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lncRNA: ENSG00000230565

Summary for ZNF32-AS2

Gene summary

Gene information	Ensembl ID	ENSG00000230565
	Gene symbol	ZNF32-AS2
	Gene name	ZNF32 antisense RNA 2
	HGNC	23593
	Entrez ID	414208
	Gene type	antisense
	Synonyms	10q11.21\|ZNF32-AS2
	UniProtAcc

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Structure and expression level for ZNF32-AS2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000230565	3.699301e+01	1.559496e+00	3.847044e-01	4.053753e+00	5.040000e-05	2.352020e-04	UP	CHOL

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000230565	5.847793e-01	2.460597e-05	CHOL	1.179007e-04

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lncRNA-Protein interaction for ZNF32-AS2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000230565	ENST00000418966	ZNF32-AS2	ENSG00000121741	ZMYM2	29.43	90.4722	Q9UBW7	Epi	NA
ENSG00000230565	ENST00000418966	ZNF32-AS2	ENSG00000156650	KAT6B	29.29	90.8197	Q8WYB5	Epi	NA
ENSG00000230565	ENST00000418966	ZNF32-AS2	ENSG00000100888	CHD8	70.32	91.7283	Q9HCK8	Epi	ChIP-seq
ENSG00000230565	ENST00000418966	ZNF32-AS2	ENSG00000177200	CHD9	62.65	90.5606	Q3L8U1	Epi	NA
ENSG00000230565	ENST00000418966	ZNF32-AS2	ENSG00000171988	JMJD1C	55.43	92.2809	Q15652	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for ZNF32-AS2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

RPAP2,CPLANE1,PUM1,ANAPC1,BRD1,MZF1,TTC31,SUGP2,N4BP2L2,DMTF1,SLF2,FAM193A,UNKL,PHF10,PIGG,LRRC1,ZBED4,ZFP14,MSANTD2,TUBGCP6,CCDC14,RSF1,SMARCC2,CLK4,PARG,ZBED5,SETD2,TTC14,CREB1,SLC2A11,SCYL3,OGT,CLK2,MYEF2,FAM219B,ARID4B,ASH1L,POLG2,TUT4,FAN1,MORC2,THOC2,CTC1,RABL2A,RPAIN,IGF1R,PEAK1,RFX7,IFT172,XPNPEP3,MBD5,RSRC2,TTC21B,NPAT,NAA25,SETD5,ZFP62,GON4L,MDN1,SOCS4,CHD9,BRAF,YTHDC1,ORC2,PHC3,CUL9,LRRC37B,DHX35,INTS2,SUPT20H,DCUN1D2,HIF1AN,FIGNL1,NR2C2,PAN2,SLC25A16,SMARCAD1,GIGYF1,MBTPS1,FAM193B,ATG2B,ZFC3H1,MBTD1,SP3,DNASE1,ARHGEF7,DDX42,CEP192,TTC3,EIF4A1,ATF7IP,ZFP3,MARCHF6,SWT1,EIF4ENIF1,LTN1,HERC4,ZMYM1,RNF214,AMMECR1L,TTC17,CDK13,SMG7,LENG8,SMURF2,CEP57,MIB1,DIP2C,PPWD1,RELCH,VEZF1,MLLT6,PIBF1,RTL6,AHI1,ZNF70,CLASP1,INO80D,NHLRC3,DDX55,THOC1,PROSER1,WDR59,ZNF25,WAPL,NUMA1,CHD8,PHF12,UGGT2,C2CD3,UBR4,SNRNP48,RC3H1,ZNF44,SLC12A6,SMG1,DENND11,RIMKLB,LTO1,PHC1,METAP1D,SACS,PUS7L,UTP14C,CEP83,EP400,LIN54,UBN2,ERCC6L2,LRIG2,SEC23IP,ABHD18,NEMF,RTTN,IWS1,MECP2,NBPF11,ACIN1,ZNF41,ZC3H8,LATS1,SART3,ENOSF1,MAU2,PAXBP1,FNBP4,MMS19,KMT2D,BOD1L1,MLLT10,CHD2,TSTD2,MED23,ATG14,GOLGB1,OTUD4,ZNF720,HEMK1,MIER3,GPBP1,C2orf68,WAC,MRE11,ZSWIM8,GK5,NOL4L,RBM6,TRMT13,ZNF862,TP53BP1,ARID4A,NT5C2,RNF115,ATP6V0A2,CCDC142,SMAD4,CBX5,EPM2AIP1,TIMM23B,SYNGAP1,WDR27,HECTD4,EXOC7,KHDC4,TPR,NOC3L,HPS4,PNISR,SFPQ,UBE3B,ATAD2B,ZNF10,ATAT1,INVS,PLCG1,PRKAB2,RALGAPA1,CEP120,ANGEL2,TGFBRAP1,WASHC2C,MYSM1,ARID2,TAF1D,MKS1,TTI1,SPIN3,SLX4IP,HEATR1,GTF3C3,CCNL2,TET3,PRR14L,RNPC3,UBXN7,LRCH3,SON,DOP1A,KIAA2026,KANSL3,SCAF4,CCNT2,PTCD3,NFRKB,ZNF91,CHD6,AGO2,BRWD1,ANKS6,RBM26,PURB,RBM25,RO60,TBCK,ZFP30,SP4,SMARCC1,SETD6,KANSL1L,POLI,UBR5,PRPF39,KIAA0753,TRIM45,SRRM2,DCAF17,HEATR5B,EPC1,LCOR,MAP4K5,CMTR2,CEP44,CENPC,RBM41,HERC2,ARGLU1,YJEFN3,LIG4,CCNL1,CELF1,TMEM161B,EPG5,RBM45,NFXL1,WRN,PMS1,DDX31,ADCY6,TIA1,ZNF83,KANSL1,NSUN6,ZNF8,DNMT3A,SNRNP200,ERCC3,SZT2,HELZ,ELF2,CRAMP1,LUC7L,ZNF43,PNN,CCAR1,TMCC1,SEMA4G,UBE2V1,DGKD,CENPJ,MAPKAPK5,KMT2A,TPP2,REV1,HINFP,NR2C1,SOS1,RUFY2,RBM33,NOL8,ZDHHC21,WDR37,AGAP6,HACE1,RBM39,GPATCH8,MSL2,STAG1,NRF1,ITFG2,ZXDC,INTS3,PIGL,ZC3H7A,ATRX,RBM28,DCAF8,IKZF5,SF3B1,NHLRC2,ZBTB5,ZFYVE26,OGA,ZFP69,RASAL2,PAN3,CEP350,MED28,KMT2E,CLASP2,DCAF16,SUPT7L,MORC3,RICTOR,S100PBP,CALCOCO1,MTG1,USP24,KAT6B,FBXW8,TOGARAM1,FAM76B,POGZ,RBMX,RBM4B,PCNT,RBM14,NOTCH1,ADNP,MAP3K12,NCOA5,ARID1B,FUBP1,DCAF5,PRDM4,THAP9,EZH1,MRNIP,THAP6,KIDINS220,SS18L1,DHX15,DDX17,SENP7,FMR1,RAD52,MARF1,GOLGA3,CEP290,TRPM7,WSB1,GPALPP1,PHIP,VPS52,ALS2,ELK4,TIGD1,NSD2,TRIM52,FBXO11,CCDC93,STK36,TTC32,ZMAT1,GOLGA8B,CSGALNACT2,STRADA,VPS13C,DIDO1,APPBP2,FKTN,SETD4,ARNT,CREBBP,PIKFYVE,AARSD1,PUM2,RBM5,DHX36,NKTR,CEP162,C19orf71,ZNF17,TTLL3,RNF169,ZNF84,BAZ2B,PARP6,BICRAL,WDR33,PRPF40B,JMJD1C,ASXL1,TSC1,PRPF4B,CCDC57,TET2,PIP5K1A

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ZNF32-AS2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

MGST2,GSTO1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for ZNF32-AS2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000230565	ENSG00000007545	CRAMP1	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000067369	TP53BP1	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000075391	RASAL2	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000094916	CBX5	BRCA,CHOL,GBM,LAML,UCS	CHOL
ENSG00000230565	ENSG00000109685	NSD2	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000110844	PRPF40B	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000111752	PHC1	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000116580	GON4L	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000119772	DNMT3A	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000125633	CCDC93	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000132680	KHDC4	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000137343	ATAT1	BRCA,CHOL,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000138002	IFT172	BRCA,CHOL,GBM,LAML,UCS	CHOL
ENSG00000230565	ENSG00000139625	MAP3K12	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000144134	RABL2A	BRCA,CHOL,GBM,LAML,UCS	CHOL
ENSG00000230565	ENSG00000144445	KANSL1L	BRCA,CHOL,GBM,LAML,UCS	CHOL
ENSG00000230565	ENSG00000163257	DCAF16	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000163482	STK36	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000166012	TAF1D	BRCA,CHOL,GBM,LAML,LGG	CHOL
ENSG00000230565	ENSG00000167615	LENG8	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000168014	C2CD3	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000183397	C19orf71	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000185158	LRRC37B	BRCA,CHOL,GBM,LAML,LGG	CHOL
ENSG00000230565	ENSG00000185917	SETD4	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000197183	NOL4L	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000197283	SYNGAP1	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000198707	CEP290	BRCA,CHOL,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000198920	KIAA0753	BRCA,CHOL,GBM,LAML,LGG	CHOL
ENSG00000230565	ENSG00000204130	RUFY2	BRCA,CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000214021	TTLL3	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000250067	YJEFN3	BRCA,CHOL,GBM,LGG,UCS	CHOL
ENSG00000230565	ENSG00000108854	SMURF2	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000119285	HEATR1	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000134253	TRIM45	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000137269	LRRC1	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000140443	IGF1R	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000149716	LTO1	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000165138	ANKS6	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000166135	HIF1AN	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000174233	ADCY6	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000178761	FAM219B	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000188636	RTL6	CHOL,GBM,LAML,LGG,UCS	CHOL
ENSG00000230565	ENSG00000275023	MLLT6	CHOL,GBM,LAML,LGG,UCS	CHOL

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000230565	ENST00000418966	MGST2	ENSG00000085871	ENST00000265498	-0.1205	588	-	CHOL
ENSG00000230565	ENST00000418966	GSTO1	ENSG00000148834	ENST00000539281	-0.4436	21	-	CHOL
ENSG00000230565	ENST00000418966	GSTO1	ENSG00000148834	ENST00000369710	-0.4436	21	-	CHOL
ENSG00000230565	ENST00000418966	GSTO1	ENSG00000148834	ENST00000369713	-0.4436	23	-	CHOL

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000230565.1	ENST00000418966.1	59	357	178

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential