 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | TMEM119,SENP7,ADGRA2,FSTL1,CDON,KLF12,P3H4,FKBP10,SEPTIN7,CNRIP1,DACT3,ARHGAP31,ADAMTS7,LDB2,DSE,NREP,CCDC88A,CHD9,CDH11,FKBP7,GLT8D2,OLFML1,LIX1L,ZFP1,GLI3,COL6A3,RNF144A,FMNL3,TIA1,NRIP2,SH3PXD2A,EFS,NID1,PLXDC1,DCHS1,PCDH18 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000230630 | ENST00000417354 | exon_skip_21610 | chr1:9737497-9737554 | -11.68 | -0.2716 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_287874 | chr17:29085603-29085648 | -8.68 | -0.2411 | MYO18A | ENST00000527372 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_361434 | chr21:25997359-25997416 | -9.01 | -0.2435 | APP | ENST00000346798 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_451515 | chr6:41080810-41080897 | -13.78 | -0.1701 | NFYA | ENST00000341376 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000230630 | ENST00000417354 | exon_skip_44853 | chr10:104010815-104010908 | -10.84 | -0.1902 | SLK | ENST00000369755 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_44998 | chr10:110132304-110132400 | -13.68 | -0.1900 | ADD3 | ENST00000356080 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_48713 | chr10:34336198-34336243 | -8.86 | -0.2161 | PARD3 | ENST00000374789 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_302276 | chr19:10808568-10808580 | -7.06 | -1.4120 | DNM2 | ENST00000355667 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_423795 | chr4:55888887-55888932 | -8.11 | -0.3119 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_434332 | chr5:34813573-34813660 | -11.83 | -0.1536 | RAI14 | ENST00000265109,ENST00000428746,ENST00000503673 | In-frame | | ENSG00000230630 | ENST00000417354 | exon_skip_456460 | chr6:17771113-17771218 | -18.14 | -0.2016 | KIF13A | ENST00000259711 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000230630 | ENSG00000053702 | NRIP2 | BRCA,MESO,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000107957 | SH3PXD2A | BRCA,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000140937 | CDH11 | BRCA,OV,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000151692 | RNF144A | BRCA,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000163359 | COL6A3 | BRCA,MESO,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000177200 | CHD9 | BRCA,PAAD,SARC,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000189184 | PCDH18 | BRCA,MESO,OV,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000079150 | FKBP7 | MESO,OV,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000116962 | NID1 | MESO,OV,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000119865 | CNRIP1 | MESO,OV,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000120820 | GLT8D2 | MESO,OV,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000161381 | PLXDC1 | MESO,OV,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000169744 | LDB2 | MESO,OV,PAAD,TGCT,UCEC | | UCEC | | ENSG00000230630 | ENSG00000271601 | LIX1L | MESO,OV,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000020181 | ADGRA2 | OV,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000031081 | ARHGAP31 | OV,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000122545 | SEPTIN7 | OV,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000166341 | DCHS1 | OV,PAAD,TGCT,UCEC,UCS | | UCEC | | ENSG00000230630 | ENSG00000064309 | CDON | PAAD,SARC,TGCT,UCEC,UCS | | UCEC |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000230630.2 | ENST00000417354.2 | 44 | 343 | 209 |
|
