 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | HMOX2,CD14,CLTB,TKT,FTL,CTSD,ZYX,TOLLIP,ALDOA,NDUFS7,ATP6V0D1,MARCHF2,MSRB1,RHOG,LGALS1,ITPK1,NUDT22 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000231365 | ENST00000445565 | exon_skip_382458 | chr3:38131595-38131638 | -7.35 | -0.1885 | ACAA1 | ENST00000333167 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000231365 | hsa-mir-22 | ENST00000425884 | chr1:119140533-119140620 | 194.00 | -80.69 | 86 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000425884 | chr1:119140686-119140761 | 190.00 | -87.54 | 86 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000425884 | chr1:119140988-119141082 | 180.00 | -83.96 | 92 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000425884 | chr1:119140839-119140906 | 163.00 | -70.63 | 81 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119142148-119142237 | 204.00 | -92.33 | 80 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119140533-119140620 | 194.00 | -80.69 | 86 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119140686-119140761 | 190.00 | -87.54 | 86 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119141440-119141535 | 178.00 | -80.56 | 95 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119141006-119141088 | 164.00 | -70.07 | 86 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119141337-119141431 | 161.00 | -81.28 | 91 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119141531-119141612 | 159.00 | -74.50 | 80 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119142031-119142112 | 159.00 | -68.86 | 82 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119141191-119141274 | 156.00 | -80.96 | 86 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119141939-119142039 | 156.00 | -84.69 | 100 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119142772-119142859 | 151.00 | -74.58 | 78 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119142415-119142500 | 145.00 | -62.74 | 78 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119141668-119141754 | 142.00 | -80.80 | 87 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119142654-119142742 | 142.00 | -63.11 | 80 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000440150 | chr1:119140766-119140851 | 140.00 | -72.99 | 82 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000457043 | chr1:119141012-119141114 | 200.00 | -75.40 | 99 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000457043 | chr1:119140709-119140761 | 162.00 | -78.06 | 64 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000457043 | chr1:119140766-119140868 | 142.00 | -77.37 | 99 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000413531 | chr1:119141176-119141270 | 182.00 | -71.42 | 91 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000413531 | chr1:119141495-119141577 | 176.00 | -63.51 | 79 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000413531 | chr1:119140906-119140973 | 163.00 | -70.63 | 81 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000413531 | chr1:119141605-119141695 | 152.00 | -67.08 | 94 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000413531 | chr1:119140748-119140831 | 148.00 | -75.66 | 85 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119141585-119141677 | 219.00 | -85.30 | 88 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119141485-119141569 | 181.00 | -70.57 | 69 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119142101-119142191 | 165.00 | -69.01 | 89 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119140906-119140973 | 163.00 | -70.63 | 81 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119141102-119141173 | 157.00 | -59.65 | 81 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119141415-119141492 | 154.00 | -73.73 | 80 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119141313-119141400 | 152.00 | -71.04 | 85 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119140748-119140831 | 148.00 | -75.66 | 85 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119141161-119141241 | 144.00 | -65.69 | 77 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000418015 | chr1:119141880-119141972 | 144.00 | -68.02 | 89 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000445565 | chr1:119146829-119146918 | 163.00 | -71.02 | 85 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000445565 | chr1:119146625-119146714 | 158.00 | -74.20 | 87 | NA | | ENSG00000231365 | hsa-mir-22 | ENST00000445565 | chr1:119146718-119146795 | 146.00 | -65.24 | 78 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_16515 | ENSG00000231365.4 | chr1 | 119150872 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16523 | ENSG00000231365.4 | chr1 | 119150889 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16552 | ENSG00000231365.4 | chr1 | 119150958 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16558 | ENSG00000231365.4 | chr1 | 119150965 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16564 | ENSG00000231365.4 | chr1 | 119150996 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16570 | ENSG00000231365.4 | chr1 | 119151004 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16573 | ENSG00000231365.4 | chr1 | 119151006 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16582 | ENSG00000231365.4 | chr1 | 119151037 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16585 | ENSG00000231365.4 | chr1 | 119151038 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16588 | ENSG00000231365.4 | chr1 | 119151055 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16591 | ENSG00000231365.4 | chr1 | 119151069 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16594 | ENSG00000231365.4 | chr1 | 119151074 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16597 | ENSG00000231365.4 | chr1 | 119151101 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16615 | ENSG00000231365.4 | chr1 | 119158164 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16618 | ENSG00000231365.4 | chr1 | 119158172 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16621 | ENSG00000231365.4 | chr1 | 119158189 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16633 | ENSG00000231365.4 | chr1 | 119158210 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16669 | ENSG00000231365.4 | chr1 | 119158340 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16735 | ENSG00000231365.4 | chr1 | 119161672 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16741 | ENSG00000231365.4 | chr1 | 119161688 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_16747 | ENSG00000231365.4 | chr1 | 119161721 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 | | LncEditing_17311 | ENSG00000231365.4 | chr1 | 119178826 | + | antisense | RP11-418J17.1 | ENST00000440150.4 | antisense | RP11-418J17.1-002 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000231365 | LncEditing_16515 | UCEC | chr1_119150872_+ | 1.496145e+00 | 1.098258e+00 | 2.241989e+00 | 5.899152e+00 | 3.653743e-09 | 6.188993e-09 | UP | | ENSG00000231365 | LncEditing_16515 | SARC | chr1_119150872_+ | 1.516033e+00 | 1.014727e+00 | 1.726490e+00 | 4.884472e+00 | 1.037065e-06 | 1.371602e-06 | UP | | ENSG00000231365 | LncEditing_16523 | SARC | chr1_119150889_+ | 1.512603e+00 | 1.023937e+00 | 1.776496e+00 | 4.316844e+00 | 1.582759e-05 | 1.896228e-05 | UP | | ENSG00000231365 | LncEditing_16515 | UCS | chr1_119150872_+ | 1.854234e+00 | 1.370146e+00 | 2.290983e+00 | 2.675722e+00 | 7.456841e-03 | 1.028569e-02 | UP | | ENSG00000231365 | LncEditing_16552 | UCS | chr1_119150958_+ | 2.382057e+00 | 1.364897e+00 | 1.244686e+00 | 3.364312e+00 | 7.673469e-04 | 1.798469e-03 | UP | | ENSG00000231365 | LncEditing_16597 | UCS | chr1_119151101_+ | 2.591102e+00 | 1.339812e+00 | 1.050933e+00 | 2.808009e+00 | 4.984890e-03 | 7.598917e-03 | UP | | ENSG00000231365 | LncEditing_16735 | UCS | chr1_119161672_+ | 2.040800e+00 | 1.350635e+00 | 1.679270e+00 | 2.331851e+00 | 1.970854e-02 | 2.309594e-02 | UP | | ENSG00000231365 | LncEditing_16741 | UCS | chr1_119161688_+ | 2.139786e+00 | 1.346365e+00 | 1.496116e+00 | 2.219760e+00 | 2.643504e-02 | 2.950339e-02 | UP | | ENSG00000231365 | LncEditing_16515 | KIRC | chr1_119150872_+ | 1.375896e+00 | 1.100112e+00 | 3.098651e+00 | 7.252489e+00 | 4.091816e-13 | 7.005114e-13 | UP | | ENSG00000231365 | LncEditing_16515 | GBM | chr1_119150872_+ | 1.369787e+00 | 1.045598e+00 | 2.566579e+00 | 4.594042e+00 | 4.347425e-06 | 7.612699e-06 | UP | | ENSG00000231365 | LncEditing_16523 | GBM | chr1_119150889_+ | 1.557243e+00 | 1.163388e+00 | 2.377207e+00 | 4.638087e+00 | 3.516495e-06 | 6.238695e-06 | UP | | ENSG00000231365 | LncEditing_16552 | GBM | chr1_119150958_+ | 1.457457e+00 | 1.211490e+00 | 3.749939e+00 | 2.664708e+00 | 7.705522e-03 | 8.533513e-03 | UP | | ENSG00000231365 | LncEditing_16564 | GBM | chr1_119150996_+ | 1.507192e+00 | 1.213104e+00 | 3.193258e+00 | 3.059799e+00 | 2.214853e-03 | 2.627296e-03 | UP | | ENSG00000231365 | LncEditing_16735 | GBM | chr1_119161672_+ | 1.735703e+00 | 1.203026e+00 | 1.890887e+00 | 3.679532e+00 | 2.336625e-04 | 3.114217e-04 | UP | | ENSG00000231365 | LncEditing_16515 | LGG | chr1_119150872_+ | 1.262843e+00 | 9.242705e-01 | 2.220799e+00 | 8.155849e+00 | 3.467362e-16 | 7.871247e-16 | UP | | ENSG00000231365 | LncEditing_16523 | LGG | chr1_119150889_+ | 1.204982e+00 | 1.058102e+00 | 5.332392e+00 | 2.812066e+00 | 4.922439e-03 | 5.156145e-03 | UP | | ENSG00000231365 | LncEditing_16515 | KICH | chr1_119150872_+ | 1.134189e+00 | 8.389339e-01 | 2.298683e+00 | 2.073871e+00 | 3.809130e-02 | 4.061777e-02 | UP | | ENSG00000231365 | LncEditing_16615 | LAML | chr1_119158164_+ | 3.611043e+00 | 2.376248e+00 | 1.656369e+00 | 6.457989e+00 | 1.061034e-10 | 6.330324e-10 | UP | | ENSG00000231365 | LncEditing_16618 | LAML | chr1_119158172_+ | 3.574090e+00 | 2.722867e+00 | 2.548099e+00 | 3.170949e+00 | 1.519417e-03 | 1.920655e-03 | UP | | ENSG00000231365 | LncEditing_16621 | LAML | chr1_119158189_+ | 3.801337e+00 | 2.616032e+00 | 1.854852e+00 | 4.759330e+00 | 1.942364e-06 | 4.329999e-06 | UP | | ENSG00000231365 | LncEditing_16633 | LAML | chr1_119158210_+ | 3.905613e+00 | 2.670600e+00 | 1.823536e+00 | 4.280354e+00 | 1.865964e-05 | 3.344653e-05 | UP | | ENSG00000231365 | LncEditing_16669 | LAML | chr1_119158340_+ | 4.115275e+00 | 2.728086e+00 | 1.686056e+00 | 4.008256e+00 | 6.116872e-05 | 9.979309e-05 | UP | | ENSG00000231365 | LncEditing_16735 | LAML | chr1_119161672_+ | 3.872877e+00 | 2.731449e+00 | 1.985155e+00 | 3.388769e+00 | 7.020706e-04 | 9.414301e-04 | UP | | ENSG00000231365 | LncEditing_16515 | KIRP | chr1_119150872_+ | 1.523646e+00 | 1.163824e+00 | 2.572978e+00 | 3.270694e+00 | 1.072838e-03 | 1.270988e-03 | UP | | ENSG00000231365 | LncEditing_16735 | KIRP | chr1_119161672_+ | 1.754693e+00 | 1.109112e+00 | 1.510999e+00 | 6.966971e+00 | 3.238376e-12 | 9.261344e-12 | UP | | ENSG00000231365 | LncEditing_16515 | CHOL | chr1_119150872_+ | 2.135253e+00 | 1.560497e+00 | 2.210427e+00 | 2.027588e+00 | 4.260236e-02 | 4.418023e-02 | UP | | ENSG00000231365 | LncEditing_16552 | CHOL | chr1_119150958_+ | 2.317284e+00 | 1.556197e+00 | 1.740915e+00 | 2.218374e+00 | 2.652936e-02 | 3.130736e-02 | UP | | ENSG00000231365 | LncEditing_16735 | CHOL | chr1_119161672_+ | 2.193091e+00 | 1.354968e+00 | 1.439456e+00 | 3.288958e+00 | 1.005590e-03 | 4.223477e-03 | UP | | ENSG00000231365 | LncEditing_16741 | CHOL | chr1_119161688_+ | 2.254207e+00 | 1.393304e+00 | 1.440694e+00 | 3.408745e+00 | 6.526245e-04 | 3.437564e-03 | UP | | ENSG00000231365 | LncEditing_16747 | CHOL | chr1_119161721_+ | 2.619411e+00 | 1.589783e+00 | 1.388093e+00 | 2.365825e+00 | 1.798994e-02 | 2.342876e-02 | UP | | ENSG00000231365 | LncEditing_16515 | THYM | chr1_119150872_+ | 1.382783e+00 | 1.119857e+00 | 3.286664e+00 | 2.626428e+00 | 8.628616e-03 | 1.016676e-02 | UP | | ENSG00000231365 | LncEditing_16741 | THYM | chr1_119161688_+ | 1.479053e+00 | 1.109286e+00 | 2.409393e+00 | 3.837704e+00 | 1.241902e-04 | 2.103472e-04 | UP | | ENSG00000231365 | LncEditing_16515 | OV | chr1_119150872_+ | 1.325155e+00 | 1.050502e+00 | 2.984340e+00 | 4.387384e+00 | 1.147222e-05 | 1.396255e-05 | UP | | ENSG00000231365 | LncEditing_16552 | OV | chr1_119150958_+ | 1.543862e+00 | 1.085439e+00 | 1.967477e+00 | 5.646352e+00 | 1.638878e-08 | 2.454313e-08 | UP | | ENSG00000231365 | LncEditing_16558 | OV | chr1_119150965_+ | 1.476311e+00 | 1.115981e+00 | 2.477181e+00 | 4.527283e+00 | 5.974687e-06 | 7.398956e-06 | UP | | ENSG00000231365 | LncEditing_16564 | OV | chr1_119150996_+ | 1.463999e+00 | 1.077393e+00 | 2.260554e+00 | 6.059963e+00 | 1.361530e-09 | 2.221698e-09 | UP | | ENSG00000231365 | LncEditing_16570 | OV | chr1_119151004_+ | 1.475302e+00 | 1.172732e+00 | 3.019896e+00 | 3.784108e+00 | 1.542610e-04 | 1.748989e-04 | UP | | ENSG00000231365 | LncEditing_16573 | OV | chr1_119151006_+ | 1.558085e+00 | 1.146039e+00 | 2.256735e+00 | 4.990319e+00 | 6.027969e-07 | 8.003925e-07 | UP | | ENSG00000231365 | LncEditing_16582 | OV | chr1_119151037_+ | 1.404767e+00 | 1.058123e+00 | 2.446043e+00 | 5.829638e+00 | 5.554769e-09 | 8.562632e-09 | UP | | ENSG00000231365 | LncEditing_16585 | OV | chr1_119151038_+ | 1.400652e+00 | 1.128178e+00 | 3.204063e+00 | 4.843314e+00 | 1.276914e-06 | 1.654858e-06 | UP | | ENSG00000231365 | LncEditing_16588 | OV | chr1_119151055_+ | 1.377443e+00 | 9.619164e-01 | 1.930468e+00 | 6.678126e+00 | 2.420177e-11 | 4.660425e-11 | UP | | ENSG00000231365 | LncEditing_16591 | OV | chr1_119151069_+ | 1.440688e+00 | 1.147534e+00 | 3.046735e+00 | 4.152397e+00 | 3.290109e-05 | 3.898525e-05 | UP | | ENSG00000231365 | LncEditing_16594 | OV | chr1_119151074_+ | 1.419630e+00 | 1.022109e+00 | 2.109858e+00 | 6.765036e+00 | 1.332758e-11 | 2.624134e-11 | UP | | ENSG00000231365 | LncEditing_16515 | TGCT | chr1_119150872_+ | 1.423458e+00 | 9.967183e-01 | 1.944987e+00 | 4.573154e+00 | 4.804362e-06 | 7.645852e-06 | UP | | ENSG00000231365 | LncEditing_16515 | LUAD | chr1_119150872_+ | 1.663343e+00 | 1.245512e+00 | 2.396090e+00 | 5.907992e+00 | 3.463033e-09 | 4.700607e-09 | UP | | ENSG00000231365 | LncEditing_16735 | CESC | chr1_119161672_+ | 1.505307e+00 | 1.073648e+00 | 2.051129e+00 | 4.387657e+00 | 1.145781e-05 | 1.479362e-05 | UP | | ENSG00000231365 | LncEditing_16515 | PRAD | chr1_119150872_+ | 1.833284e+00 | 1.563836e+00 | 4.360314e+00 | 4.825008e+00 | 1.399976e-06 | 1.969966e-06 | UP | | ENSG00000231365 | LncEditing_16523 | PRAD | chr1_119150889_+ | 1.792304e+00 | 1.606305e+00 | 6.326318e+00 | 2.580294e+00 | 9.871623e-03 | 1.053092e-02 | UP | | ENSG00000231365 | LncEditing_16552 | PRAD | chr1_119150958_+ | 2.154158e+00 | 1.608427e+00 | 2.372627e+00 | 5.115600e+00 | 3.127448e-07 | 4.519124e-07 | UP | | ENSG00000231365 | LncEditing_16735 | PRAD | chr1_119161672_+ | 2.050948e+00 | 1.585772e+00 | 2.694649e+00 | 5.871065e+00 | 4.330056e-09 | 7.311608e-09 | UP | | ENSG00000231365 | LncEditing_16741 | PRAD | chr1_119161688_+ | 1.902317e+00 | 1.623923e+00 | 4.380689e+00 | 4.250065e+00 | 2.137089e-05 | 2.757685e-05 | UP | | ENSG00000231365 | LncEditing_16515 | BRCA | chr1_119150872_+ | 1.560498e+00 | 1.025610e+00 | 1.651460e+00 | 9.576144e+00 | 1.007357e-21 | 1.453072e-21 | UP | | ENSG00000231365 | LncEditing_16515 | ESCA | chr1_119150872_+ | 1.614597e+00 | 9.545912e-01 | 1.318880e+00 | 5.633350e+00 | 1.767418e-08 | 3.682413e-08 | UP | | ENSG00000231365 | LncEditing_16523 | ESCA | chr1_119150889_+ | 1.828185e+00 | 1.056999e+00 | 1.265122e+00 | 2.822661e+00 | 4.762694e-03 | 5.150984e-03 | UP | | ENSG00000231365 | LncEditing_16588 | ESCA | chr1_119151055_+ | 1.868718e+00 | 1.063355e+00 | 1.229369e+00 | 2.094597e+00 | 3.620681e-02 | 3.667930e-02 | UP | | ENSG00000231365 | LncEditing_16621 | ESCA | chr1_119158189_+ | 1.878606e+00 | 1.051088e+00 | 1.193632e+00 | 3.319974e+00 | 9.002593e-04 | 1.031117e-03 | UP | | ENSG00000231365 | LncEditing_17311 | ESCA | chr1_119178826_+ | 1.965061e+00 | 1.047281e+00 | 1.101413e+00 | 3.160595e+00 | 1.574475e-03 | 1.767594e-03 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000231365 | LncEditing_16515 | -6.275871e-01 | 2.890777e-02 | 4.405737e-02 | | ENSG00000231365 | LncEditing_16741 | -6.715258e-01 | 4.762308e-02 | 4.930599e-02 | | ENSG00000231365 | LncEditing_16573 | -3.749906e-01 | 3.429884e-03 | 5.354567e-03 | | ENSG00000231365 | LncEditing_16582 | -3.033807e-01 | 7.088146e-05 | 3.238164e-04 | | ENSG00000231365 | LncEditing_16523 | -3.807621e-01 | 2.265618e-03 | 2.614174e-03 | | ENSG00000231365 | LncEditing_16515 | -3.919186e-01 | 1.988901e-02 | 2.341364e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000231365 | ENST00000425884 | FTL | ENSG00000087086 | ENST00000331825 | -0.1147 | 251 | - | CHOL | | ENSG00000231365 | ENST00000425884 | CD14 | ENSG00000170458 | ENST00000302014 | -0.1475 | 92 | - | CHOL | | ENSG00000231365 | ENST00000425884 | CD14 | ENSG00000170458 | ENST00000401743 | -0.1475 | 92 | - | CHOL | | ENSG00000231365 | ENST00000425884 | MSRB1 | ENSG00000198736 | ENST00000473663 | -0.1262 | 197 | - | CHOL | | ENSG00000231365 | ENST00000425884 | MSRB1 | ENSG00000198736 | ENST00000399753 | -0.1374 | 258 | - | CHOL | | ENSG00000231365 | ENST00000425884 | MSRB1 | ENSG00000198736 | ENST00000564908 | -0.4324 | 318 | - | CHOL | | ENSG00000231365 | ENST00000425884 | TOLLIP | ENSG00000078902 | ENST00000527938 | -0.1652 | 159 | - | GBM,CHOL | | ENSG00000231365 | ENST00000425884 | ITPK1 | ENSG00000100605 | ENST00000267615 | -0.1884 | 1 | - | GBM | | ENSG00000231365 | ENST00000425884 | ITPK1 | ENSG00000100605 | ENST00000354313 | -0.1884 | 1 | - | GBM | | ENSG00000231365 | ENST00000425884 | ATP6V0D1 | ENSG00000159720 | ENST00000565835 | -0.1235 | 169 | - | GBM | | ENSG00000231365 | ENST00000425884 | ATP6V0D1 | ENSG00000159720 | ENST00000540149 | -0.2028 | 494 | - | GBM | | ENSG00000231365 | ENST00000425884 | ATP6V0D1 | ENSG00000159720 | ENST00000561852 | -0.1057 | 1 | - | GBM | | ENSG00000231365 | ENST00000425884 | ATP6V0D1 | ENSG00000159720 | ENST00000564788 | -0.1351 | 548 | - | GBM | | ENSG00000231365 | ENST00000425884 | CLTB | ENSG00000175416 | ENST00000508425 | -0.1284 | 76 | - | GBM | | ENSG00000231365 | ENST00000440150 | FTL | ENSG00000087086 | ENST00000331825 | -0.1494 | 788 | - | CHOL | | ENSG00000231365 | ENST00000440150 | CD14 | ENSG00000170458 | ENST00000302014 | -0.1475 | 63 | - | CHOL | | ENSG00000231365 | ENST00000440150 | CD14 | ENSG00000170458 | ENST00000401743 | -0.1475 | 63 | - | CHOL | | ENSG00000231365 | ENST00000440150 | MSRB1 | ENSG00000198736 | ENST00000473663 | -0.1465 | 1626 | - | CHOL | | ENSG00000231365 | ENST00000440150 | MSRB1 | ENSG00000198736 | ENST00000399753 | -0.1664 | 1512 | - | CHOL | | ENSG00000231365 | ENST00000440150 | MSRB1 | ENSG00000198736 | ENST00000564908 | -0.3786 | 1686 | - | CHOL | | ENSG00000231365 | ENST00000440150 | TOLLIP | ENSG00000078902 | ENST00000527938 | -0.1652 | 130 | - | GBM,CHOL | | ENSG00000231365 | ENST00000440150 | ATP6V0D1 | ENSG00000159720 | ENST00000565835 | -0.1145 | 256 | - | GBM | | ENSG00000231365 | ENST00000440150 | ATP6V0D1 | ENSG00000159720 | ENST00000540149 | -0.2298 | 1539 | - | GBM | | ENSG00000231365 | ENST00000440150 | ATP6V0D1 | ENSG00000159720 | ENST00000564788 | -0.1571 | 1470 | - | GBM | | ENSG00000231365 | ENST00000440150 | CLTB | ENSG00000175416 | ENST00000310418 | -0.1075 | 918 | - | GBM | | ENSG00000231365 | ENST00000440150 | CLTB | ENSG00000175416 | ENST00000345807 | -0.1075 | 918 | - | GBM | | ENSG00000231365 | ENST00000440150 | CLTB | ENSG00000175416 | ENST00000508425 | -0.1284 | 47 | - | GBM | | ENSG00000231365 | ENST00000457043 | FTL | ENSG00000087086 | ENST00000331825 | -0.2487 | 1 | - | CHOL | | ENSG00000231365 | ENST00000457043 | CD14 | ENSG00000170458 | ENST00000302014 | -0.1908 | 1 | - | CHOL | | ENSG00000231365 | ENST00000457043 | CD14 | ENSG00000170458 | ENST00000401743 | -0.1908 | 1 | - | CHOL | | ENSG00000231365 | ENST00000457043 | MSRB1 | ENSG00000198736 | ENST00000473663 | -0.1613 | 1 | - | CHOL | | ENSG00000231365 | ENST00000457043 | MSRB1 | ENSG00000198736 | ENST00000399753 | -0.1086 | 20 | - | CHOL | | ENSG00000231365 | ENST00000457043 | MSRB1 | ENSG00000198736 | ENST00000564908 | -0.4324 | 6 | - | CHOL | | ENSG00000231365 | ENST00000457043 | TOLLIP | ENSG00000078902 | ENST00000527938 | -0.1430 | 1 | - | GBM,CHOL | | ENSG00000231365 | ENST00000457043 | ATP6V0D1 | ENSG00000159720 | ENST00000290949 | -0.1006 | 1 | - | GBM | | ENSG00000231365 | ENST00000457043 | ATP6V0D1 | ENSG00000159720 | ENST00000602876 | -0.1219 | 1 | - | GBM | | ENSG00000231365 | ENST00000457043 | ATP6V0D1 | ENSG00000159720 | ENST00000565835 | -0.1058 | 13 | - | GBM | | ENSG00000231365 | ENST00000457043 | ATP6V0D1 | ENSG00000159720 | ENST00000540149 | -0.3390 | 1 | - | GBM | | ENSG00000231365 | ENST00000457043 | ATP6V0D1 | ENSG00000159720 | ENST00000564788 | -0.1546 | 10 | - | GBM | | ENSG00000231365 | ENST00000457043 | CLTB | ENSG00000175416 | ENST00000310418 | -0.1143 | 1 | - | GBM | | ENSG00000231365 | ENST00000457043 | CLTB | ENSG00000175416 | ENST00000345807 | -0.1143 | 1 | - | GBM | | ENSG00000231365 | ENST00000457043 | CLTB | ENSG00000175416 | ENST00000508425 | -0.1609 | 1 | - | GBM | | ENSG00000231365 | ENST00000413531 | FTL | ENSG00000087086 | ENST00000331825 | -0.2425 | 1 | - | CHOL | | ENSG00000231365 | ENST00000413531 | CD14 | ENSG00000170458 | ENST00000302014 | -0.1908 | 1 | - | CHOL | | ENSG00000231365 | ENST00000413531 | CD14 | ENSG00000170458 | ENST00000401743 | -0.1908 | 1 | - | CHOL | | ENSG00000231365 | ENST00000413531 | MSRB1 | ENSG00000198736 | ENST00000473663 | -0.1162 | 68 | - | CHOL | | ENSG00000231365 | ENST00000413531 | MSRB1 | ENSG00000198736 | ENST00000399753 | -0.1466 | 145 | - | CHOL | | ENSG00000231365 | ENST00000413531 | MSRB1 | ENSG00000198736 | ENST00000564908 | -0.1962 | 6 | - | CHOL | | ENSG00000231365 | ENST00000413531 | TOLLIP | ENSG00000078902 | ENST00000527938 | -0.1495 | 1 | - | GBM,CHOL | | ENSG00000231365 | ENST00000413531 | ATP6V0D1 | ENSG00000159720 | ENST00000565835 | -0.1219 | 1 | - | GBM | | ENSG00000231365 | ENST00000413531 | ATP6V0D1 | ENSG00000159720 | ENST00000540149 | -0.9660 | 1 | - | GBM | | ENSG00000231365 | ENST00000413531 | CLTB | ENSG00000175416 | ENST00000310418 | -0.1089 | 1 | - | GBM | | ENSG00000231365 | ENST00000413531 | CLTB | ENSG00000175416 | ENST00000345807 | -0.1089 | 1 | - | GBM | | ENSG00000231365 | ENST00000413531 | CLTB | ENSG00000175416 | ENST00000508425 | -0.1141 | 1 | - | GBM | | ENSG00000231365 | ENST00000418015 | FTL | ENSG00000087086 | ENST00000331825 | -0.1363 | 837 | - | CHOL | | ENSG00000231365 | ENST00000418015 | CD14 | ENSG00000170458 | ENST00000302014 | -0.1179 | 887 | - | CHOL | | ENSG00000231365 | ENST00000418015 | CD14 | ENSG00000170458 | ENST00000401743 | -0.1179 | 887 | - | CHOL | | ENSG00000231365 | ENST00000418015 | MSRB1 | ENSG00000198736 | ENST00000473663 | -0.1162 | 68 | - | CHOL | | ENSG00000231365 | ENST00000418015 | MSRB1 | ENSG00000198736 | ENST00000399753 | -0.1466 | 145 | - | CHOL | | ENSG00000231365 | ENST00000418015 | MSRB1 | ENSG00000198736 | ENST00000564908 | -0.2860 | 966 | - | CHOL | | ENSG00000231365 | ENST00000418015 | TOLLIP | ENSG00000078902 | ENST00000527938 | -0.1495 | 1 | - | GBM,CHOL | | ENSG00000231365 | ENST00000418015 | ATP6V0D1 | ENSG00000159720 | ENST00000565835 | -0.1219 | 1 | - | GBM | | ENSG00000231365 | ENST00000418015 | ATP6V0D1 | ENSG00000159720 | ENST00000540149 | -0.9660 | 1 | - | GBM | | ENSG00000231365 | ENST00000445565 | FTL | ENSG00000087086 | ENST00000331825 | -0.1088 | 370 | - | CHOL | | ENSG00000231365 | ENST00000445565 | CD14 | ENSG00000170458 | ENST00000302014 | -0.1579 | 213 | - | CHOL | | ENSG00000231365 | ENST00000445565 | CD14 | ENSG00000170458 | ENST00000401743 | -0.1579 | 213 | - | CHOL | | ENSG00000231365 | ENST00000445565 | MSRB1 | ENSG00000198736 | ENST00000399753 | -0.1157 | 397 | - | CHOL | | ENSG00000231365 | ENST00000445565 | MSRB1 | ENSG00000198736 | ENST00000564908 | -0.2833 | 48 | - | CHOL | | ENSG00000231365 | ENST00000445565 | TOLLIP | ENSG00000078902 | ENST00000527938 | -0.1166 | 195 | - | GBM,CHOL | | ENSG00000231365 | ENST00000445565 | ATP6V0D1 | ENSG00000159720 | ENST00000540149 | -0.1413 | 445 | - | GBM |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000231365.4 | ENST00000425884.4 | 173 | 622 | 1143 | | ENSG00000231365.4 | ENST00000440150.4 | 99 | 362 | 63 | | ENSG00000231365.4 | ENST00000457043.1 | 108 | 497 | 823 | | ENSG00000231365.4 | ENST00000413531.4 | 55 | 253 | 86 | | ENSG00000231365.4 | ENST00000418015.1 | 83 | 152 | 403 | | ENSG00000231365.4 | ENST00000445565.1 | 83 | 152 | 403 |
|
