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lncRNA: ENSG00000229847

Summary for EMX2OS

Gene summary

Gene information	Ensembl ID	ENSG00000229847
	Gene symbol	EMX2OS
	Gene name	EMX2 opposite strand/antisense RNA
	HGNC	18511
	Entrez ID	196047
	Gene type	antisense
	Synonyms	EMX2OS\|10q26.11
	UniProtAcc

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Structure and expression level for EMX2OS

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000229847	5.349699e+02	-2.806332e+00	5.860299e-01	-4.788718e+00	1.680000e-06	1.310000e-05	DOWN	GBM
ENSG00000229847	4.799218e+02	-4.364377e+00	1.320734e+00	-3.304508e+00	9.514330e-04	7.612463e-03	DOWN	CESC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000229847	-6.642382e-01	1.281930e-12	KICH	3.973983e-11
ENSG00000229847	-4.459110e-01	4.852132e-31	KIRC	2.079485e-29

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lncRNA-Protein interaction for EMX2OS

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000229847	ENST00000551288	EMX2OS	ENSG00000108799	EZH1	88.48	97.1275	Q92800	Epi	ChIP-seq
ENSG00000229847	ENST00000424371	EMX2OS	ENSG00000156650	KAT6B	13.8	93.9541	Q8WYB5	Epi	NA
ENSG00000229847	ENST00000424371	EMX2OS	ENSG00000080503	SMARCA2	47.86	93.3024	P51531	Epi	NA
ENSG00000229847	ENST00000440007	EMX2OS	ENSG00000156650	KAT6B	97.48	96.9947	Q8WYB5	Epi	NA
ENSG00000229847	ENST00000551288	EMX2OS	ENSG00000156650	KAT6B	87.75	97.9798	Q8WYB5	Epi	NA
ENSG00000229847	ENST00000423419	EMX2OS	ENSG00000166313	APBB1	40.36	91.1826	O00213	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000229847	ENST00000424371	EMX2OS	ENSG00000174282	ZBTB4	49.28	91.3866	Q9P1Z0	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000229847	ENST00000551288	EMX2OS	ENSG00000159082	SYNJ1	118.57	95.0949	O43426	RBP	NA

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lncRNA-DNA interaction for EMX2OS

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF9,CTBP2,NISCH,FAM126B,PRKCZ,PREPL,ZBTB4,DNAJC27,PKP4,ZRANB1,KLHL2,NICN1,FAM168B,DIP2C,RAB11FIP5,IFT88,EPB41L1,SIPA1L1,ITSN1,ATP1B1,RUNDC1,B4GAT1,APBB1,SERINC1,LZTFL1,LANCL1,RAB11FIP2,VAMP2,IQCA1,KAT6B,MTURN,SLC45A4,TECPR2,CLCN6,ALDH6A1,BMPR1A,USP54,NAPEPLD,PRKCQ,EMX2,IL17RD,DCTN1,CLSTN1,NEBL,TBC1D9,CPLANE2,EZH1,CCDC149,GNB5,KCTD1,WDR47,MIGA1,STK24,BBS12,MBD5,ATE1,PRKAA2,PNMA8A,CARMIL1,WDR31,PPM1K,ASRGL1,ACADSB,USP12,LPIN2,PTPN13,TRIM44,SLC39A10,FAM161B,SASH1,ZMYM3,TMEM245,HIF1AN,SYNJ1,RERE,SALL1,MOAP1,PITPNA,PLS1,FAM171A1,SORBS2,ARHGAP29,RAB3GAP1,BTBD9,GLS,SMAD4,NIPAL3,KIF3A,SYNGAP1,PAFAH1B1,BSCL2,SORT1,IP6K1,PAX8,ABLIM1,MAPK10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

PARD3B,SORBS2,PAFAH1B1,CDKL5,RSG1,KLHL2,FAM73A,SMARCA2,CAB39,EMX2,KCTD1,RAPGEF2,PITPNA,RAB11FIP2,PRKCQ,SLC39A10,DCTN1,CABLES1,SIPA1L1,SYNGAP1,SLK,NICN1,SALL1,TMEM245,TRIM44,RAB3GAP1,EPB41L1,NAPEPLD,NLK,USP12,MAPK10,ITSN1,WDR31,USP54,ZMYM3,VAMP2,ZBTB4,TBC1D9,FAM8A1,DNAJC27,PREPL,MOAP1,LRRC16A,AKAP11,RERE,LANCL1,PPM1K,KAT6B,MYO6,FAM126B,APC,SOWAHA,LPIN2,ALDH6A1,PNMAL1,FAM161B,ATP1A1,IL17RD

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for EMX2OS

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

RPL35A,UXT,KXD1,MYDGF,APRT,BANF1,NOP16,NUDT1,TMEM208,RPS17,PGLS

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for EMX2OS

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000229847	ENSG00000010322	NISCH	CESC,GBM,KIRC,LGG,UCS		GBM
ENSG00000229847	ENSG00000011021	CLCN6	CESC,GBM,KICH,KIRC,KIRP		CESC,GBM
ENSG00000229847	ENSG00000032742	IFT88	CESC,KICH,KIRC,KIRP,OV		CESC
ENSG00000229847	ENSG00000106771	TMEM245	CESC,GBM,KICH,KIRC,KIRP,LGG		CESC,GBM
ENSG00000229847	ENSG00000107560	RAB11FIP2	CESC,GBM,KICH,KIRC,KIRP,LGG,OV,SARC,UCEC,UCS		CESC,GBM
ENSG00000229847	ENSG00000107779	BMPR1A	CESC,KICH,KIRC,KIRP,OV		CESC
ENSG00000229847	ENSG00000108799	EZH1	CESC,GBM,KICH,KIRC,KIRP		CESC,GBM
ENSG00000229847	ENSG00000142599	RERE	CESC,GBM,KICH,KIRC,KIRP,SARC		CESC
ENSG00000229847	ENSG00000144730	IL17RD	CESC,KICH,KIRC,KIRP,OV		CESC
ENSG00000229847	ENSG00000145029	NICN1	CESC,GBM,KICH,KIRC,KIRP		GBM
ENSG00000229847	ENSG00000148468	FAM171A1	CESC,GBM,KICH,KIRC,KIRP,OV,UCS		GBM
ENSG00000229847	ENSG00000151240	DIP2C	CESC,GBM,KICH,KIRC,KIRP		CESC,GBM
ENSG00000229847	ENSG00000154556	SORBS2	CESC,GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000162174	ASRGL1	CESC,GBM,KICH,KIRC,LGG		GBM
ENSG00000229847	ENSG00000163644	PPM1K	CESC,GBM,KICH,KIRC,SARC		CESC,GBM
ENSG00000229847	ENSG00000165943	MOAP1	CESC,GBM,KICH,KIRC,LGG		CESC,GBM
ENSG00000229847	ENSG00000166313	APBB1	CESC,GBM,KICH,KIRC,KIRP,LGG,SARC		CESC,GBM
ENSG00000229847	ENSG00000174684	B4GAT1	CESC,GBM,KICH,KIRC,LGG		CESC,GBM
ENSG00000229847	ENSG00000180354	MTURN	CESC,GBM,KICH,KIRC,LGG		CESC,GBM
ENSG00000229847	ENSG00000181982	CCDC149	CESC,GBM,KICH,KIRC,KIRP		CESC,GBM
ENSG00000229847	ENSG00000182013	PNMA8A	CESC,GBM,KICH,KIRP,LGG		GBM
ENSG00000229847	ENSG00000197283	SYNGAP1	CESC,GBM,KICH,KIRP,LGG		CESC,GBM
ENSG00000229847	ENSG00000205726	ITSN1	CESC,GBM,KICH,KIRP,LGG		CESC,GBM
ENSG00000229847	ENSG00000220205	VAMP2	CESC,GBM,KICH,KIRC,LGG		CESC,GBM
ENSG00000229847	ENSG00000001461	NIPAL3	GBM,KICH,KIRC,KIRP,LGG,UCS		GBM
ENSG00000229847	ENSG00000007168	PAFAH1B1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000019995	ZRANB1	GBM,KICH,KIRC,KIRP,OV,UCEC		GBM
ENSG00000229847	ENSG00000022567	SLC45A4	GBM,KICH,KIRC,LGG,UCS		GBM
ENSG00000229847	ENSG00000065675	PRKCQ	GBM,KICH,KIRC,KIRP,LGG,UCS		GBM
ENSG00000229847	ENSG00000067606	PRKCZ	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000069966	GNB5	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000078114	NEBL	GBM,KICH,KIRC,KIRP,UCS		GBM
ENSG00000229847	ENSG00000085433	WDR47	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000088367	EPB41L1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000099204	ABLIM1	GBM,KICH,KIRC,KIRP,OV		GBM
ENSG00000229847	ENSG00000107669	ATE1	GBM,KICH,KIRC,KIRP,UCEC		GBM
ENSG00000229847	ENSG00000109339	MAPK10	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000109436	TBC1D9	GBM,KIRP,LGG,UCEC,UCS		GBM
ENSG00000229847	ENSG00000109466	KLHL2	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000111897	SERINC1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000111961	SASH1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000115137	DNAJC27	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000115365	LANCL1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000115419	GLS	GBM,KICH,KIRC,LGG,UCEC		GBM
ENSG00000229847	ENSG00000115839	RAB3GAP1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000131089	ARHGEF9	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000131437	KIF3A	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000134243	SORT1	GBM,KICH,KIRC,KIRP,UCS		GBM
ENSG00000229847	ENSG00000134504	KCTD1	GBM,KIRC,KIRP,LGG,UCS		GBM
ENSG00000229847	ENSG00000135631	RAB11FIP5	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000138078	PREPL	GBM,KICH,KIRC,KIRP,LGG,OV		GBM
ENSG00000229847	ENSG00000143153	ATP1B1	GBM,KICH,KIRC,KIRP,LGG,SARC		GBM
ENSG00000229847	ENSG00000144283	PKP4	GBM,KICH,KIRC,KIRP,UCS		GBM
ENSG00000229847	ENSG00000152102	FAM168B	GBM,KICH,KIRC,KIRP,OV		GBM
ENSG00000229847	ENSG00000152484	USP12	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000155744	FAM126B	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000156050	FAM161B	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000161048	NAPEPLD	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000162409	PRKAA2	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000166326	TRIM44	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000168000	BSCL2	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000171603	CLSTN1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000180488	MIGA1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000183826	BTBD9	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000196177	ACADSB	GBM,KICH,KIRC,LGG,SARC		GBM
ENSG00000229847	ENSG00000196663	TECPR2	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000196950	SLC39A10	GBM,KICH,LGG,OV,UCEC		GBM
ENSG00000229847	ENSG00000197555	SIPA1L1	GBM,KICH,KIRC,KIRP,LGG		GBM
ENSG00000229847	ENSG00000198863	RUNDC1	GBM,KICH,KIRC,KIRP,LGG,SARC		GBM
ENSG00000229847	ENSG00000204843	DCTN1	GBM,KICH,KIRC,KIRP,LGG		GBM

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000229847	ENST00000412075	MYDGF	ENSG00000074842	ENST00000599761	-0.1291	83	GBM	-
ENSG00000229847	ENST00000412075	MYDGF	ENSG00000074842	ENST00000599630	-0.1496	688	GBM	-
ENSG00000229847	ENST00000412075	NUDT1	ENSG00000106268	ENST00000356714	-0.1833	27	GBM,CESC	-
ENSG00000229847	ENST00000412075	NUDT1	ENSG00000106268	ENST00000397046	-0.1833	27	GBM,CESC	-
ENSG00000229847	ENST00000412075	NUDT1	ENSG00000106268	ENST00000397048	-0.1833	27	GBM,CESC	-
ENSG00000229847	ENST00000412075	NUDT1	ENSG00000106268	ENST00000343985	-0.1833	27	GBM,CESC	-
ENSG00000229847	ENST00000412075	NUDT1	ENSG00000106268	ENST00000339737	-0.1833	27	GBM,CESC	-
ENSG00000229847	ENST00000412075	NUDT1	ENSG00000106268	ENST00000397049	-0.1833	27	GBM,CESC	-
ENSG00000229847	ENST00000412075	UXT	ENSG00000126756	ENST00000333119	-0.2604	113	GBM	-
ENSG00000229847	ENST00000412075	UXT	ENSG00000126756	ENST00000335890	-0.2604	113	GBM	-
ENSG00000229847	ENST00000412075	PGLS	ENSG00000130313	ENST00000252603	-0.1193	99	GBM	-
ENSG00000229847	ENST00000412075	PGLS	ENSG00000130313	ENST00000595782	-0.1193	99	GBM	-
ENSG00000229847	ENST00000412075	BANF1	ENSG00000175334	ENST00000527348	-0.1440	156	GBM	-
ENSG00000229847	ENST00000412075	RPL35A	ENSG00000182899	ENST00000448864	-0.1222	925	GBM	-
ENSG00000229847	ENST00000412075	APRT	ENSG00000198931	ENST00000378364	-0.1160	3	GBM	-
ENSG00000229847	ENST00000412075	APRT	ENSG00000198931	ENST00000567391	-0.1039	1	GBM	-
ENSG00000229847	ENST00000412075	APRT	ENSG00000198931	ENST00000563655	-0.1026	361	GBM	-
ENSG00000229847	ENST00000450314	MYDGF	ENSG00000074842	ENST00000599761	-0.1206	13	GBM	-
ENSG00000229847	ENST00000450314	MYDGF	ENSG00000074842	ENST00000599630	-0.1168	273	GBM	-
ENSG00000229847	ENST00000450314	NUDT1	ENSG00000106268	ENST00000356714	-0.1329	182	GBM,CESC	-
ENSG00000229847	ENST00000450314	NUDT1	ENSG00000106268	ENST00000397046	-0.1329	182	GBM,CESC	-
ENSG00000229847	ENST00000450314	NUDT1	ENSG00000106268	ENST00000397048	-0.1329	182	GBM,CESC	-
ENSG00000229847	ENST00000450314	NUDT1	ENSG00000106268	ENST00000343985	-0.1329	182	GBM,CESC	-
ENSG00000229847	ENST00000450314	NUDT1	ENSG00000106268	ENST00000339737	-0.1329	182	GBM,CESC	-
ENSG00000229847	ENST00000450314	NUDT1	ENSG00000106268	ENST00000397049	-0.1329	182	GBM,CESC	-
ENSG00000229847	ENST00000450314	UXT	ENSG00000126756	ENST00000333119	-0.1824	337	GBM	-
ENSG00000229847	ENST00000450314	UXT	ENSG00000126756	ENST00000335890	-0.2236	230	GBM	-
ENSG00000229847	ENST00000450314	PGLS	ENSG00000130313	ENST00000252603	-0.1932	46	GBM	-
ENSG00000229847	ENST00000450314	PGLS	ENSG00000130313	ENST00000595782	-0.1932	46	GBM	-
ENSG00000229847	ENST00000450314	BANF1	ENSG00000175334	ENST00000527348	-0.1405	129	GBM	-
ENSG00000229847	ENST00000450314	RPL35A	ENSG00000182899	ENST00000448864	-0.1209	112	GBM	-
ENSG00000229847	ENST00000450314	RPL35A	ENSG00000182899	ENST00000429437	-0.1795	1	GBM	-
ENSG00000229847	ENST00000450314	APRT	ENSG00000198931	ENST00000378364	-0.1058	190	GBM	-
ENSG00000229847	ENST00000450314	APRT	ENSG00000198931	ENST00000426324	-0.1527	3	GBM	-
ENSG00000229847	ENST00000450314	APRT	ENSG00000198931	ENST00000568319	-0.1300	1	GBM	-
ENSG00000229847	ENST00000450314	APRT	ENSG00000198931	ENST00000563655	-0.1163	70	GBM	-
ENSG00000229847	ENST00000450314	APRT	ENSG00000198931	ENST00000569616	-0.1135	1	GBM	-
ENSG00000229847	ENST00000424371	MYDGF	ENSG00000074842	ENST00000599761	-0.1499	70	GBM	-
ENSG00000229847	ENST00000424371	MYDGF	ENSG00000074842	ENST00000599630	-0.2101	154	GBM	-
ENSG00000229847	ENST00000424371	NUDT1	ENSG00000106268	ENST00000356714	-0.1256	66	GBM,CESC	-
ENSG00000229847	ENST00000424371	NUDT1	ENSG00000106268	ENST00000397046	-0.1256	66	GBM,CESC	-
ENSG00000229847	ENST00000424371	NUDT1	ENSG00000106268	ENST00000397048	-0.1256	66	GBM,CESC	-
ENSG00000229847	ENST00000424371	NUDT1	ENSG00000106268	ENST00000343985	-0.1256	66	GBM,CESC	-
ENSG00000229847	ENST00000424371	NUDT1	ENSG00000106268	ENST00000339737	-0.1256	66	GBM,CESC	-
ENSG00000229847	ENST00000424371	NUDT1	ENSG00000106268	ENST00000397049	-0.1256	66	GBM,CESC	-
ENSG00000229847	ENST00000424371	UXT	ENSG00000126756	ENST00000333119	-0.1824	301	GBM	-
ENSG00000229847	ENST00000424371	UXT	ENSG00000126756	ENST00000335890	-0.1752	310	GBM	-
ENSG00000229847	ENST00000424371	PGLS	ENSG00000130313	ENST00000252603	-0.1286	71	GBM	-
ENSG00000229847	ENST00000424371	PGLS	ENSG00000130313	ENST00000595782	-0.1286	71	GBM	-
ENSG00000229847	ENST00000424371	BANF1	ENSG00000175334	ENST00000527348	-0.1188	75	GBM	-
ENSG00000229847	ENST00000424371	RPL35A	ENSG00000182899	ENST00000448864	-0.1222	384	GBM	-
ENSG00000229847	ENST00000424371	RPL35A	ENSG00000182899	ENST00000429437	-0.1019	176	GBM	-
ENSG00000229847	ENST00000424371	APRT	ENSG00000198931	ENST00000426324	-0.1225	55	GBM	-
ENSG00000229847	ENST00000424371	APRT	ENSG00000198931	ENST00000567391	-0.1060	55	GBM	-
ENSG00000229847	ENST00000424371	APRT	ENSG00000198931	ENST00000568319	-0.1127	55	GBM	-
ENSG00000229847	ENST00000424371	APRT	ENSG00000198931	ENST00000563655	-0.1213	58	GBM	-
ENSG00000229847	ENST00000424371	APRT	ENSG00000198931	ENST00000569616	-0.1119	104	GBM	-
ENSG00000229847	ENST00000611404	MYDGF	ENSG00000074842	ENST00000599761	-0.1267	257	GBM	-
ENSG00000229847	ENST00000611404	MYDGF	ENSG00000074842	ENST00000599630	-0.1710	421	GBM	-
ENSG00000229847	ENST00000611404	NUDT1	ENSG00000106268	ENST00000356714	-0.1203	301	GBM,CESC	-
ENSG00000229847	ENST00000611404	NUDT1	ENSG00000106268	ENST00000397046	-0.1203	301	GBM,CESC	-
ENSG00000229847	ENST00000611404	NUDT1	ENSG00000106268	ENST00000397048	-0.1203	301	GBM,CESC	-
ENSG00000229847	ENST00000611404	NUDT1	ENSG00000106268	ENST00000343985	-0.1203	301	GBM,CESC	-
ENSG00000229847	ENST00000611404	NUDT1	ENSG00000106268	ENST00000339737	-0.1203	301	GBM,CESC	-
ENSG00000229847	ENST00000611404	NUDT1	ENSG00000106268	ENST00000397049	-0.1203	301	GBM,CESC	-
ENSG00000229847	ENST00000611404	UXT	ENSG00000126756	ENST00000333119	-0.1824	489	GBM	-
ENSG00000229847	ENST00000611404	UXT	ENSG00000126756	ENST00000335890	-0.1752	498	GBM	-
ENSG00000229847	ENST00000611404	PGLS	ENSG00000130313	ENST00000252603	-0.1198	76	GBM	-
ENSG00000229847	ENST00000611404	PGLS	ENSG00000130313	ENST00000595782	-0.1198	76	GBM	-
ENSG00000229847	ENST00000611404	BANF1	ENSG00000175334	ENST00000527348	-0.1370	250	GBM	-
ENSG00000229847	ENST00000611404	RPL35A	ENSG00000182899	ENST00000448864	-0.1646	378	GBM	-
ENSG00000229847	ENST00000611404	RPL35A	ENSG00000182899	ENST00000429437	-0.1748	1	GBM	-
ENSG00000229847	ENST00000611404	APRT	ENSG00000198931	ENST00000563655	-0.1026	107	GBM	-
ENSG00000229847	ENST00000611404	APRT	ENSG00000198931	ENST00000569616	-0.1110	1	GBM	-
ENSG00000229847	ENST00000440007	MYDGF	ENSG00000074842	ENST00000599761	-0.1497	1961	GBM	-
ENSG00000229847	ENST00000440007	MYDGF	ENSG00000074842	ENST00000599630	-0.1845	4460	GBM	-
ENSG00000229847	ENST00000440007	NUDT1	ENSG00000106268	ENST00000356714	-0.1673	3352	GBM,CESC	-
ENSG00000229847	ENST00000440007	NUDT1	ENSG00000106268	ENST00000397046	-0.1673	3352	GBM,CESC	-
ENSG00000229847	ENST00000440007	NUDT1	ENSG00000106268	ENST00000397048	-0.1673	3352	GBM,CESC	-
ENSG00000229847	ENST00000440007	NUDT1	ENSG00000106268	ENST00000343985	-0.1673	3352	GBM,CESC	-
ENSG00000229847	ENST00000440007	NUDT1	ENSG00000106268	ENST00000339737	-0.1673	3352	GBM,CESC	-
ENSG00000229847	ENST00000440007	NUDT1	ENSG00000106268	ENST00000397049	-0.1673	3352	GBM,CESC	-
ENSG00000229847	ENST00000440007	UXT	ENSG00000126756	ENST00000333119	-0.2994	3484	GBM	-
ENSG00000229847	ENST00000440007	UXT	ENSG00000126756	ENST00000485641	-0.1368	4345	GBM	-
ENSG00000229847	ENST00000440007	UXT	ENSG00000126756	ENST00000335890	-0.3887	5506	GBM	-
ENSG00000229847	ENST00000440007	PGLS	ENSG00000130313	ENST00000252603	-0.1457	4387	GBM	-
ENSG00000229847	ENST00000440007	PGLS	ENSG00000130313	ENST00000594761	-0.1173	857	GBM	-
ENSG00000229847	ENST00000440007	PGLS	ENSG00000130313	ENST00000595782	-0.1457	4387	GBM	-
ENSG00000229847	ENST00000440007	BANF1	ENSG00000175334	ENST00000527348	-0.1535	4020	GBM	-
ENSG00000229847	ENST00000440007	RPL35A	ENSG00000182899	ENST00000448864	-0.1614	3520	GBM	-
ENSG00000229847	ENST00000440007	APRT	ENSG00000198931	ENST00000378364	-0.1034	470	GBM	-
ENSG00000229847	ENST00000440007	APRT	ENSG00000198931	ENST00000426324	-0.1390	4628	GBM	-
ENSG00000229847	ENST00000440007	APRT	ENSG00000198931	ENST00000567391	-0.1264	394	GBM	-
ENSG00000229847	ENST00000440007	APRT	ENSG00000198931	ENST00000568319	-0.1251	4628	GBM	-
ENSG00000229847	ENST00000440007	APRT	ENSG00000198931	ENST00000563655	-0.1535	4631	GBM	-
ENSG00000229847	ENST00000440007	APRT	ENSG00000198931	ENST00000569616	-0.1197	43	GBM	-
ENSG00000229847	ENST00000551288	MYDGF	ENSG00000074842	ENST00000599761	-0.1497	2136	GBM	-
ENSG00000229847	ENST00000551288	MYDGF	ENSG00000074842	ENST00000599630	-0.2207	521	GBM	-
ENSG00000229847	ENST00000551288	NUDT1	ENSG00000106268	ENST00000356714	-0.1673	3527	GBM,CESC	-
ENSG00000229847	ENST00000551288	NUDT1	ENSG00000106268	ENST00000397046	-0.1673	3527	GBM,CESC	-
ENSG00000229847	ENST00000551288	NUDT1	ENSG00000106268	ENST00000397048	-0.1673	3527	GBM,CESC	-
ENSG00000229847	ENST00000551288	NUDT1	ENSG00000106268	ENST00000343985	-0.1673	3527	GBM,CESC	-
ENSG00000229847	ENST00000551288	NUDT1	ENSG00000106268	ENST00000339737	-0.1673	3527	GBM,CESC	-
ENSG00000229847	ENST00000551288	NUDT1	ENSG00000106268	ENST00000397049	-0.1673	3527	GBM,CESC	-
ENSG00000229847	ENST00000551288	UXT	ENSG00000126756	ENST00000333119	-0.2994	3659	GBM	-
ENSG00000229847	ENST00000551288	UXT	ENSG00000126756	ENST00000485641	-0.1011	345	GBM	-
ENSG00000229847	ENST00000551288	UXT	ENSG00000126756	ENST00000335890	-0.3646	405	GBM	-
ENSG00000229847	ENST00000551288	PGLS	ENSG00000130313	ENST00000252603	-0.1457	4562	GBM	-
ENSG00000229847	ENST00000551288	PGLS	ENSG00000130313	ENST00000594761	-0.1173	1032	GBM	-
ENSG00000229847	ENST00000551288	PGLS	ENSG00000130313	ENST00000595782	-0.1457	4562	GBM	-
ENSG00000229847	ENST00000551288	BANF1	ENSG00000175334	ENST00000527348	-0.1570	440	GBM	-
ENSG00000229847	ENST00000551288	RPL35A	ENSG00000182899	ENST00000448864	-0.1614	3695	GBM	-
ENSG00000229847	ENST00000551288	APRT	ENSG00000198931	ENST00000378364	-0.1034	645	GBM	-
ENSG00000229847	ENST00000551288	APRT	ENSG00000198931	ENST00000426324	-0.1390	4803	GBM	-
ENSG00000229847	ENST00000551288	APRT	ENSG00000198931	ENST00000567391	-0.1230	569	GBM	-
ENSG00000229847	ENST00000551288	APRT	ENSG00000198931	ENST00000568319	-0.1251	4803	GBM	-
ENSG00000229847	ENST00000551288	APRT	ENSG00000198931	ENST00000563655	-0.1535	4806	GBM	-
ENSG00000229847	ENST00000551288	APRT	ENSG00000198931	ENST00000569616	-0.1437	618	GBM	-
ENSG00000229847	ENST00000423419	MYDGF	ENSG00000074842	ENST00000599761	-0.1160	155	GBM	-
ENSG00000229847	ENST00000423419	MYDGF	ENSG00000074842	ENST00000262947	-0.1097	77	GBM	-
ENSG00000229847	ENST00000423419	MYDGF	ENSG00000074842	ENST00000599630	-0.1946	215	GBM	-
ENSG00000229847	ENST00000423419	NUDT1	ENSG00000106268	ENST00000356714	-0.1502	170	GBM,CESC	-
ENSG00000229847	ENST00000423419	NUDT1	ENSG00000106268	ENST00000397046	-0.1502	170	GBM,CESC	-
ENSG00000229847	ENST00000423419	NUDT1	ENSG00000106268	ENST00000397048	-0.1502	170	GBM,CESC	-
ENSG00000229847	ENST00000423419	NUDT1	ENSG00000106268	ENST00000343985	-0.1502	170	GBM,CESC	-
ENSG00000229847	ENST00000423419	NUDT1	ENSG00000106268	ENST00000339737	-0.1502	170	GBM,CESC	-
ENSG00000229847	ENST00000423419	NUDT1	ENSG00000106268	ENST00000397049	-0.1502	170	GBM,CESC	-
ENSG00000229847	ENST00000423419	UXT	ENSG00000126756	ENST00000333119	-0.2236	120	GBM	-
ENSG00000229847	ENST00000423419	UXT	ENSG00000126756	ENST00000335890	-0.2236	127	GBM	-
ENSG00000229847	ENST00000423419	PGLS	ENSG00000130313	ENST00000252603	-0.1116	93	GBM	-
ENSG00000229847	ENST00000423419	PGLS	ENSG00000130313	ENST00000595782	-0.1116	93	GBM	-
ENSG00000229847	ENST00000423419	BANF1	ENSG00000175334	ENST00000527348	-0.1774	26	GBM	-
ENSG00000229847	ENST00000423419	APRT	ENSG00000198931	ENST00000378364	-0.1426	191	GBM	-
ENSG00000229847	ENST00000423419	APRT	ENSG00000198931	ENST00000426324	-0.1471	271	GBM	-
ENSG00000229847	ENST00000423419	APRT	ENSG00000198931	ENST00000567391	-0.1187	115	GBM	-
ENSG00000229847	ENST00000423419	APRT	ENSG00000198931	ENST00000568319	-0.1081	156	GBM	-
ENSG00000229847	ENST00000423419	APRT	ENSG00000198931	ENST00000563655	-0.1318	274	GBM	-
ENSG00000229847	ENST00000423419	APRT	ENSG00000198931	ENST00000569616	-0.1437	164	GBM	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000229847.7	ENST00000412075.5	95	7	294
ENSG00000229847.7	ENST00000450314.5	140	1002	580
ENSG00000229847.7	ENST00000424371.2	101	195	500
ENSG00000229847.7	ENST00000611404.1	109	135	461
ENSG00000229847.7	ENST00000440007.4	106	512	192
ENSG00000229847.7	ENST00000551288.4	171	5483	4968
ENSG00000229847.7	ENST00000423419.1	171	5658	5143

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential