 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TLE4,SNRK,ACVRL1,PGPEP1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000232445 | ENST00000419422 | exon_skip_44853 | chr10:104010815-104010908 | -9.30 | -0.1045 | SLK | ENST00000369755 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_98384 | chr12:124327408-124327633 | -28.12 | -0.1435 | NCOR2 | ENST00000405201 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_114200 | chr14:73279280-73279424 | -14.90 | -0.1064 | NUMB | ENST00000355058,ENST00000555238 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_148110 | chr17:4892401-4892512 | -19.24 | -0.1943 | MINK1 | ENST00000355280 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_423795 | chr4:55888887-55888932 | -7.89 | -0.2545 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_132443 | chr16:2077597-2077726 | -15.07 | -0.1383 | TSC2 | ENST00000219476 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000232445 | ENST00000419422 | exon_skip_30682 | chr1:151310210-151310255 | -7.82 | -0.4888 | PI4KB | ENST00000368873 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_33516 | chr1:156938417-156938513 | -14.50 | -0.1611 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_43507 | chr10:84499874-84499959 | -14.39 | -0.1869 | CCSER2 | ENST00000224756 | Frame-shift | | ENSG00000232445 | ENST00000419422 | exon_skip_382356 | chr3:37091466-37091538 | -9.73 | -0.1544 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000232445 | ENST00000419422 | exon_skip_515330 | chrX:65524563-65524614 | -9.18 | -0.2295 | LAS1L | ENST00000374811 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000232445 | ENST00000419422 | TLE4 | ENSG00000106829 | ENST00000265284 | -0.1329 | 184 | - | BLCA,UCEC,BRCA,STAD | | ENSG00000232445 | ENST00000419422 | ACVRL1 | ENSG00000139567 | ENST00000388922 | -0.1532 | 52 | - | BLCA,UCEC,LUSC,BRCA,LUAD,COAD,READ | | ENSG00000232445 | ENST00000419422 | ACVRL1 | ENSG00000139567 | ENST00000552678 | -0.1539 | 48 | - | BLCA,UCEC,LUSC,BRCA,LUAD,COAD,READ |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000232445.1 | ENST00000419422.1 | 133 | 300 | 701 |
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