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lncRNA: ENSG00000232533

Summary for AC093673.5

Gene summary

Gene information	Ensembl ID	ENSG00000232533
	Gene symbol	AC093673.5
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for AC093673.5

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000232533	8.202449e+02	1.489975e+00	3.577061e-01	4.165361e+00	3.110000e-05	1.766580e-04	UP	GBM
ENSG00000232533	3.617254e+02	-1.972855e+00	4.622664e-01	-4.267789e+00	1.970000e-05	3.161620e-04	DOWN	CESC
ENSG00000232533	7.851481e+02	1.574949e+00	1.528090e-01	1.030665e+01	6.580000e-25	2.640000e-23	UP	KIRP
ENSG00000232533	2.101256e+02	-1.246684e+00	1.380116e-01	-9.033185e+00	1.670000e-19	2.610000e-18	DOWN	UCEC
ENSG00000232533	2.971454e+02	1.030093e+00	2.897701e-01	3.554863e+00	3.781760e-04	3.677805e-03	UP	ESCA

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000232533	4.065536e-01	5.583018e-03	CHOL	7.157497e-03
ENSG00000232533	-4.018391e-01	9.492244e-05	KICH	1.610684e-04
ENSG00000232533	-3.022091e-01	7.320763e-14	UCEC	5.199794e-13

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lncRNA-Protein interaction for AC093673.5

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000232533	ENST00000429630	AC093673.5	ENSG00000106624	AEBP1	48.71	91.0681	Q8IUX7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for AC093673.5

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for AC093673.5

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,ASB8,NF1,RALGPS1,PBLD,CMTM4,ZFP14,HACD3,RFX7,NT5C2,ZMYND11,TCF20,DNAJC16,STX17,EPB41,UBR1,PI4KA,LRBA,UBXN7,KIAA1109,PTPN11,KAT6B,TBC1D15,ZNF17,SMG1,MANEA,PBRM1,ERBIN,PUM1,NR2C2,SEC24B,AP1AR,L2HGDH,KMT2D,PIK3C3,NBR1,PHKB,PDPK1,RAPGEF2,C5orf24,MFSD6,ACBD5,MON2,CEP120,PHF3,PMS2,BBX,CPEB4,STRN,TP53BP1,WDR48,PTPN4,DDI2,ACO2,PPIP5K2,TTC3,LYRM7,ABRAXAS1,CLCN3,CIPC,RAD50,BCKDHA,TRPM7,BPTF,ARHGAP5,ITSN2,ASXL2,THAP6,RNF169,MAST3,USP30,KLHL24,FRYL,BAZ2A,CEP350,PIKFYVE,MKRN2,TNKS,SATB1,KBTBD4,CERT1,WDR7,USP46,SMG6,PHC3,MBD5,TMLHE,KIAA0232,DDB1,SIK3,ST13,SYNJ1,PPARA,GFM2,GPATCH8,GTF2A1,ALDH5A1,MPHOSPH8,REST,SMAD5,CNOT6L,HBP1,CSNK1A1,LARS2,CDC23,GOSR1,HUWE1,ATP8A1,HEATR5B,WAC,ACADM,PPM1A,BIRC6,POLK,AFF1,MECP2,GCC2,CHD6,SLC25A30,TLK1,BDP1,SYNRG,TMEM135,AKAP1,CCDC186,KLHL23,SPG11,HDHD2,NEMF,ZHX1,FYCO1,RPRD1A,GCFC2,LANCL1,RALGAPA1,NDUFS1,NSD1,GRAMD1B,SCAF11

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000232533	ENST00000429630	exon_skip_287874	chr17:29085603-29085648	-9.01	-0.2371	MYO18A	ENST00000527372	In-frame
ENSG00000232533	ENST00000429630	exon_skip_470719	chr7:117134123-117134192	-7.73	-0.2274	ST7	ENST00000265437	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000232533	ENST00000429630	exon_skip_153096	chr17:44074968-44075087	-17.85	-0.1750	G6PC3	ENST00000269097	Frame-shift
ENSG00000232533	ENST00000429630	exon_skip_299306	chr18:50274185-50274353	-29.98	-0.1972	MBD1	ENST00000269468,ENST00000382948,ENST00000591416	In-frame
ENSG00000232533	ENST00000429630	exon_skip_95500	chr12:96003837-96003920	-8.52	-0.1217	LTA4H	ENST00000228740	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000232533	hsa-mir-874	ENST00000429630	chr7:143379730-143379810	174.00	-88.45	79	NA
ENSG00000232533	hsa-mir-874	ENST00000429630	chr7:143379878-143379946	155.00	-70.93	76	NA
ENSG00000232533	hsa-mir-874	ENST00000429630	chr7:143379961-143380043	147.00	-72.95	77	NA
ENSG00000232533	hsa-mir-874	ENST00000429630	chr7:143380205-143380287	140.00	-61.13	82	NA

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Variants for AC093673.5

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000232533	ENST00000429630	L2HGDH	ENSG00000087299	ENST00000261699	-0.1750	226	CESC	KIRP
ENSG00000232533	ENST00000429630	L2HGDH	ENSG00000087299	ENST00000555423	-0.2164	297	CESC	KIRP
ENSG00000232533	ENST00000429630	ACO2	ENSG00000100412	ENST00000216254	-0.1320	1	-	GBM,ESCA
ENSG00000232533	ENST00000429630	ACO2	ENSG00000100412	ENST00000396512	-0.1320	1	-	GBM,ESCA
ENSG00000232533	ENST00000429630	PBLD	ENSG00000108187	ENST00000468798	-0.1417	1	-	KIRP,ESCA
ENSG00000232533	ENST00000429630	ACADM	ENSG00000117054	ENST00000420607	-0.1625	81	-	KIRP
ENSG00000232533	ENST00000429630	ACADM	ENSG00000117054	ENST00000528016	-0.1024	22	-	KIRP
ENSG00000232533	ENST00000429630	GRAMD1B	ENSG00000023171	ENST00000456860	-0.3144	48	-	GBM,KIRP
ENSG00000232533	ENST00000429630	GRAMD1B	ENSG00000023171	ENST00000322282	-0.3430	148	-	GBM,KIRP
ENSG00000232533	ENST00000429630	MPHOSPH8	ENSG00000196199	ENST00000414242	-0.1058	67	-	GBM
ENSG00000232533	ENST00000429630	ZMYND11	ENSG00000015171	ENST00000509513	-0.1341	34	-	GBM
ENSG00000232533	ENST00000429630	ZMYND11	ENSG00000015171	ENST00000602682	-0.1632	50	-	GBM
ENSG00000232533	ENST00000429630	ZMYND11	ENSG00000015171	ENST00000558098	-0.1341	34	-	GBM
ENSG00000232533	ENST00000429630	PTPN4	ENSG00000088179	ENST00000431283	-0.4170	313	-	GBM,KIRP
ENSG00000232533	ENST00000429630	PTPN4	ENSG00000088179	ENST00000441089	-1.3100	223	-	GBM,KIRP
ENSG00000232533	ENST00000429630	WAC	ENSG00000095787	ENST00000428935	-0.1322	1	-	GBM
ENSG00000232533	ENST00000429630	MAST3	ENSG00000099308	ENST00000609494	-0.2123	54	-	GBM
ENSG00000232533	ENST00000429630	RAPGEF2	ENSG00000109756	ENST00000512056	-0.1080	434	-	GBM
ENSG00000232533	ENST00000429630	STRN	ENSG00000115808	ENST00000379213	-0.1811	506	-	GBM
ENSG00000232533	ENST00000429630	ATP8A1	ENSG00000124406	ENST00000515872	-0.2932	600	-	GBM,ESCA
ENSG00000232533	ENST00000429630	RALGPS1	ENSG00000136828	ENST00000394022	-0.1129	4	-	GBM
ENSG00000232533	ENST00000429630	RALGPS1	ENSG00000136828	ENST00000394011	-0.1121	1	-	GBM
ENSG00000232533	ENST00000429630	MFSD6	ENSG00000151690	ENST00000412482	-0.1069	374	CESC	GBM
ENSG00000232533	ENST00000429630	CMTM4	ENSG00000183723	ENST00000394106	-0.1208	1	-	GBM,KIRP,ESCA
ENSG00000232533	ENST00000429630	ITSN2	ENSG00000198399	ENST00000449392	-0.1426	61	-	GBM
ENSG00000232533	ENST00000429630	HEATR5B	ENSG00000008869	ENST00000425467	-0.1335	19	-	GBM
ENSG00000232533	ENST00000429630	HACD3	ENSG00000074696	ENST00000565299	-0.1601	119	-	KIRP
ENSG00000232533	ENST00000429630	WDR7	ENSG00000091157	ENST00000589935	-0.1505	65	-	GBM
ENSG00000232533	ENST00000429630	WDR7	ENSG00000091157	ENST00000591449	-0.1299	1	-	GBM
ENSG00000232533	ENST00000429630	USP46	ENSG00000109189	ENST00000508499	-0.2505	541	-	GBM,KIRP
ENSG00000232533	ENST00000429630	USP46	ENSG00000109189	ENST00000512656	-0.1820	87	-	GBM,KIRP
ENSG00000232533	ENST00000429630	LANCL1	ENSG00000115365	ENST00000453956	-0.1091	1	-	GBM
ENSG00000232533	ENST00000429630	DNAJC16	ENSG00000116138	ENST00000472665	-0.1518	374	-	KIRP
ENSG00000232533	ENST00000429630	GCC2	ENSG00000135968	ENST00000614209	-0.9017	234	-	GBM
ENSG00000232533	ENST00000429630	KIAA1109	ENSG00000138688	ENST00000442707	-0.3040	358	-	GBM
ENSG00000232533	ENST00000429630	PDPK1	ENSG00000140992	ENST00000441549	-0.1253	23	-	GBM
ENSG00000232533	ENST00000429630	PDPK1	ENSG00000140992	ENST00000492021	-0.1161	1	-	GBM
ENSG00000232533	ENST00000429630	PDPK1	ENSG00000140992	ENST00000389224	-0.2048	51	-	GBM
ENSG00000232533	ENST00000429630	KMT2D	ENSG00000167548	ENST00000526209	-0.1570	125	-	GBM
ENSG00000232533	ENST00000429630	KIAA0232	ENSG00000170871	ENST00000508423	-0.1750	8	-	GBM
ENSG00000232533	ENST00000429630	TTC3	ENSG00000182670	ENST00000540756	-2.4750	147	-	GBM
ENSG00000232533	ENST00000429630	TTC3	ENSG00000182670	ENST00000428693	-0.3868	249	-	GBM
ENSG00000232533	ENST00000429630	LYRM7	ENSG00000186687	ENST00000507584	-0.1048	65	-	KIRP
ENSG00000232533	ENST00000429630	CIPC	ENSG00000198894	ENST00000555437	-0.1514	83	-	GBM,KIRP
ENSG00000232533	ENST00000429630	CIPC	ENSG00000198894	ENST00000555611	-0.1450	71	-	GBM,KIRP

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000232533.1	ENST00000429630.1	32	5	103

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential