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lncRNA: ENSG00000231889

Summary for TRAF3IP2-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000231889
	Gene symbol	TRAF3IP2-AS1
	Gene name	TRAF3IP2 antisense RNA 1
	HGNC	40005
	Entrez ID	643749
	Gene type	antisense
	Synonyms	06q21\|TRAF3IP2-AS1
	UniProtAcc

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Structure and expression level for TRAF3IP2-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000231889	2.716861e+02	1.054108e+00	2.456582e-01	4.290954e+00	1.780000e-05	4.284900e-04	UP	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for TRAF3IP2-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231889	ENST00000449449	TRAF3IP2-AS1	ENSG00000032219	ARID4A	51.92	90.2618	P29374	Epi	NA
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000118058	KMT2A	104.54	94.2064	Q03164	TF,Epi	ChIP-seq
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000120616	EPC1	59.07	93.1264	Q9H2F5	Epi	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000146247	PHIP	37.41	96.1876	Q8WWQ0	Epi	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000118058	KMT2A	35.23	93.9761	Q03164	TF,Epi	ChIP-seq
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000101126	ADNP	66.61	96.0612	Q9H2P0	TF,Epi	ChIP-seq
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000121741	ZMYM2	25.25	96.9685	Q9UBW7	Epi	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000143815	LBR	6.78	93.192	Q14739	Epi	NA
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000116539	ASH1L	89.0	93.0773	Q9NR48	TF,Epi	NA
ENSG00000231889	ENST00000525151	TRAF3IP2-AS1	ENSG00000181555	SETD2	62.16	94.1504	Q9BYW2	Epi	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000032219	ARID4A	37.77	93.7167	P29374	Epi	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000189079	ARID2	22.64	92.2843	Q68CP9	TF,Epi	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000116560	SFPQ	17.01	91.1533	P23246	RBP,Epi	CLIP,eCLIP
ENSG00000231889	ENST00000449449	TRAF3IP2-AS1	ENSG00000146247	PHIP	51.76	90.8765	Q8WWQ0	Epi	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000112983	BRD8	100.88	92.2482	Q9H0E9	Epi	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000181555	SETD2	67.99	98.2284	Q9BYW2	Epi	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000116539	ASH1L	59.05	95.7439	Q9NR48	TF,Epi	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000185619	PCGF3	19.92	92.913	Q3KNV8	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000118058	KMT2A	35.23	93.6849	Q03164	TF,Epi	ChIP-seq
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000181827	RFX7	30.28	91.5252	Q2KHR2	TF	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000167232	ZNF91	22.96	91.0594	Q05481	TF	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000189079	ARID2	22.64	91.8241	Q68CP9	TF,Epi	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000148516	ZEB1	18.13	90.7216	P37275	TF	ChIP-seq
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000198040	ZNF84	16.97	90.6095	P51523	TF	NA
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000096401	CDC5L	14.12	90.2346	Q99459	TF,RBP	NA
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000025156	HSF2	13.04	90.9875	Q03933	TF	NA
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000167232	ZNF91	7.24	92.7855	Q05481	TF	NA
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000198521	ZNF43	6.9	91.3203	P17038	TF	NA
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000118058	KMT2A	104.54	94.2568	Q03164	TF,Epi	ChIP-seq
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000116539	ASH1L	89.0	93.1756	Q9NR48	TF,Epi	NA
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000168795	ZBTB5	43.19	93.413	O15062	TF	NA
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000186660	ZFP91	6.15	92.3372	Q96JP5	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000096401	CDC5L	82.85	96.7684	Q99459	TF,RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000135164	DMTF1	74.92	95.2387	Q9Y222	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000101126	ADNP	66.61	96.2781	Q9H2P0	TF,Epi	ChIP-seq
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000181827	RFX7	64.39	95.4303	Q2KHR2	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000116539	ASH1L	59.05	95.9616	Q9NR48	TF,Epi	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000189308	LIN54	54.84	93.426	Q6MZP7	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000167232	ZNF91	45.03	97.5836	Q05481	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000198521	ZNF43	44.28	96.3251	P17038	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000236287	ZBED5	37.21	95.169	Q49AG3	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000124459	ZNF45	34.63	96.6808	Q02386	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000025156	HSF2	34.49	96.9968	Q03933	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000198040	ZNF84	33.38	96.2153	P51523	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000120784	ZFP30	26.1	94.8877	Q9Y2G7	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000168795	ZBTB5	26.06	92.8945	O15062	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000204231	RXRB	25.69	95.6251	P28702	TF	Predict
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000142065	ZFP14	25.47	91.9543	Q9HCL3	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000062194	GPBP1	20.39	94.0201	Q86WP2	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000184517	ZFP1	18.19	94.0499	Q6P2D0	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000095574	IKZF5	16.61	95.094	Q9H5V7	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000118922	KLF12	16.28	95.3949	Q9Y4X4	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000109381	ELF2	14.75	92.0395	Q15723	TF	ChIP-seq
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000120798	NR2C1	14.36	95.3134	P13056	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000105750	ZNF85	11.91	96.6061	Q03923	TF	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000177463	NR2C2	9.32	95.1165	P49116	TF	ChIP-seq
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000146757	ZNF92	9.14	96.3715	Q03936	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000056097	ZFR	97.15	93.9899	Q96KR1	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000096401	CDC5L	82.85	96.649	Q99459	TF,RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000213079	SCAF8	65.58	96.8857	Q9UPN6	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000091009	RBM27	56.18	97.4934	Q9P2N5	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000139746	RBM26	55.47	97.394	Q5T8P6	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000173933	RBM4	52.48	90.3963	Q9BWF3	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000055917	PUM2	50.38	91.8512	Q8TB72	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000173914	RBM4B	45.49	92.3574	Q9BQ04	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000129317	PUS7L	44.73	96.5025	Q9H0K6	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000100201	DDX17	43.37	94.0001	Q92841	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000135870	RC3H1	41.23	95.2117	Q5TC82	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000124193	SRSF6	38.0	96.8149	Q13247	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000147274	RBMX	17.61	94.1352	P38159	RBP	NA
ENSG00000231889	ENST00000532226	TRAF3IP2-AS1	ENSG00000111364	DDX55	15.47	95.0263	Q8NHQ9	RBP	NA
ENSG00000231889	ENST00000438298	TRAF3IP2-AS1	ENSG00000056097	ZFR	130.29	90.8864	Q96KR1	RBP	NA
ENSG00000231889	ENST00000607066	TRAF3IP2-AS1	ENSG00000149532	CPSF7	4.65	91.8756	Q8N684	RBP	PAR-CLIP
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000213079	SCAF8	31.01	95.1949	Q9UPN6	RBP	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000114127	XRN1	30.43	90.687	Q8IZH2	RBP	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000135870	RC3H1	20.52	93.0853	Q5TC82	RBP	NA
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000114127	XRN1	10.76	91.4345	Q8IZH2	RBP	NA
ENSG00000231889	ENST00000456352	TRAF3IP2-AS1	ENSG00000089280	FUS	10.06	90.1675	P35637	RBP	HITS-CLIP,CLIP-seq,PAR-CLIP
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000091009	RBM27	9.73	92.3609	Q9P2N5	RBP	NA
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000139746	RBM26	9.61	93.9596	Q5T8P6	RBP	NA
ENSG00000231889	ENST00000420651	TRAF3IP2-AS1	ENSG00000129317	PUS7L	7.02	90.6469	Q9H0K6	RBP	NA

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lncRNA-DNA interaction for TRAF3IP2-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

CASTOR3,GOPC,RARS2,REPS1,ATAT1,HACE1,XRN1,CEP76,GNE,RBM39,KLF12,TADA1,LCORL,STAG1,CEP57,N4BP2,NRF1,MED13L,POLH,GPC2,CEP57L1,KAT7,ARID2,CCNC,DMTF1,SLF2,RSBN1,KATNBL1,RBM27,PHF10,CLASP1,ZNF24,TBP,IKZF5,DDX55,WDCP,NHLRC2,ZBTB5,EFCAB7,MARCHF7,ZFP14,BCLAF1,PPP4R3B,CCDC14,RNF38,DDX59,CLK4,LBR,DCAF16,ZUP1,ZBED5,SETD2,OSGEPL1,RBM4,MPHOSPH9,CCNT2,CREB1,SNRNP48,GKAP1,RC3H1,PTCD3,ORC3,FAM76B,TRIM13,ZNF91,ZFP91,UFL1,TRIM23,RBMX,RBM4B,USP49,RBM26,SACS,ZFP1,RBM14,H2AZ2,ADNP,C12orf65,MYEF2,PPIL4,PUS7L,ASH1L,ARID1B,FBXO5,PKIA,ZFP30,PRIMPOL,SP4,CPSF7,KANSL1L,BBIP1,LIN54,LIN9,THAP9,DDX6,PRPF39,GABPB1,ABHD18,RPAIN,DDX17,REV3L,SMCHD1,RFX7,EPC1,SENP7,UBTD2,RSBN1L,ZNF22,HCFC2,MEX3B,CTDSPL2,TTC21B,CEP44,CENPC,SDR39U1,ARGLU1,RAB2B,LIN52,RNGTT,EIF2A,PAXBP1,RAD21,ANKRA2,FNBP4,C2orf49,PAIP1,PHIP,ZNF45,FCHSD2,YTHDC1,TOPBP1,NSD2,MED23,DNAJC18,TIA1,LRRC37B,FYN,HDAC2,MIER3,ZFR,STRADA,ZNF8,NR2C2,APPBP2,GPBP1,MRE11,ALG9,SMARCAD1,TRMT13,CDK19,CCDC82,ZCCHC10,ARID4A,PUM2,XPO1,MARCHF5,RBM5,ELF2,LYRM7,SMAD4,NKTR,MBTD1,ZNF43,ZFP28,PNN,SP3,DNASE1,COA5,BRD8,CRBN,BMT2,TUBE1,ARHGEF7,CEP170,ZNF84,KLHL23,KATNA1,RXRB,CEP192,BICRAL,WDR27,FBXO30,KMT2A,TPP2,TRA2B,MTRF1L,KLHL8,KHDC4,NR2C1,PNISR,SFPQ,USP45,PRPF4B,RBM33,ATF2,ATAD2B

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

RBM27,LYRM2,FBXO5,GABPB1,GTF2H4,ZCCHC10,RFX7,OSGEPL1,SETD2,RBMX,APPBP2,DDX6,PPIL4,RARS2,RSBN1L,LIN54,SIRT1,EPC1,ORC3,CASP8AP2,TBP,DDX17,ZFP14,KANSL1L,TIA1,RBM5,ZFR,KPNA5,FYN,NR2C2,AGO4,ZUFSP,RIF1,KMT2A,CCNG2,ZFP91,ARID2,GNE,LCORL,DDX59,BRD8,SDR39U1,GLTSCR1L,CCDC66,DNAJC18,PPM1D,TOPBP1,ASH1L,REV3L,KLHL8,ZNF45,KIAA0907,STRADA,MPHOSPH9,CLASP1,UBTD2,ZFP30,N4BP2,HSF2,RAD21,NRF1,LIN52,CPSF7,H2AFV,ARGLU1,GOPC,MDM4,RBM4

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for TRAF3IP2-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CEBPB,S100A11,F11R,KIAA0930,LTBR,RPS6KA4,CTSB,SLC10A3,ANXA2,PLBD2,TWF2,RIN1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for TRAF3IP2-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_172106	ENSG00000231889.6	chr6	111488008	+	antisense	TRAF3IP2-AS1	ENST00000532353.1	antisense	TRAF3IP2-AS1-005
LncEditing_172126	ENSG00000231889.6	chr6	111488062	+	antisense	TRAF3IP2-AS1	ENST00000532353.1	antisense	TRAF3IP2-AS1-005
LncEditing_172136	ENSG00000231889.6	chr6	111488063	+	antisense	TRAF3IP2-AS1	ENST00000532353.1	antisense	TRAF3IP2-AS1-005
LncEditing_172226	ENSG00000231889.6	chr6	111489246	+	antisense	TRAF3IP2-AS1	ENST00000532353.1	antisense	TRAF3IP2-AS1-005
LncEditing_172236	ENSG00000231889.6	chr6	111489251	+	antisense	TRAF3IP2-AS1	ENST00000532353.1	antisense	TRAF3IP2-AS1-005
LncEditing_172246	ENSG00000231889.6	chr6	111489252	+	antisense	TRAF3IP2-AS1	ENST00000532353.1	antisense	TRAF3IP2-AS1-005

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000231889	LncEditing_172106	LAML	chr6_111488008_+	3.861142e+00	3.219173e+00	3.811883e+00	2.363843e+00	1.808645e-02	1.938956e-02	UP
ENSG00000231889	LncEditing_172126	LAML	chr6_111488062_+	3.800650e+00	2.888515e+00	2.525773e+00	4.512872e+00	6.395559e-06	1.278077e-05	UP
ENSG00000231889	LncEditing_172136	LAML	chr6_111488063_+	3.848756e+00	2.983495e+00	2.721913e+00	4.748595e+00	2.048345e-06	4.541663e-06	UP
ENSG00000231889	LncEditing_172226	LAML	chr6_111489246_+	4.357570e+00	3.074821e+00	1.987987e+00	4.495623e+00	6.936653e-06	1.379512e-05	UP
ENSG00000231889	LncEditing_172236	LAML	chr6_111489251_+	3.868086e+00	3.213501e+00	3.738684e+00	2.148745e+00	3.165464e-02	3.255077e-02	UP
ENSG00000231889	LncEditing_172246	LAML	chr6_111489252_+	4.195934e+00	3.115466e+00	2.328052e+00	3.837361e+00	1.243634e-04	1.919860e-04	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000231889	LncEditing_172126	-3.309512e-01	6.642923e-03	1.602777e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000231889	ENSG00000025156	HSF2	ENSG00000083099	LYRM2	5	GBM,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000104064	GABPB1	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000181827	RFX7	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000181827	RFX7	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000147274	RBMX	5	GBM,LAML,LGG,PCPG,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000147274	RBMX	5	GBM,LAML,LGG,PCPG,THYM
ENSG00000231889	ENSG00000168795	ZBTB5	ENSG00000062725	APPBP2	5	GBM,LAML,LGG,SARC,TGCT
ENSG00000231889	ENSG00000181827	RFX7	ENSG00000110367	DDX6	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000110367	DDX6	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000110367	DDX6	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000025156	HSF2	ENSG00000146282	RARS2	5	GBM,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000025156	HSF2	ENSG00000187257	RSBN1L	5	GBM,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000187257	RSBN1L	6	GBM,LAML,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000187257	RSBN1L	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000187257	RSBN1L	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000025156	HSF2	ENSG00000120616	EPC1	5	GBM,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000120616	EPC1	6	GBM,LAML,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000168795	ZBTB5	ENSG00000120616	EPC1	5	GBM,LAML,LGG,SARC,TGCT
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000120616	EPC1	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000118412	CASP8AP2	5	LAML,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000100201	DDX17	5	LAML,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000142065	ZFP14	5	GBM,LAML,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000142065	ZFP14	5	GBM,LAML,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000144445	KANSL1L	5	GBM,LAML,SARC,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000116001	TIA1	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000116001	TIA1	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000116001	TIA1	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000003756	RBM5	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000025156	HSF2	ENSG00000196911	KPNA5	5	GBM,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000196911	KPNA5	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000095574	IKZF5	ENSG00000177463	NR2C2	5	LGG,PCPG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000177463	NR2C2	5	LAML,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000181827	RFX7	ENSG00000177463	NR2C2	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000177463	NR2C2	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000177463	NR2C2	5	LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000025156	HSF2	ENSG00000153975	ZUP1	5	GBM,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000189079	ARID2	5	GBM,LAML,LGG,PCPG,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000178177	LCORL	5	GBM,LAML,LGG,PCPG,THYM
ENSG00000231889	ENSG00000189079	ARID2	ENSG00000178177	LCORL	5	GBM,LAML,LGG,PCPG,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000112983	BRD8	5	GBM,LAML,LGG,SARC,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000009413	REV3L	5	GBM,LAML,LGG,SARC,TGCT
ENSG00000231889	ENSG00000168795	ZBTB5	ENSG00000009413	REV3L	5	GBM,LAML,LGG,SARC,TGCT
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000106459	NRF1	6	GBM,LAML,LGG,PCPG,TGCT,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000106459	NRF1	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000134884	ARGLU1	5	GBM,LAML,LGG,SARC,THYM
ENSG00000231889	ENSG00000236287	ZBED5	ENSG00000134884	ARGLU1	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000025156	HSF2	ENSG00000047932	GOPC	5	GBM,LGG,SARC,TGCT,THYM
ENSG00000231889	ENSG00000135164	DMTF1	ENSG00000047932	GOPC	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000047932	GOPC	5	GBM,LAML,LGG,TGCT,THYM
ENSG00000231889	ENSG00000198521	ZNF43	ENSG00000173933	RBM4	5	GBM,LAML,LGG,PCPG,THYM

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000231889.6	ENST00000532226.1	72	120	338
ENSG00000231889.6	ENST00000525151.4	99	404	703
ENSG00000231889.6	ENST00000438298.5	94	37	321
ENSG00000231889.6	ENST00000442928.5	85	331	588
ENSG00000231889.6	ENST00000532353.1	75	322	546
ENSG00000231889.6	ENST00000420651.2	116	410	60
ENSG00000231889.6	ENST00000449449.5	55	224	57
ENSG00000231889.6	ENST00000456352.2	85	428	685
ENSG00000231889.6	ENST00000440001.2	94	89	373
ENSG00000231889.6	ENST00000440395.1	90	219	491
ENSG00000231889.6	ENST00000606892.1	77	207	437
ENSG00000231889.6	ENST00000607066.1	85	238	495

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential