 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | UXT,TCEA2,IFT22,TMEM234,C12orf57,CIRBP,NUDT18,PSMB7,PET100,DAPK3,SART1,C1orf56,QPCTL,CACFD1,QPRT,RPS27A,XAB2,TRAPPC12,LRRC61,PNKD,NDUFB9,NDUFA11,WDR54,DTYMK,TRAPPC2L,LIMS2,FAAP20,SF3A3,SURF2,EIF3G,PMM1,EBNA1BP2,RAB34,CCDC8,PAF1,COG4,SVBP,SUGP1,SIGIRR,FAM104B,C19orf44,PSMD13,UBAC2,USE1,PITHD1,TMEM198,SDF2,RAB4B,UQCC2,CA11,ILKAP,LYRM4,CISD3,SLC22A17,PSENEN,SSU72,CHKB,UROD,TMEM39B,SNHG32,CBY1,ABHD14B,WDR83,AGBL5,MAD1L1,RAB3IL1,ANKRD39,DHPS,SNX8,GPR137,ACYP1,MON1A,PIH1D1,RBM38,FBXO17,CDKN2AIPNL,DDX49,LMAN2L,ALKBH2,RPL35,NDUFA2,BORCS6,MIIP,LPAR2,ATP5PD,FDX2,MCAT,CYBA,FUZ,ESS2,TOP1MT,PRPF38A,PSMB3,MTLN,TSEN54,FAM229B,ZNF593,IPO13,TOE1,CENPM,PAFAH1B3,CHST10,MED8,CBX6,PFDN5,CCDC159,CCDC167,HMGN3,AATF,P3H4,CZIB,ACOT8,HDDC2,HDAC5,RPA3,HEXD,IFT122,SDHAF2,RPL23A,SPATC1L,KDM1A,CCDC24,GABARAP,RRP7A,CCDC12,EIF3K,PTRHD1,FBXO2,CDK5,COX7A2,CLTB,MCRIP1,MECR,PRAME,SDF2L1,ABHD8,IQCC,JMJD4,MRPL52,SCNM1,PRADC1,RTRAF,TEDC2,MED16,DNALI1,FCGRT,EMG1,CCDC28B,C1orf159,FAM98C,RTKN,IFTAP,RPL23,FAHD2B,TAX1BP3,PSMB2,TMEM18,EIF2B4,HSCB,RPL13A,APBB1,RPL37A,LSM3,C8orf58,SURF1,PLD3,DNAJC8,LCMT1,C11orf68,GPN2,COMMD9,CTDNEP1,STYXL1,SLC25A42,EEF1B2,RPA2,SMPD2,UBL7,PSMC3,NAA38,NLE1,SHISA4,CCDC106,NAA10,CPLANE2,METTL23,TMEM120A,SLC38A10,STX8,EPN1,MVB12A,NT5DC2,SV2A,CHMP2A,BRMS1,SYCE1L,PRR7,ST3GAL3,MPND,LENG1,PRXL2B,ZNF48,DENND6B,PEX11G,CCHCR1,PRMT7,RER1,IFI27L2,REXO4,SGF29,NEK8,MBD3,RPS10,QARS1,COMMD1,FIZ1,TRPT1,PSPN,MRPS9,CD2BP2,SMIM12,ALKBH4,PYURF,SHKBP1,PUSL1,HMBS,KRTCAP2,KHDC1,POP5,PPM1G,SYF2,TMEM91,NTHL1,MYL5,UBXN6,TNFRSF14,UBE2L3,STK32C,UBXN11,PTCD1,B9D1,DTNBP1,PPCDC,LRFN1,ISOC2,S100A13,SSBP3,CROCC,NCAPH2,ATPAF2,AKR7A2,TRIOBP,ACAP3,JOSD2,SNRNP40,SPAG7,NOSIP,MVD,RFC2,VPS72,BLOC1S1,MORN2,C11orf1,STMN1,PYM1,ZBTB8OS,POMT1,WDR25,STARD3,CDPF1,UBE2J2,NAT14,EFNB3,P3H3,DNPH1,LSM10,NPRL2,VAMP8,VAX2,SLC66A1,UQCRH,COQ4,COPS9,DHRS12,ZMAT5,STX10,FIBP,PHLDB3,RPL39L,ACBD4,PMF1-BGLAP,LRRC23,SIPA1,TMEM223,SNRPD3,DFFA,RPL36AL,PPP1R7,VAMP5,SLC25A10,ENDOV,GLB1L,FAM207A,PPIE,MAP2K2,BAD,RAMP2,ELP6,ALKBH7,TMEM258,MYL6,GEMIN7,GEMIN6,CIB2,MIB2,EGFL7,ZNF22,MTHFR,HAUS7,DEAF1,NOL9,MFAP2,ANKS3,UCK1,SMDT1,ANKRD54,MMACHC,TAF10,RNF25,DBNL,SNTA1,NFKBIL1,SAC3D1,CENPS,RPS6,MZT2A,CNIH2,PEX14,RETREG3,ARFRP1,KIAA2013,IFI27L1,BRAT1,AAMDC,PELP1,MRPL27,TRAPPC3,MYL6B,IPO4,ARPC4,MYG1,DTX3,RNF215,ERCC1,MAPK11,NAT9,LSM2,TPGS1,MICOS10,PPAN,C14orf93,CBX8,SMARCD3,DPH5,ATP5PF,RPS13,ORAI2,CEP131,TOMM7,WDR74,B9D2,IMMP1L,FES,SSR2,CTNNBIP1,WRAP73,SDSL,CFDP1,RPS29,PCSK1N,IRF3,SMIM1,IMP3,SERGEF,NDUFA13,C7orf50,PPFIA3,COQ8B,ZSWIM7,SNF8,SLC25A11,HRAS,EIF3F,MPDU1,RP11-523H20.5,RPS26,TTC1,OSCP1,MUTYH,OBSL1,SLC25A1,TMEM9,RPL27,TCEA3,B4GAT1,IFT27,ZNHIT1,PHKG2,NARF,PMF1,SARS2,ZC3HC1,POLR2J,LRRC75B,SWSAP1,SENP3,ERCC2,NT5C3B,CLN3,UROS,SHC2,CFAP410,IL34,MRTO4,DTNB,NUDT14,CTSF,C1orf50,DNAJB2,TMEM99,CCDC102A,BEND5,SERPINB6,C20orf27,OGFOD3,RNASEH2B,TXNDC17,RPS8,RPS11,GAMT,STX5,GPATCH3,GSTM2,ING4,NSUN5,UBXN1,RHOC,THYN1,PGLS,PRAF2,PEX16,ETFB,IFT46,FAF1,HTRA2,FAM228B,TMEM240,PTMS,RBM10,RPL36A,COA8,THAP3,MTFR1L,ARMC7,MOSPD3,ATOX1,SPATA2L,COMMD6,RPS24,TMA7,ABI3,EMC9,YBEY,CNFN,POMZP3,TPRKB,SPATA24,SLC25A6,TPRG1L,BLMH,DUSP28,ENO1,SMIM4,HSD17B14,YPEL3,THAP8,RNASEH2C,SAP30BP,PLEKHO1,TMEM11,GALNT14,ADPRS,THOC5,ATP5MC2,TSEN34,ISYNA1,GNL1,RNF5,PIGU,SPSB2,TFPT,MAP4K2,HSD11B1L,MAPK3,FXYD5,TMEM54,HSPB11,CCDC57,MAP3K6 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ANKRD39,VPS72,DHPS,PEX16,PEX11G,PGLS,LPAR2,UBXN1,SNTA1,SPATA24,GPATCH3,EIF3G,TMEM9,VAMP5,SV2A,C19orf44,PPP2R1A,GTF3C6,C2orf81,FKBPL,PIH1D1,BEND5,ALKBH4,OSCP1,PSMD4,MIIP,C14orf79,LSM2,RPSA,MYL5,TIMM22,RTKN,MANBAL,HSCB,PPCDC,NAA10,IFI27L1,SCNM1,NELFCD,S100A13,RPL35,FAF1,FUZ,PKIG,TRIOBP,PTCD1,MAP2K2,SGF29,SLC25A10,RBP7,COX4I2,CIRBP,KIAA2013 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TMEM87B,SLC35E1,KRAS,VPS4B,UHRF1BP1L,MYH9,UTP20,MARCHF6,FLCN,SERINC5,NUP155,TAF4,EDC4,TAOK3,MED14,PTPN11,TBC1D15,PLEKHB2,ARHGAP21,CLDND1,SLAIN2,ACSL1,RAB5A,ANKFY1,DNAJC14,ARL6IP1,VPS13B,SRP72,SEC24B,ITPRIPL2,RAP1GDS1,PDHX,LIMA1,NUMB,DNM1L,SNX19,PHKB,WWP1,LONP2,TAF1,ABHD3,IQGAP1,ELK1,RAD50,KLF7,TWF1,AFF4,CCSER2,CSNK2A1,RB1CC1,TARS1,KIF21A,POLR2B,ESF1,NUP205,BAZ2A,YIPF6,BRCC3,USP9X,NIPA2,MYOF,PDLIM5,TFAM,KBTBD4,KDM5C,MTMR1,DLAT,CEP97,MFSD1,CPEB2,KDM6A,GALNT7,NUP98,RLIM,APOOL,VAMP7,TBC1D23,OGFOD1,TM9SF4,ABL2,PRKAA1,EIF4G2,MORC3,CSNK1A1,NAA50,CS,CAB39,MIS18BP1,SEC31A,MBOAT1,MOSPD2,TAF2,ANO6,ATRX,TLK1,PLAA,PDCD10,USP14,SUCO,ARCN1,FNDC3B,AHNAK,ZDHHC7,BAZ1A,SDAD1,TAB3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000231789 | ENST00000415330 | exon_skip_319223 | chr19:43526200-43526349 | -22.61 | -0.1604 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000231789 | ENST00000415330 | exon_skip_81540 | chr12:42384939-42384996 | -11.04 | -0.2760 | PPHLN1 | ENST00000395568 | In-frame | | ENSG00000231789 | ENST00000415330 | exon_skip_371367 | chr3:9697710-9697866 | -21.77 | -0.1442 | MTMR14 | ENST00000296003 | In-frame | | ENSG00000231789 | ENST00000415330 | exon_skip_140232 | chr16:634888-634956 | -14.47 | -0.3015 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000231789 | ENST00000415330 | exon_skip_374375 | chr3:49675182-49675309 | -17.26 | -0.1403 | APEH | ENST00000296456 | Frame-shift | | ENSG00000231789 | ENST00000415330 | exon_skip_324294 | chr2:27774423-27774530 | -12.84 | -0.1381 | MRPL33 | ENST00000296102 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000231789 | ENSG00000051523 | CYBA | BLCA,DLBC,KICH,PRAD,THCA,THYM | | KICH | | ENSG00000231789 | ENSG00000102109 | PCSK1N | BLCA,CESC,CHOL,HNSC,KICH,KIRP,PAAD,THCA,UCEC | CHOL | KICH | | ENSG00000231789 | ENSG00000110700 | RPS13 | BLCA,BRCA,DLBC,GBM,KICH,KIRC,KIRP,OV,SARC,THYM,UVM | GBM | | | ENSG00000231789 | ENSG00000117122 | MFAP2 | BLCA,CESC,ESCA,KICH,UVM | | KICH | | ENSG00000231789 | ENSG00000128011 | LRFN1 | BLCA,CHOL,SARC,STAD,THYM,UCEC,UCS,UVM | CHOL | | | ENSG00000231789 | ENSG00000128581 | IFT22 | BLCA,HNSC,KICH,KIRP,PAAD,UCS,UVM | | KICH | | ENSG00000231789 | ENSG00000130005 | GAMT | BLCA,DLBC,KICH,KIRC,KIRP,LUAD,MESO,PAAD,PRAD,THCA,THYM,UCEC,UVM | LUAD | KICH | | ENSG00000231789 | ENSG00000131188 | PRR7 | BLCA,CHOL,HNSC,KIRP,PAAD,SARC,THCA,UCS | CHOL | | | ENSG00000231789 | ENSG00000135736 | CCDC102A | BLCA,BRCA,CHOL,DLBC,ESCA,HNSC,KICH,PCPG,PRAD,SARC,THCA | CHOL | KICH | | ENSG00000231789 | ENSG00000136942 | RPL35 | BLCA,DLBC,GBM,KIRC,KIRP,OV,SARC,TGCT,THCA,THYM,UCS,UVM | GBM | | | ENSG00000231789 | ENSG00000141570 | CBX8 | BLCA,CHOL,ESCA,HNSC,LUAD,LUSC,SARC,UCS | CHOL,LUAD,LUSC | | | ENSG00000231789 | ENSG00000160050 | CCDC28B | BLCA,CHOL,DLBC,ESCA,HNSC,PAAD,PCPG,SARC,THYM,UCEC,UCS | CHOL | | | ENSG00000231789 | ENSG00000160991 | ORAI2 | BLCA,CHOL,HNSC,KICH,PAAD,UCS | CHOL | KICH | | ENSG00000231789 | ENSG00000169217 | CD2BP2 | BLCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,MESO,PRAD,TGCT,THCA,THYM | CHOL | | | ENSG00000231789 | ENSG00000196465 | MYL6B | BLCA,CESC,CHOL,DLBC,ESCA,KICH,KIRC,KIRP,LUSC,OV,PAAD,SARC,STAD,TGCT,THCA,THYM,UCEC,UVM | CHOL | | | ENSG00000231789 | ENSG00000241343 | RPL36A | BLCA,DLBC,GBM,KIRC,KIRP,MESO,OV,SARC,TGCT,THCA,THYM,UCS,UVM | GBM | | | ENSG00000231789 | ENSG00000269190 | FBXO17 | BLCA,ESCA,KICH,PAAD,PRAD | | KICH | | ENSG00000231789 | ENSG00000074800 | ENO1 | BRCA,KICH,LUSC,PCPG,SKCM,TGCT | LUSC | KICH | | ENSG00000231789 | ENSG00000157368 | IL34 | BRCA,CHOL,DLBC,MESO,PRAD | CHOL | | | ENSG00000231789 | ENSG00000162373 | BEND5 | BRCA,CHOL,KICH,LUSC,OV,PAAD,PCPG,PRAD,THCA | CHOL | KICH | | ENSG00000231789 | ENSG00000005448 | WDR54 | CESC,ESCA,KICH,KIRC,KIRP,LUSC,PAAD,PCPG,STAD,TGCT,THCA,THYM,UCS | | KICH | | ENSG00000231789 | ENSG00000053371 | AKR7A2 | CESC,DLBC,HNSC,KICH,KIRC,LUAD,MESO,SARC,SKCM,THYM,UCS,UVM | | KICH | | ENSG00000231789 | ENSG00000105655 | ISYNA1 | CESC,CHOL,ESCA,HNSC,KICH,LUAD,PAAD,PCPG,PRAD,SARC,STAD,THCA,UCS | CHOL,LUAD | KICH | | ENSG00000231789 | ENSG00000119632 | IFI27L2 | CESC,CHOL,DLBC,ESCA,KIRC,KIRP,OV,PAAD,PRAD,STAD,THCA,THYM,UCEC | CHOL | | | ENSG00000231789 | ENSG00000159239 | RP11-523H20.5 | CESC,CHOL,KICH,KIRC,KIRP,PAAD,SARC,STAD,THCA | CHOL | KICH | | ENSG00000231789 | ENSG00000168096 | ANKS3 | CESC,CHOL,HNSC,KIRP,MESO,SARC,THCA | CHOL | | | ENSG00000231789 | ENSG00000175279 | CENPS | CESC,HNSC,KICH,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,TGCT,THCA,THYM,UCS | | KICH | | ENSG00000231789 | ENSG00000178026 | LRRC75B | CESC,HNSC,KICH,KIRP,THCA | | KICH | | ENSG00000231789 | ENSG00000203778 | FAM229B | CESC,HNSC,KICH,KIRP,OV,PAAD,THCA,THYM | | KICH | | ENSG00000231789 | ENSG00000205629 | LCMT1 | CESC,CHOL,MESO,PAAD,TGCT,THYM,UVM | CHOL | | | ENSG00000231789 | ENSG00000010626 | LRRC23 | CHOL,DLBC,ESCA,KICH,KIRC,KIRP,MESO,PAAD,SKCM,THCA,THYM | CHOL | | | ENSG00000231789 | ENSG00000047579 | DTNBP1 | CHOL,DLBC,KICH,KIRC,KIRP,THYM | CHOL | | | ENSG00000231789 | ENSG00000100106 | TRIOBP | CHOL,DLBC,MESO,PCPG,PRAD,THYM,UVM | CHOL | | | ENSG00000231789 | ENSG00000109113 | RAB34 | CHOL,ESCA,HNSC,KICH,LUAD,LUSC,PRAD,THYM | CHOL | KICH | | ENSG00000231789 | ENSG00000111671 | SPSB2 | CHOL,DLBC,KIRP,THCA,THYM | CHOL | | | ENSG00000231789 | ENSG00000112667 | DNPH1 | CHOL,HNSC,KICH,KIRC,KIRP,SARC,THYM | | KICH | | ENSG00000231789 | ENSG00000119640 | ACYP1 | CHOL,KICH,MESO,PAAD,PCPG | CHOL | | | ENSG00000231789 | ENSG00000124006 | OBSL1 | CHOL,ESCA,HNSC,KICH,SARC,THCA,UCS | | KICH | | ENSG00000231789 | ENSG00000125449 | ARMC7 | CHOL,KICH,PRAD,SKCM,THCA,THYM | | KICH | | ENSG00000231789 | ENSG00000134748 | PRPF38A | CHOL,ESCA,KICH,PCPG,UCS | | KICH | | ENSG00000231789 | ENSG00000158062 | UBXN11 | CHOL,HNSC,KICH,MESO,THCA,THYM,UCS | CHOL | KICH | | ENSG00000231789 | ENSG00000160051 | IQCC | CHOL,ESCA,HNSC,KICH,LUAD,MESO,PCPG,TGCT,THCA,THYM | CHOL | | | ENSG00000231789 | ENSG00000160284 | SPATC1L | CHOL,DLBC,HNSC,KICH,LUAD,PAAD,PRAD,THCA,THYM | CHOL,LUAD | | | ENSG00000231789 | ENSG00000163156 | SCNM1 | CHOL,DLBC,HNSC,KICH,KIRP,LUAD,STAD,THCA,THYM,UCS | CHOL | | | ENSG00000231789 | ENSG00000163521 | GLB1L | CHOL,KICH,KIRC,KIRP,MESO,STAD | | KICH | | ENSG00000231789 | ENSG00000166313 | APBB1 | CHOL,HNSC,KICH,PAAD,UCEC | CHOL | | | ENSG00000231789 | ENSG00000183741 | CBX6 | CHOL,HNSC,PAAD,PCPG,UCEC | CHOL | | | ENSG00000231789 | ENSG00000185386 | MAPK11 | CHOL,KIRC,SARC,THCA,UCS,UVM | CHOL | | | ENSG00000231789 | ENSG00000188010 | MORN2 | CHOL,ESCA,KICH,KIRP,PAAD,THCA | | KICH | | ENSG00000231789 | ENSG00000219626 | FAM228B | CHOL,KICH,MESO,PAAD,SARC | | KICH | | ENSG00000231789 | ENSG00000256269 | HMBS | CHOL,ESCA,KIRP,LUAD,THCA,UCS | LUAD | | | ENSG00000231789 | ENSG00000072163 | LIMS2 | DLBC,KICH,KIRC,PRAD,THCA,THYM | | KICH | | ENSG00000231789 | ENSG00000125691 | RPL23 | DLBC,GBM,HNSC,KICH,KIRC,KIRP,SARC,THCA,THYM,UCS,UVM | GBM | | | ENSG00000231789 | ENSG00000129235 | TXNDC17 | DLBC,KICH,KIRP,LUAD,OV,THCA,THYM,UCS | LUAD | | | ENSG00000231789 | ENSG00000158089 | GALNT14 | DLBC,ESCA,KICH,KIRC,SARC | | KICH | | ENSG00000231789 | ENSG00000176531 | PHLDB3 | DLBC,KICH,KIRC,MESO,PAAD,STAD,THCA,UCS | | KICH | | ENSG00000231789 | ENSG00000182518 | FAM104B | DLBC,HNSC,KICH,KIRP,PAAD,PCPG,THCA,UCS | | KICH | | ENSG00000231789 | ENSG00000198242 | RPL23A | DLBC,GBM,HNSC,KICH,KIRC,KIRP,MESO,SARC,TGCT,THYM,UVM | GBM | | | ENSG00000231789 | ENSG00000204308 | RNF5 | DLBC,HNSC,KICH,KIRC,SARC,UCEC | | KICH | | ENSG00000231789 | ENSG00000103485 | QPRT | ESCA,KICH,LUAD,SKCM,STAD,TGCT,THCA | LUAD | KICH | | ENSG00000231789 | ENSG00000117632 | STMN1 | ESCA,GBM,KICH,LUSC,PAAD,PCPG,STAD | LUSC | | | ENSG00000231789 | ENSG00000168393 | DTYMK | ESCA,HNSC,KICH,KIRP,LUAD,TGCT,THCA,THYM,UCS | LUAD | | | ENSG00000231789 | ENSG00000108641 | B9D1 | HNSC,KICH,KIRC,KIRP,LUSC,MESO,PAAD,STAD,THCA | | KICH | | ENSG00000231789 | ENSG00000141696 | P3H4 | HNSC,KICH,KIRP,LUSC,THCA | LUSC | | | ENSG00000231789 | ENSG00000163913 | IFT122 | HNSC,KICH,MESO,THCA,THYM | | KICH | | ENSG00000231789 | ENSG00000172889 | EGFL7 | HNSC,KICH,PAAD,THCA,UCEC | | KICH | | ENSG00000231789 | ENSG00000181513 | ACBD4 | HNSC,KICH,KIRC,KIRP,MESO,PAAD,PRAD,THCA | | KICH | | ENSG00000231789 | ENSG00000205593 | DENND6B | HNSC,KICH,KIRC,KIRP,MESO,SARC,THCA,UCS | | KICH | | ENSG00000231789 | ENSG00000116885 | OSCP1 | KICH,PAAD,PCPG,SKCM,THCA | | KICH | | ENSG00000231789 | ENSG00000121900 | TMEM54 | KICH,KIRP,LUAD,PCPG,UVM | | KICH | | ENSG00000231789 | ENSG00000142046 | TMEM91 | KICH,KIRC,MESO,PRAD,THCA,THYM,UCS | | KICH | | ENSG00000231789 | ENSG00000155366 | RHOC | KICH,KIRP,PCPG,THCA,UCS | | KICH | | ENSG00000231789 | ENSG00000163879 | DNALI1 | KICH,MESO,PAAD,PCPG,THCA | | KICH | | ENSG00000231789 | ENSG00000168899 | VAMP5 | KICH,KIRC,LUAD,PRAD,THCA,THYM | | KICH | | ENSG00000231789 | ENSG00000189171 | S100A13 | KICH,KIRC,KIRP,LUAD,MESO,PRAD,TGCT,THCA,THYM | | KICH | | ENSG00000231789 | ENSG00000204219 | TCEA3 | KICH,KIRC,KIRP,LUAD,MESO,THCA | | KICH |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000231789 | ENST00000415330 | ACSL1 | ENSG00000151726 | ENST00000504342 | -0.1259 | 728 | - | CHOL,LUSC | | ENSG00000231789 | ENST00000415330 | ACSL1 | ENSG00000151726 | ENST00000513317 | -0.1963 | 91 | - | CHOL,LUSC | | ENSG00000231789 | ENST00000415330 | ACSL1 | ENSG00000151726 | ENST00000504900 | -0.1510 | 1 | - | CHOL,LUSC | | ENSG00000231789 | ENST00000415330 | SERINC5 | ENSG00000164300 | ENST00000509193 | -0.2021 | 1 | - | CHOL | | ENSG00000231789 | ENST00000415330 | CS | ENSG00000062485 | ENST00000548746 | -0.1350 | 39 | KICH | - | | ENSG00000231789 | ENST00000415330 | CS | ENSG00000062485 | ENST00000546891 | -0.1137 | 168 | KICH | - | | ENSG00000231789 | ENST00000415330 | CS | ENSG00000062485 | ENST00000552222 | -0.1322 | 30 | KICH | - | | ENSG00000231789 | ENST00000415330 | TM9SF4 | ENSG00000101337 | ENST00000417389 | -0.2603 | 150 | KICH | - | | ENSG00000231789 | ENST00000415330 | LONP2 | ENSG00000102910 | ENST00000416006 | -0.1160 | 366 | KICH | CHOL | | ENSG00000231789 | ENST00000415330 | ARHGAP21 | ENSG00000107863 | ENST00000320481 | -0.3845 | 104 | KICH | GBM | | ENSG00000231789 | ENST00000415330 | PLEKHB2 | ENSG00000115762 | ENST00000404460 | -0.1373 | 1 | KICH | GBM | | ENSG00000231789 | ENST00000415330 | UTP20 | ENSG00000120800 | ENST00000261637 | -0.2089 | 539 | KICH | - | | ENSG00000231789 | ENST00000415330 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.2793 | 371 | KICH | - | | ENSG00000231789 | ENST00000415330 | RAP1GDS1 | ENSG00000138698 | ENST00000510870 | -0.2172 | 791 | KICH | GBM | | ENSG00000231789 | ENST00000415330 | KIF21A | ENSG00000139116 | ENST00000544797 | -0.3044 | 537 | KICH | GBM | | ENSG00000231789 | ENST00000415330 | TWF1 | ENSG00000151239 | ENST00000548315 | -0.2050 | 2 | KICH | - | | ENSG00000231789 | ENST00000415330 | ZDHHC7 | ENSG00000153786 | ENST00000564466 | -0.1379 | 328 | KICH | - | | ENSG00000231789 | ENST00000415330 | ABHD3 | ENSG00000158201 | ENST00000584464 | -0.1227 | 807 | KICH | - | | ENSG00000231789 | ENST00000415330 | MBOAT1 | ENSG00000172197 | ENST00000324607 | -0.1515 | 614 | KICH | - | | ENSG00000231789 | ENST00000415330 | ITPRIPL2 | ENSG00000205730 | ENST00000381440 | -0.1032 | 1 | KICH | - | | ENSG00000231789 | ENST00000415330 | LIMA1 | ENSG00000050405 | ENST00000552909 | -0.1838 | 1 | KICH | - | | ENSG00000231789 | ENST00000415330 | PDHX | ENSG00000110435 | ENST00000526309 | -0.8900 | 12 | KICH | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000231789.2 | ENST00000415330.2 | 168 | 147 | 653 |
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