-0.3193	GATAD2A	ENST00000358713,ENST00000360315	In-frame
ENSG00000232640	ENST00000413088	exon_skip_384139	chr3:49278813-49278902	-10.07	-0.2650	USP4	ENST00000265560	Frame-shift
ENSG00000232640	ENST00000413088	exon_skip_462160	chr6:127316449-127316502	-6.61	-0.1944	ECHDC1	ENST00000531967	Frame-shift
ENSG00000232640	ENST00000413088	exon_skip_11029	chr1:154989559-154989707	-15.82	-0.1329	FLAD1	ENST00000292180	Frame-shift
ENSG00000232640	ENST00000413088	exon_skip_472578	chr7:151236407-151236590	-18.42	-0.1047	CHPF2	ENST00000035307	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000232640	hsa-mir-22	ENST00000413088	chr6:169725115-169725203	175.00	-73.99	87	NA
ENSG00000232640	hsa-mir-22	ENST00000413088	chr6:169725326-169725414	171.00	-85.06	83	NA
ENSG00000232640	hsa-mir-185	ENST00000413088	chr6:169725319-169725400	169.00	-84.90	70	NA
ENSG00000232640	hsa-mir-185	ENST00000413088	chr6:169725158-169725246	154.00	-90.65	86	NA
ENSG00000232640	hsa-mir-29a	ENST00000413088	chr6:169725187-169725251	151.00	-59.45	62	NA
ENSG00000232640	hsa-mir-29b-1	ENST00000413088	chr6:169725261-169725338	184.00	-58.20	80	NA
ENSG00000232640	hsa-mir-29b-1	ENST00000413088	chr6:169725169-169725248	170.00	-73.02	78	NA
ENSG00000232640	hsa-mir-29b-1	ENST00000413088	chr6:169725415-169725492	153.00	-61.03	73	NA
ENSG00000232640	hsa-mir-29b-2	ENST00000413088	chr6:169725261-169725338	203.00	-59.13	83	NA
ENSG00000232640	hsa-mir-29b-2	ENST00000413088	chr6:169725136-169725222	149.00	-64.92	83	NA
ENSG00000232640	hsa-mir-378a	ENST00000413088	chr6:169725409-169725467	172.00	-60.37	64	NA
ENSG00000232640	hsa-mir-378a	ENST00000413088	chr6:169725299-169725370	153.00	-60.39	67	NA

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Variants for RP1-266L20.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000232640	ENST00000413088	CD44	ENSG00000026508	ENST00000526669	-0.1211	43	KICH,PCPG	-
ENSG00000232640	ENST00000413088	CD44	ENSG00000026508	ENST00000278386	-0.3463	37	KICH,PCPG	-
ENSG00000232640	ENST00000413088	UPP1	ENSG00000183696	ENST00000457596	-0.1332	118	KICH	-
ENSG00000232640	ENST00000413088	UPP1	ENSG00000183696	ENST00000421046	-0.1449	56	KICH	-
ENSG00000232640	ENST00000413088	UPP1	ENSG00000183696	ENST00000395564	-0.2118	246	KICH	-
ENSG00000232640	ENST00000413088	UPP1	ENSG00000183696	ENST00000444999	-0.1121	188	KICH	-
ENSG00000232640	ENST00000413088	RILP	ENSG00000167705	ENST00000574810	-0.1749	175	KICH	LUSC
ENSG00000232640	ENST00000413088	RILP	ENSG00000167705	ENST00000301336	-0.1749	175	KICH	LUSC
ENSG00000232640	ENST00000413088	B2M	ENSG00000166710	ENST00000561424	-0.1035	106	KICH	LUSC
ENSG00000232640	ENST00000413088	B2M	ENSG00000166710	ENST00000557901	-0.2000	1	KICH	LUSC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000232640	RP1-266L20.2,hsa-mir-22,WDR33	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,E2F5	SKCM,KICH,TGCT,CHOL,LGG
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ZNF22	SKCM,KICH,TGCT,CHOL,LGG
ENSG00000232640	RP1-266L20.2,hsa-mir-22,MED30	SKCM,KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RXRB	SKCM,KICH,TGCT,CHOL,LGG
ENSG00000232640	RP1-266L20.2,hsa-mir-22,DDX42	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ATAT1	SKCM,KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,USP21	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,YTHDC1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,SFPQ	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,NRF1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RIOK1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,PM20D2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ZNF7	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,BRD2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,NAA16	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,CPSF6	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,FAM117B	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,KLHL23	SKCM,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,UNK	UCEC,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RPL23A	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,NCOA5	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,SRSF3	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,EHMT2	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,SRSF6	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RBM4B	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,H1-0	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,EXOSC2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,PDE9A	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,VEZF1	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,PAXBP1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,LUC7L3	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,DEK	SKCM,KICH,TGCT,CHOL,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ING5	UCEC,SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,CLK2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,DHX9	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,IRF2BP2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,SNRNP48	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,PCID2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,KHDC4	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,CEP95	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,NOB1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,MBTD1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ACVR2A	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,TIA1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RBBP6	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,CTPS2	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,EPC2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,TRIM13	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,POLG2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,NONO	SKCM,KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,SMARCC1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RBMX	UCEC,SKCM,KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,FBXO46	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RPS27A	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RPS10	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RBM5	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RCOR3	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RGL2	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,BTF3	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,CHTOP	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,PCIF1	UCEC,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,TFAP4	UCEC,SKCM,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,POGZ	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RPS11	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,CTDSPL2	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,PRR3	SKCM,KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,KDM5B	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ING4	SKCM,KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RPL7L1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,SOX4	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,MTA1	SKCM,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,PRPF39	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,WBP1	KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ZBTB5	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,EEF1A1	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,SMAD4	SKCM,KICH,TGCT,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,ZNF16	UCEC,SKCM,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,BPTF	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-22,RPS8	SKCM,KICH,CHOL,LGG,LIHC
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-1,ATAT1	SKCM,KICH,TGCT,CHOL,LGG
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-1,HDAC2	KICH,CESC,TGCT,LGG,MESO
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-1,PTK7	SKCM,KICH,TGCT,CHOL,LGG,MESO
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-1,UBTD2	SKCM,KICH,CESC,TGCT,CHOL,LGG,MESO
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-1,CDK19	KICH,CESC,TGCT,CHOL,MESO
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-1,NREP	SKCM,KICH,CESC,TGCT,CHOL,MESO
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-1,GPX7	SKCM,KICH,TGCT,CHOL,MESO
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-2,NREP	SKCM,KICH,CESC,TGCT,CHOL
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-2,UBTD2	KICH,CESC,TGCT,CHOL,LGG
ENSG00000232640	RP1-266L20.2,hsa-mir-29b-2,PTK7	SKCM,KICH,TGCT,CHOL,LGG
ENSG00000232640	RP1-266L20.2,hsa-mir-185,MAML2	SKCM,KICH,TGCT,LGG,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,SMARCE1	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,TASOR	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,VMAC	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,ARID4B	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,FAM228B	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,SMAD4	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,DENND6A	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,NUMA1	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,CHST14	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,WBP1	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,CNP	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,ATAT1	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,BAZ2B	TGCT,CHOL,ACC,GBM,KIRP
ENSG00000232640	RP1-266L20.2,hsa-mir-378a,PIGM	TGCT,CHOL,ACC,GBM,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000232640.1	ENST00000413088.1	159	19	498

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential