 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLIRP,LSM5,RALY,DDX56,PPIE,DDX49,IRF3,ATF4,USF1,NELFE,EIF3G,RBM42,E4F1,THOC6,MBD3,LSM7,SNRPA | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
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| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000230555 | ENST00000442526 | exon_skip_89597 | chr12:6672349-6672532 | -24.48 | -0.1898 | ZNF384 | ENST00000361959,ENST00000396801 | In-frame | | ENSG00000230555 | ENST00000442526 | exon_skip_140339 | chr16:635611-635774 | -24.32 | -0.1590 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_426982 | chr4:163515312-163515461 | -16.83 | -0.1153 | TMA16 | ENST00000358572 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_137309 | chr16:66558189-66558348 | -15.29 | -0.1026 | CKLF | ENST00000264001 | In-frame | | ENSG00000230555 | ENST00000442526 | exon_skip_326741 | chr2:73946718-73946906 | -19.57 | -0.1305 | DGUOK | ENST00000264093 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_363747 | chr22:23877720-23877869 | -24.22 | -0.1682 | SLC2A11 | ENST00000345044 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_382458 | chr3:38131595-38131638 | -13.09 | -0.3850 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_442657 | chr5:74730259-74730398 | -16.64 | -0.1434 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_466113 | chr7:48099669-48099787 | -8.81 | -0.1573 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_334333 | chr2:227330625-227330846 | -17.08 | -0.1035 | MFF | ENST00000353339 | Frame-shift | | ENSG00000230555 | ENST00000442526 | exon_skip_90104 | chr12:10709907-10710114 | -26.21 | -0.1379 | YBX3 | ENST00000228251 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000230555.2 | ENST00000442526.2 | 61 | 349 | 164 |
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