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lncRNA: ENSG00000231312

Summary for MAP4K3-DT

Gene summary

Gene information	Ensembl ID	ENSG00000231312
	Gene symbol	MAP4K3-DT
	Gene name	MAP4K3 divergent transcript
	HGNC	54056
	Entrez ID	728730
	Gene type	antisense
	Synonyms	02p22.1\|MAP4K3-DT\|AC007246.3
	UniProtAcc

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Structure and expression level for MAP4K3-DT

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000231312	2.943942e+02	-1.195321e+00	2.323056e-01	-5.145466e+00	2.670000e-07	2.490000e-06	DOWN	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000231312	3.129143e-01	3.635788e-02	CHOL	3.761006e-02
ENSG00000231312	-3.689560e-01	3.738108e-04	KICH	5.695492e-04
ENSG00000231312	-3.120651e-01	3.366804e-15	KIRC	1.436077e-14

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lncRNA-Protein interaction for MAP4K3-DT

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231312	ENST00000438649	AC007246.3	ENSG00000036257	CUL3	70.09	92.9796	Q13618	Epi	NA
ENSG00000231312	ENST00000426083	AC007246.3	ENSG00000185658	BRWD1	58.49	96.6643	Q9NSI6	Epi	NA
ENSG00000231312	ENST00000438649	AC007246.3	ENSG00000185658	BRWD1	52.12	97.1587	Q9NSI6	Epi	NA
ENSG00000231312	ENST00000366187	AC007246.3	ENSG00000185658	BRWD1	52.55	96.147	Q9NSI6	Epi	NA
ENSG00000231312	ENST00000446698	AC007246.3	ENSG00000166446	CDYL2	7.67	92.0876	Q8N8U2	Epi	NA
ENSG00000231312	ENST00000438649	AC007246.3	ENSG00000143970	ASXL2	36.84	94.5921	Q76L83	Epi	NA
ENSG00000231312	ENST00000438649	AC007246.3	ENSG00000015171	ZMYND11	6.89	91.9287	Q15326	Epi	NA
ENSG00000231312	ENST00000449569	AC007246.3	ENSG00000185658	BRWD1	79.59	93.2733	Q9NSI6	Epi	NA
ENSG00000231312	ENST00000445520	AC007246.3	ENSG00000166446	CDYL2	8.97	90.9134	Q8N8U2	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231312	ENST00000438649	AC007246.3	ENSG00000172379	ARNT2	25.86	91.4702	Q9HBZ2	TF	NA
ENSG00000231312	ENST00000426083	AC007246.3	ENSG00000174306	ZHX3	67.85	91.4364	Q9H4I2	TF	NA
ENSG00000231312	ENST00000366187	AC007246.3	ENSG00000115816	CEBPZ	53.4	90.1952	Q03701	TF	NA
ENSG00000231312	ENST00000366187	AC007246.3	ENSG00000172379	ARNT2	32.61	90.7016	Q9HBZ2	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231312	ENST00000446698	AC007246.3	ENSG00000079785	DDX1	61.99	92.7747	Q92499	RBP	NA
ENSG00000231312	ENST00000449569	AC007246.3	ENSG00000056097	ZFR	112.63	94.8729	Q96KR1	RBP	NA
ENSG00000231312	ENST00000426083	AC007246.3	ENSG00000056097	ZFR	83.07	95.4359	Q96KR1	RBP	NA
ENSG00000231312	ENST00000445520	AC007246.3	ENSG00000079785	DDX1	61.82	92.843	Q92499	RBP	NA

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lncRNA-DNA interaction for MAP4K3-DT

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

LYPLA1,PCYOX1,CEBPZ,FBXO9,FAM234B,DSTYK,PEX2,PREPL,USP34,PAQR5,TBC1D24,MFSD8,ATL2,GPATCH8,DNAJC27,OSBPL9,DYNC2LI1,NFU1,PPP2CA,MCEE,CHM,STAM2,TMEM178A,NDRG3,TMEM184C,NDUFS1,RAB11FIP5,PLA2G12A,RAB6A,LAMTOR3,ACBD5,ICE2,RPRD1A,VEPH1,SH3YL1,NOL10,FBXL17,RNF6,STARD7,IMMT,AFTPH,ATP1B1,EIPR1,TTC19,RHOT1,PIK3CB,ACYP2,NDUFAF4,SCO1,COG6,ISCA1,WSB2,AMN1,CLPX,KIF3C,TCEAL1,SUPT7L,ARL1,MRPS30,PPP3CB,IAH1,CCNT2,SNX14,PTCD3,USP24,ATXN10,ATP6V1H,STX18,TRIM23,BRWD1,SLC25A46,NAPEPLD,MRPL35,ORC4,GCNT4,PPM1B,MSH3,LYPLAL1,UTP14C,ARNT2,ANXA4,NDFIP2,ARL5A,TRIM37,C2orf69,GSKIP,ITSN2,C17orf75,NCDN,HDHD2,ANKRD46,GNB5,HEATR5B,PJA2,GHITM,ACADM,TMEM9B,MAP2K4,ZHX3,SLC4A1AP,REEP5,ASXL2,UBR3,TTC8,CIAO1,PNMA8A,RDH14,LPCAT4,TLK1,TRAK2,EML4,MAP4K3,NMT1,PAIP1,GOT1,RAP1GAP,PPM1K,CCDC121,DOCK9,ACSL4,SDCCAG8,MAPRE3,RAP1GDS1,HOMER1,CADPS2,TMEM185B,PPP1R21,CRIM1,HADHB,TRAPPC13,UNC50,USP12,ATP6V1E2,GRB14,MOB4,MTIF2,NCKAP1,ZFR,USP33,FAM161B,TMEM245,NPTN,UQCC1,PDHX,CLINT1,TMEM127,C1D,MFF,MOAP1,IDH3A,TSNAX,AKTIP,SLC30A6,OAT,ATP6V1E1,CDYL2,PDE1A,STAM,NT5C2,USP3,ARPP19,LRBA,GLS,VPS54,ACP1,UEVLD,DMTN,MKKS,LDB2,COA5,IMPA1,TRMT61B,SLC30A9,SACM1L,STXBP3,ITGB1BP1,COX10,LRP11,HCCS,SKP1,BBS7,ATPAF1,PCMTD1,CYFIP2,RCHY1,WASL,YPEL5,PPM1H,TTC33,SUCLA2,RTN4,WBP1,CUL3,RAD17,MAPK10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for MAP4K3-DT

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for MAP4K3-DT

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_27534	ENSG00000231312.5	chr2	39474840	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_27679	ENSG00000231312.5	chr2	39474947	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_27684	ENSG00000231312.5	chr2	39474971	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_27694	ENSG00000231312.5	chr2	39474974	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_27704	ENSG00000231312.5	chr2	39474983	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_27709	ENSG00000231312.5	chr2	39474987	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_27784	ENSG00000231312.5	chr2	39475044	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_28129	ENSG00000231312.5	chr2	39477015	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_28149	ENSG00000231312.5	chr2	39477051	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_28199	ENSG00000231312.5	chr2	39477116	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_30434	ENSG00000231312.5	chr2	39494606	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_30584	ENSG00000231312.5	chr2	39496107	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_30644	ENSG00000231312.5	chr2	39496205	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_30679	ENSG00000231312.5	chr2	39496248	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_30719	ENSG00000231312.5	chr2	39497243	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002
LncEditing_30744	ENSG00000231312.5	chr2	39497304	+	antisense	AC007246.3	ENST00000449569.4	antisense	AC007246.3-002

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000231312	LncEditing_27534	LIHC	chr2_39474840_+	1.325780e+00	1.191700e+00	6.501118e+00	4.638652e+00	3.506893e-06	4.416700e-06	UP
ENSG00000231312	LncEditing_27694	LIHC	chr2_39474974_+	1.360371e+00	1.071402e+00	2.902753e+00	4.305769e+00	1.664065e-05	2.001375e-05	UP
ENSG00000231312	LncEditing_27704	LIHC	chr2_39474983_+	1.470778e+00	1.182966e+00	3.182979e+00	3.969002e+00	7.217440e-05	8.378506e-05	UP
ENSG00000231312	LncEditing_27709	LIHC	chr2_39474987_+	1.309236e+00	1.228645e+00	1.091011e+01	3.075822e+00	2.099230e-03	2.269208e-03	UP
ENSG00000231312	LncEditing_30719	LIHC	chr2_39497243_+	1.617218e+00	1.205547e+00	2.359459e+00	4.245763e+00	2.178506e-05	2.608346e-05	UP
ENSG00000231312	LncEditing_27534	KIRC	chr2_39474840_+	1.134905e+00	1.123913e+00	7.122215e+01	3.274395e+00	1.058883e-03	1.155287e-03	UP
ENSG00000231312	LncEditing_27679	KIRC	chr2_39474947_+	1.339457e+00	1.055538e+00	2.909774e+00	3.540353e+00	3.995923e-04	4.444567e-04	UP
ENSG00000231312	LncEditing_27694	KIRC	chr2_39474974_+	1.190879e+00	1.085876e+00	7.509330e+00	2.978655e+00	2.895163e-03	3.086236e-03	UP
ENSG00000231312	LncEditing_27704	KIRC	chr2_39474983_+	1.301532e+00	1.102004e+00	4.165260e+00	2.465588e+00	1.367885e-02	1.409623e-02	UP
ENSG00000231312	LncEditing_27709	KIRC	chr2_39474987_+	1.278331e+00	1.078153e+00	4.070025e+00	4.764426e+00	1.893924e-06	2.357095e-06	UP
ENSG00000231312	LncEditing_28129	KIRC	chr2_39477015_+	1.218172e+00	1.112922e+00	7.670724e+00	2.465935e+00	1.366563e-02	1.409623e-02	UP
ENSG00000231312	LncEditing_28149	KIRC	chr2_39477051_+	1.550355e+00	1.099578e+00	2.017557e+00	3.422781e+00	6.198409e-04	6.853300e-04	UP
ENSG00000231312	LncEditing_28199	KIRC	chr2_39477116_+	1.319600e+00	1.108365e+00	3.973486e+00	2.214918e+00	2.676569e-02	2.716791e-02	UP
ENSG00000231312	LncEditing_30679	KIRC	chr2_39496248_+	1.386350e+00	1.073133e+00	2.706631e+00	3.915963e+00	9.004392e-05	1.034044e-04	UP
ENSG00000231312	LncEditing_27679	GBM	chr2_39474947_+	1.053616e+00	9.321590e-01	5.659288e+00	2.610242e+00	9.047831e-03	9.891481e-03	UP
ENSG00000231312	LncEditing_27694	UVM	chr2_39474974_+	1.182181e+00	1.030952e+00	5.063989e+00	2.603777e+00	9.220274e-03	1.089669e-02	UP
ENSG00000231312	LncEditing_28199	UVM	chr2_39477116_+	1.909070e+00	9.835409e-01	1.045136e+00	3.098576e+00	1.944533e-03	2.683239e-03	UP
ENSG00000231312	LncEditing_27679	BLCA	chr2_39474947_+	1.183563e+00	1.005199e+00	4.243484e+00	3.556700e+00	3.755427e-04	4.346707e-04	UP
ENSG00000231312	LncEditing_27684	BLCA	chr2_39474971_+	1.261357e+00	1.021678e+00	3.289081e+00	2.302296e+00	2.131850e-02	2.188163e-02	UP
ENSG00000231312	LncEditing_27694	BLCA	chr2_39474974_+	1.199185e+00	9.659704e-01	3.205090e+00	3.801913e+00	1.435829e-04	1.705439e-04	UP
ENSG00000231312	LncEditing_27704	BLCA	chr2_39474983_+	1.193329e+00	1.024901e+00	4.555652e+00	2.097367e+00	3.596110e-02	3.636216e-02	UP
ENSG00000231312	LncEditing_27709	BLCA	chr2_39474987_+	1.240215e+00	1.000904e+00	3.233249e+00	3.797197e+00	1.463415e-04	1.730647e-04	UP
ENSG00000231312	LncEditing_27684	ACC	chr2_39474971_+	1.383152e+00	9.695723e-01	1.951072e+00	2.035693e+00	4.178115e-02	4.261345e-02	UP
ENSG00000231312	LncEditing_27694	ACC	chr2_39474974_+	1.217333e+00	9.607479e-01	2.928311e+00	2.310987e+00	2.083359e-02	2.250380e-02	UP
ENSG00000231312	LncEditing_27709	ACC	chr2_39474987_+	1.377713e+00	9.396823e-01	1.811495e+00	3.237173e+00	1.207201e-03	2.102336e-03	UP
ENSG00000231312	LncEditing_27694	KICH	chr2_39474974_+	2.214298e+00	1.388796e+00	1.485852e+00	3.280694e+00	1.035519e-03	2.111449e-03	UP
ENSG00000231312	LncEditing_27709	KICH	chr2_39474987_+	2.554168e+00	1.399144e+00	1.151664e+00	3.078596e+00	2.079782e-03	3.863772e-03	UP
ENSG00000231312	LncEditing_27784	KICH	chr2_39475044_+	3.011748e+00	1.611268e+00	1.108150e+00	2.289502e+00	2.205022e-02	2.560275e-02	UP
ENSG00000231312	LncEditing_28149	KICH	chr2_39477051_+	3.254754e+00	1.562818e+00	9.448237e-01	2.470265e+00	1.350130e-02	1.734109e-02	UP
ENSG00000231312	LncEditing_28199	KICH	chr2_39477116_+	2.495424e+00	1.668084e+00	1.720895e+00	1.992721e+00	4.629195e-02	4.708038e-02	UP
ENSG00000231312	LncEditing_27679	PCPG	chr2_39474947_+	1.130930e+00	1.017463e+00	6.555926e+00	2.169824e+00	3.002021e-02	3.124159e-02	UP
ENSG00000231312	LncEditing_30719	PCPG	chr2_39497243_+	1.191611e+00	9.812310e-01	3.568256e+00	3.114292e+00	1.843871e-03	2.240303e-03	UP
ENSG00000231312	LncEditing_30744	PCPG	chr2_39497304_+	1.237911e+00	1.006397e+00	3.347740e+00	2.381845e+00	1.722616e-02	1.848104e-02	UP
ENSG00000231312	LncEditing_27679	KIRP	chr2_39474947_+	1.246732e+00	9.550095e-01	2.600344e+00	2.566450e+00	1.027453e-02	1.103652e-02	UP
ENSG00000231312	LncEditing_27684	KIRP	chr2_39474971_+	1.207020e+00	9.806404e-01	3.337185e+00	2.334894e+00	1.954897e-02	2.041276e-02	UP
ENSG00000231312	LncEditing_27694	KIRP	chr2_39474974_+	1.173332e+00	9.285741e-01	2.962771e+00	3.348377e+00	8.128635e-04	9.784871e-04	UP
ENSG00000231312	LncEditing_27704	KIRP	chr2_39474983_+	1.216762e+00	9.635594e-01	2.970868e+00	2.393529e+00	1.668718e-02	1.771287e-02	UP
ENSG00000231312	LncEditing_27709	KIRP	chr2_39474987_+	1.161641e+00	9.683710e-01	3.809055e+00	3.235370e+00	1.214853e-03	1.427930e-03	UP
ENSG00000231312	LncEditing_28149	KIRP	chr2_39477051_+	1.356043e+00	9.818918e-01	2.146998e+00	2.476563e+00	1.326541e-02	1.418136e-02	UP
ENSG00000231312	LncEditing_30679	KIRP	chr2_39496248_+	1.341130e+00	9.495876e-01	2.007724e+00	3.722755e+00	1.970610e-04	2.471520e-04	UP
ENSG00000231312	LncEditing_27684	CHOL	chr2_39474971_+	4.271567e+00	2.308607e+00	1.126453e+00	2.127046e+00	3.341627e-02	3.709647e-02	UP
ENSG00000231312	LncEditing_27709	CHOL	chr2_39474987_+	3.808111e+00	2.041417e+00	1.111723e+00	2.730175e+00	6.330064e-03	1.231003e-02	UP
ENSG00000231312	LncEditing_30434	CHOL	chr2_39494606_+	4.933685e+00	2.201814e+00	8.591262e-01	2.721704e+00	6.494630e-03	1.231003e-02	UP
ENSG00000231312	LncEditing_30644	CHOL	chr2_39496205_+	4.414190e+00	2.057540e+00	9.080773e-01	2.967976e+00	2.997679e-03	7.399115e-03	UP
ENSG00000231312	LncEditing_27534	LUAD	chr2_39474840_+	1.243535e+00	1.028364e+00	3.648357e+00	4.805934e+00	1.540303e-06	1.878736e-06	UP
ENSG00000231312	LncEditing_27679	LUAD	chr2_39474947_+	1.202717e+00	1.039151e+00	4.741763e+00	4.110154e+00	3.953954e-05	4.517315e-05	UP
ENSG00000231312	LncEditing_27684	LUAD	chr2_39474971_+	1.162199e+00	1.060996e+00	7.608147e+00	2.114322e+00	3.448775e-02	3.472836e-02	UP
ENSG00000231312	LncEditing_27694	LUAD	chr2_39474974_+	1.187081e+00	1.015659e+00	4.444399e+00	3.691589e+00	2.228577e-04	2.455404e-04	UP
ENSG00000231312	LncEditing_27709	LUAD	chr2_39474987_+	1.135885e+00	1.061891e+00	1.029013e+01	2.339104e+00	1.933008e-02	1.960169e-02	UP
ENSG00000231312	LncEditing_30719	LUAD	chr2_39497243_+	1.294461e+00	1.049425e+00	3.303023e+00	2.965256e+00	3.024315e-03	3.170771e-03	UP
ENSG00000231312	LncEditing_27684	PRAD	chr2_39474971_+	1.230906e+00	1.066183e+00	4.824721e+00	2.362431e+00	1.815551e-02	1.899098e-02	UP
ENSG00000231312	LncEditing_27694	PRAD	chr2_39474974_+	1.200875e+00	1.033515e+00	4.618386e+00	2.825613e+00	4.719030e-03	5.212985e-03	UP
ENSG00000231312	LncEditing_27704	PRAD	chr2_39474983_+	1.282020e+00	1.067142e+00	3.778330e+00	2.032597e+00	4.209327e-02	4.266138e-02	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000231312	LncEditing_30584	-6.714588e-01	3.349861e-02	4.478144e-02
ENSG00000231312	LncEditing_27684	-3.847412e-01	1.971016e-04	3.747413e-04

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000231312	ENSG00000051382	PIK3CB	ACC,CHOL,GBM,KICH,LGG,LIHC		GBM
ENSG00000231312	ENSG00000065154	OAT	ACC,GBM,KICH,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000069966	GNB5	ACC,GBM,KICH,KIRC,LGG		GBM
ENSG00000231312	ENSG00000102471	NDFIP2	ACC,GBM,KICH,LGG,UVM		GBM
ENSG00000231312	ENSG00000115419	GLS	ACC,CHOL,GBM,KICH,LGG,LIHC		GBM
ENSG00000231312	ENSG00000136143	SUCLA2	ACC,GBM,KICH,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000152154	TMEM178A	ACC,BLCA,CHOL,GBM,KICH,KIRC,KIRP,PCPG,PRAD		GBM
ENSG00000231312	ENSG00000158856	DMTN	ACC,CHOL,GBM,LGG,LIHC		GBM
ENSG00000231312	ENSG00000162869	PPP1R21	ACC,CHOL,GBM,KICH,LGG,LIHC,PCPG,UVM		GBM
ENSG00000231312	ENSG00000084444	FAM234B	BLCA,GBM,KIRP,LGG,PCPG		GBM
ENSG00000231312	ENSG00000109339	MAPK10	BLCA,GBM,KICH,KIRC,LGG,PCPG		GBM
ENSG00000231312	ENSG00000161048	NAPEPLD	BLCA,GBM,KICH,KIRC,LGG,UVM		GBM
ENSG00000231312	ENSG00000176454	LPCAT4	BLCA,GBM,LGG,LIHC,PCPG		GBM
ENSG00000231312	ENSG00000020129	NCDN	CHOL,GBM,LGG,LIHC,UVM		GBM
ENSG00000231312	ENSG00000047249	ATP6V1H	CHOL,GBM,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000055163	CYFIP2	CHOL,GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000231312	ENSG00000084731	KIF3C	CHOL,GBM,LGG,PCPG,UVM		GBM
ENSG00000231312	ENSG00000111110	PPM1H	CHOL,GBM,KIRC,LGG,PCPG		GBM
ENSG00000231312	ENSG00000113595	TRIM23	CHOL,GBM,KICH,LGG,UVM		GBM
ENSG00000231312	ENSG00000115310	RTN4	CHOL,GBM,KICH,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000128989	ARPP19	CHOL,GBM,KICH,LGG,UVM		GBM
ENSG00000231312	ENSG00000129625	REEP5	CHOL,GBM,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000131100	ATP6V1E1	CHOL,GBM,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000156050	FAM161B	CHOL,GBM,KICH,LGG,PCPG		GBM
ENSG00000231312	ENSG00000166446	CDYL2	CHOL,GBM,KICH,KIRP,LGG		GBM
ENSG00000231312	ENSG00000176871	WSB2	CHOL,GBM,KICH,LGG,UVM		GBM
ENSG00000231312	ENSG00000185658	BRWD1	CHOL,GBM,KICH,LGG,PCPG,UVM		GBM
ENSG00000231312	ENSG00000065559	MAP2K4	GBM,KICH,LGG,PCPG,UVM		GBM
ENSG00000231312	ENSG00000076864	RAP1GAP	GBM,KIRC,KIRP,LGG,LIHC,UVM		GBM
ENSG00000231312	ENSG00000084764	MAPRE3	GBM,KICH,KIRC,KIRP,LGG,PCPG		GBM
ENSG00000231312	ENSG00000101079	NDRG3	GBM,KICH,LGG,LIHC,PCPG		GBM
ENSG00000231312	ENSG00000107758	PPP3CB	GBM,KICH,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000108395	TRIM37	GBM,KICH,LGG,PCPG,UVM		GBM
ENSG00000231312	ENSG00000113638	TTC33	GBM,KICH,LGG,PCPG,UVM		GBM
ENSG00000231312	ENSG00000115137	DNAJC27	GBM,KICH,KIRC,LGG,PCPG		GBM
ENSG00000231312	ENSG00000115252	PDE1A	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000231312	ENSG00000120053	GOT1	GBM,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000120256	LRP11	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000231312	ENSG00000123545	NDUFAF4	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000231312	ENSG00000127870	RNF6	GBM,KICH,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000138078	PREPL	GBM,KICH,KIRC,KIRP,LGG,LIHC,PCPG,UVM		GBM
ENSG00000231312	ENSG00000138686	BBS7	GBM,KICH,KIRP,LGG,PCPG		GBM
ENSG00000231312	ENSG00000138698	RAP1GDS1	GBM,KIRP,LGG,PCPG,UVM		GBM
ENSG00000231312	ENSG00000143153	ATP1B1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000231312	ENSG00000144357	UBR3	GBM,KICH,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000151743	AMN1	GBM,KICH,KIRC,KIRP,LGG,PCPG		GBM
ENSG00000231312	ENSG00000152413	HOMER1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000231312	ENSG00000156642	NPTN	GBM,KIRC,KIRP,LGG,LIHC,UVM		GBM
ENSG00000231312	ENSG00000162065	TBC1D24	GBM,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000163644	PPM1K	GBM,KICH,KIRC,KIRP,UVM		GBM
ENSG00000231312	ENSG00000165678	GHITM	GBM,KICH,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000165943	MOAP1	GBM,KICH,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000166411	IDH3A	GBM,KIRC,KIRP,LGG,LIHC,UVM		GBM
ENSG00000231312	ENSG00000169744	LDB2	GBM,KICH,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000175582	RAB6A	GBM,KICH,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000178074	C2orf69	GBM,KIRC,KIRP,LGG,UVM		GBM
ENSG00000231312	ENSG00000182013	PNMA8A	GBM,KICH,LGG,PCPG,UVM		GBM
ENSG00000231312	ENSG00000186106	ANKRD46	GBM,KICH,KIRC,KIRP,UVM		GBM
ENSG00000231312	ENSG00000198961	PJA2	GBM,KICH,KIRP,LGG,UVM		GBM

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000231312.5	ENST00000426083.4	46	175	35
ENSG00000231312.5	ENST00000443038.1	123	470	99
ENSG00000231312.5	ENST00000422128.4	71	45	260
ENSG00000231312.5	ENST00000449569.4	125	558	181
ENSG00000231312.5	ENST00000445520.4	159	646	167
ENSG00000231312.5	ENST00000366187.2	67	355	152
ENSG00000231312.5	ENST00000446698.4	54	481	317
ENSG00000231312.5	ENST00000438649.4	83	299	550
ENSG00000231312.5	ENST00000425775.1	125	1456	1079
ENSG00000231312.5	ENST00000415640.1	101	523	218
ENSG00000231312.5	ENST00000451547.1	127	77	457

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential