 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | FKBP8,ARHGEF1,TSPYL2,GSDMB,ARL16,VAMP1,EPOR,SLIRP,TCEA2,ZSWIM9,MFSD8,KRT10,MCRS1,ABHD17A,TMEM234,CIRBP,PET100,MZF1,SART1,WDR83OS,SIRT3,MAPK8IP3,LYSMD4,SRP19,PPP2R3B,N4BP2L2,BCS1L,DMTF1,CTU1,ACD,DPP7,XAB2,LMBR1L,B3GAT3,GPCPD1,TRAPPC12,NDUFA11,ULK3,PRKAR1B,CENATAC,NPEPL1,WDR5B,SNRPA,SAFB2,KCTD13,APTX,MSANTD2,TUBGCP6,TRAPPC2L,CCDC14,FAM200A,LIMS2,CHKA,FAAP20,CLK4,C6orf136,COA3,SURF2,ZBED5,EIF2B5,NDUFA3,TTC14,CDK2AP2,SLC2A11,COG4,GATD1,GKAP1,SPRN,SUGP1,TAZ,SPG7,NAA80,SIGIRR,FAM104B,C19orf44,USE1,PPIP5K1,CLCN6,ECHDC2,OGT,RCCD1,IGIP,TMEM208,RAB4B,COX19,MYEF2,BRSK1,UQCC2,TARBP2,ILKAP,POLG2,RING1,SLC22A17,PSENEN,SSU72,CHKB,BBIP1,CBY1,ABHD14B,WDR83,OSGEP,USF1,CTC1,CLK1,GABPB1,RABL2A,ANKRD39,RPAIN,WASHC3,OFD1,MPST,BABAM1,CARS2,ACYP1,SLC25A29,PIH1D1,IFT172,CFAP298,DERL2,B3GALT6,DDX49,PFDN6,INO80E,RBM42,NPIPA5,C3orf62,YJU2,CBX7,SETD5,RPL35,BORCS6,ORMDL1,MIIP,LPAR2,PARL,C18orf21,FDX2,C22orf39,C12orf73,DDX51,AGER,ESS2,PIGZ,SPOUT1,C1orf52,CUL9,CDK11A,MTLN,FBXW4,TSEN54,LRRC37B,ATG4B,MRPL57,PAFAH1B3,CCDC191,NXF1,DCUN1D2,PAN2,FAM229A,SGTA,GIGYF1,HMGN3,ZNF14,FAM193B,NDUFB1,PNKP,ABCA7,SLC25A28,STK25,ARFGAP2,SEC31B,CZIB,RABL6,CIR1,KLHL17,ARHGAP33,HDDC2,DMAC2L,N4BP2L1,ELOF1,DNASE1,HEXD,IFT122,SDHAF2,HDAC8,GAS8,VCPKMT,SCNN1D,CCDC24,MRPS25,CCDC12,ZNF69,CCDC154,ERCC5,PHYHD1,IQCC,TRIR,ZNF30,MRPL52,FAAP100,SCNM1,RTRAF,FANCL,GLI4,OVGP1,DNAJC4,MRPL55,LENG8,MED7,NDUFB8,SH2B1,RANBP3,STK11,SNRNP25,PPP1R12C,C1orf159,PRR3,FAM98C,NICN1,UBE2G2,IP6K2,PPOX,WDR53,PPWD1,MLLT6,AHI1,ZNF70,INO80C,INO80D,BIVM,C20orf96,HSCB,ARFGAP1,MIX23,CAPN10,AP1G2,ACYP2,ANKMY1,WDR59,SURF1,TMEM175,GNPTG,NUTF2,GPN2,TNK2,INTS11,GDPD3,SLC25A42,ZNF44,MAN1B1,TRIM13,NPDC1,PKD1,RIMKLB,LTO1,PIDD1,NME4,ANKRD24,CWC15,CCDC106,IFT80,NAA10,FBXO44,EXD3,PPP2R5B,NFKBID,LRIG2,P4HTM,PATZ1,PCED1A,ABTB1,TUSC2,MVB12A,ELP5,TBCB,SYCE1L,TARS3,DYNLT2,MRPS15,LMF1,BRF1,ACIN1,ZC3H8,PPP1R3F,ENOSF1,MAU2,THOC6,UBOX5,ANKRD49,PAXBP1,DNAJC19,LEMD2,LENG1,GALT,FNBP4,DENND6B,ATF4,CCHCR1,PRMT7,ZFYVE19,INPP5E,PHF11,RSRP1,IFI27L2,IL11RA,SGF29,NEK8,CHD2,SF3A2,MBD3,USP40,ATG14,CLEC2D,FOXP1,ZSWIM1,BCL7B,FIZ1,TRPT1,TATDN2,LTB4R,KIFC2,PSPN,VPS4A,MRPS9,SERP2,HEMK1,LINS1,RABEP2,IFT20,OGFR,ALKBH4,NCKAP5L,CDC37,PYURF,FRS3,NDUFAF5,RBM6,TRMT13,KRTCAP2,ZNF862,TTBK2,IDUA,TMEM134,SREK1IP1,POP5,BTBD6,ORAI3,MYL5,UBXN6,NLRP1,UBAC1,EPM2AIP1,UCKL1,UBE2L3,SCAND1,PSME3IP1,NAP1L4,WDR27,DHRS1,HSPBP1,UBXN11,EME2,PTCD1,PPCDC,DCAF15,CROCC,PLXNB1,CERS5,RSAD1,EP400P1,USF2,PPP1R26,NCAPH2,HPS4,PNISR,GEN1,RP9,SFPQ,AMT,TRIOBP,ACAP3,LRRC27,CASTOR1,AMH,CARD8,SPAG7,MVD,ENKD1,FAM3A,ASCC2,ATP5IF1,ZNF10,PSME2,NISCH,BLOC1S1,ATAT1,IFFO1,MORN2,PYM1,ZBTB8OS,TRMU,CTBP1,BICRA,POMT1,ATXN7L2,ARF5,CHTF18,CDPF1,ODAD4,UBE2J2,NAT14,KATNBL1,C1orf35,CEP95,CCDC174,MTIF3,CDK5RAP1,MARCHF9,TBRG1,SLX4IP,ZCWPW1,NPRL2,KLHDC4,KLHDC1,CCNL2,DCAKD,DMPK,CLK3,RNPC3,TOM1L2,C14orf28,ANKRD10,HDAC11,INCA1,VPS9D1,GFER,GABBR1,ZDHHC8,KANSL3,RFNG,DDTL,SGSM3,MC1R,COQ4,COPS9,CCNT2,OSBPL7,DHRS12,STX10,KAT2A,ECI1,ARMC5,UBALD1,ACBD4,SNU13,LRRC23,RBPMS,TMEM223,BORCS7,RBM26,PLA2G6,TMEM86B,ZBTB3,RBM25,ENTR1,PPP1R7,FBXW7,CEBPZOS,RHPN1,ENDOV,BLCAP,PPIE,CLDN15,FAM50A,MAP2K2,POLI,ELP6,EFNA3,PRPF39,ZNF34,ERMARD,KIAA0753,GEMIN6,MIB2,EGFL7,MZT2B,PHF1,HIRA,HDAC10,DEAF1,HEXIM2,CHADL,SCRN2,HSF4,ARGLU1,ANKS3,NOXA1,YJEFN3,UCK1,SMDT1,CCNL1,RGL3,ANKRD54,SGSM2,VMAC,KRI1,RNF25,COX4I1,MROH8,TMEM60,ZFYVE21,HSPBAP1,CRYGS,YAE1,ACTR1B,DYRK4,EGFL8,NR2C2AP,MZT2A,PSMG4,TIA1,HOOK2,ZNF83,RETREG3,ARFRP1,NSUN6,CIAO2B,MOCS2,ABCD4,PELP1,PSMG3,MRPL27,SAYSD1,C19orf25,SZT2,ARPC4,MYG1,ADAMTS13,DDX5,DTX3,KPTN,ZMYND19,MTG2,RNF215,TLE5,MAPK11,NAT9,LIPT1,ABHD14A,CRAMP1,LUC7L,TRMT61A,COA5,MICOS10,MAP2K7,C14orf93,LRSAM1,DPH7,POU6F1,TRA2A,ATP5F1D,SMARCD3,MRPL43,CEP131,DUS1L,NEURL4,PNPLA7,HINFP,XPA,NR2C1,APBB3,AMY2B,CRELD1,NRIP2,CNTROB,NOP53,HEBP2,WBP1,RBM33,FKBP2,IMMP1L,SRRT,AGAP6,TPRA1,RBM39,SLC26A6,SLC25A27,MRPS26,PGS1,PCSK1N,IMP3,SERGEF,NDUFA13,NRF1,TMEM44,RRNAD1,GADD45GIP1,KAT8,TRIM39,ZSWIM7,HRAS,PIGL,KCTD6,RP11-523H20.5,CSAD,REEP2,AGAP3,KIAA0895L,ATAD3B,SAMD10,MUTYH,BCL7C,DCAF8,PHYKPL,TMEM259,CACTIN,FRA10AC1,PEDS1,LIN37,OGA,ZFP69,IFT27,RECQL5,PAN3,ZNHIT1,PHKG2,NARF,SARS2,ZC3HC1,NIPSNAP3B,ASB6,POLR2J,LRRC75B,SS18L2,SWSAP1,TBC1D17,SUPT7L,NT5C3B,POLR2I,UBE2D4,CENPT,PACS2,ZGLP1,S100PBP,TRIM3,SHC2,CFAP410,DTNB,POGZ,ANAPC7,CTSF,C1orf50,RBM4B,DNAJB2,EXOG,MRPS31,ANAPC2,BEND5,TAF1C,PRRT1,MAP3K12,ATP5MJ,SAMD1,TRAPPC14,SLC38A6,UBL5,RPS8,RPS11,CXXC1,SYNE4,MRNIP,MPV17,SS18L1,ELMOD3,DDX17,GSTM2,ING4,SENP7,MTRF1,RAD52,REC8,CEP43,UBXN1,ARVCF,CLN6,THYN1,MARF1,PRAF2,SDR39U1,PGGHG,TELO2,IFT46,CDAN1,FBXL6,WSB1,TEDC1,PCYOX1L,LRRC29,C12orf76,POLL,FAM228B,WASHC1,USP21,CHCHD10,TIGD1,KLC1,GPS2,TRIM52,NDUFC1,RPL36A,COA8,NCBP3,PCBP4,THAP3,NOL12,MTFR1L,CRYZL1,MOSPD3,PCP2,CLASRP,MBD6,CWC25,STK36,TTC32,MICAL1,MOB2,ZMAT1,GOLGA8B,SPATA33,RPS24,SMG9,CBR4,ZNF18,TMA7,GOLGA8A,ITGAE,EMC9,CYP2R1,PAM16,YBEY,SETD4,SPIRE2,TPRKB,CARD19,KLHDC3,NEDD8,AARSD1,GMEB2,DUSP28,CLIP3,RBM5,RPS19BP1,SMIM4,NKTR,YPEL3,ZFP28,TTLL3,ZNF84,RXRB,PARP6,RHBDD3,GDPGP1,TUBD1,C19orf18,NDUFV3,NMRK1,DGCR6L,REX1BD,PIAS2,LRP5L,TFPT,TSC1,SH3GLB2,FASTK,CYHR1,SIRT6,MAN2C1,DXO,USPL1,USP20,ANKRD13D,CCDC57,TRAPPC2,SIRT7,MRFAP1L1,TMEM178A | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | PRPF38B,ANKRD39,POU6F1,ARPC4,YDJC,CNPY3,KRTCAP2,GTF2H4,ATAT1,KIZ,ECHDC2,ZMAT1,PGS1,PGPEP1,DMPK,DGCR8,IFT80,EFHC1,ZNF70,OXLD1,PDDC1,LPAR2,CFAP36,UBXN1,STX16,VARS2,TNFSF12,TADA3,HEMK1,ZMIZ2,DDX17,EP400NL,REC8,MRPS31,RBM5,FKBP8,NCBP3,C19orf44,DYRK4,C9orf114,ZNF14,GPCPD1,RGL3,PDE8A,LRRC27,ZNF83,CWC25,USF1,BEND5,CRYZL1,TATDN2,ALKBH4,USF2,NDUFB1,ENOSF1,ZC3H6,FRA10AC1,TCEAL2,MIIP,C14orf79,VMAC,MZF1,C6orf203,C3orf62,ANKRD54,FAM160B2,ZSWIM1,SLC25A14,TMEM88,RPSA,TMEM120B,PTDSS2,PCSK1N,TMEM44,C14orf2,HSCB,ZNF69,ARHGEF1,MARCH9,MAU2,CRTC1,SETD4,RBM42,PPCDC,NT5M,ACCS,INO80C,MAVS,C19orf18,NT5C,SAT2,FNBP4,GGA1,WSB1,CCDC130,SERGEF,ECI1,CWC15,SCNM1,ATPIF1,ARRDC2,RPL35,MFSD8,SUGP1,NR2C2AP,PTCD1,CCNL1,DHRS1,S100PBP,DIP2A,POMT1,BABAM1,AARSD1,SENP5,DERL2,RBM6,ZMYND19,LHPP,FAM167B,AP4B1,MDM4,CIRBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | TMOD3,CDK4,NUP98,ACLY,PIK3CB,RPAP3,ITCH,MAPRE1,STK3,CDK12,EPRS,NCK1,IARS,RNF19B,USP32,ERAP1,ATF1,DIEXF,SEC24D,ITPRIPL2,KPNA6,SLC30A7,STAU1,MTM1,ACBD3,CCT5,GPN3,SDHB,LAP3,CANX,CSNK1A1,MFAP3,TRAPPC10,PRDX3,FNDC3B,WNK1,LZIC,TM7SF3,GSPT1,SNX19,NRAS,PRMT5,NUP155,NDUFS1,CSDE1,CLPX,SRP72,TXNRD1,CDC27,GNA13 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ADAM17,PARP1,CNOT1,TRAP1,VPS26C,PSMD2,DLST,HEATR1,GNPNAT1,UHRF1BP1L,MYH9,SNX12,BECN1,RDX,NUP155,KPNA6,RNF40,SMCR8,DAG1,NOP14,RELL1,GNL3L,EDC4,CEP104,GBA,TSR1,TPM3,MID2,KIAA0100,PLEKHB2,EIF4G1,BZW1,BPNT1,SPTY2D1,MAT2B,DPP3,GPN1,ATP6V0C,MSH3,PCBP1,DDX46,PSMC1,SRP72,C1orf43,DNAJC11,CAP1,CLTC,ITPRIPL2,COA7,FLII,L2HGDH,SEC24A,ATP2A2,MRPL19,GCLM,VGLL4,MBTPS2,CSDE1,SNX19,ECT2,HSPA8,M6PR,APAF1,GPATCH4,MR1,CDK4,PGK1,SSR3,TMEM33,SEC24D,UBE2D3,COPA,ZW10,IQGAP1,YIPF5,RAB29,NOCT,TAGLN2,IREB2,G3BP1,CDC27,DYNC1I2,GTF2H3,CLIP1,STAT3,RAD50,CLPB,SDCBP,CORO1C,GANAB,SEC23A,SOAT1,PRMT5,STK24,LYPLA1,NCOA2,MKLN1,ATP5PB,DDX3X,CLCC1,TXNRD1,IPO5,MTMR12,PSME3,RAB35,ALAS1,SMAD1,POLR2B,COPB2,CLPX,MRPL37,RAB11FIP1,AGFG1,RAB5C,GNS,PRPS1,TM7SF3,BRCC3,SPPL2A,USP9X,TANGO6,MTDH,KBTBD4,CAND1,RTCA,IDE,STT3A,WNK1,GALK2,ATP5F1B,ARF3,SF3A1,TMED1,BTBD1,SPRING1,TMLHE,SLC31A1,ADNP2,GLMP,GSR,NUP98,ACTR2,RPN2,VAMP7,PIGN,TRIP12,IFNAR1,MTHFD1,TFIP11,TNPO1,FASTKD2,SEC23B,LAMP2,KIF2A,GTF2I,MED1,EIF3L,TGOLN2,HBP1,EIF4G2,NEK7,CSNK1A1,SPTLC1,CS,TMOD3,PCYT1A,SMG8,PLIN3,AKIRIN1,ACADM,CTNNA1,CAPZA2,YME1L1,UGGT1,RPE,HAT1,HCCS,UTP25,NRAS,CHM,ITFG1,WDR3,ITCH,USP14,MAGT1,ATF1,TMBIM6,FNDC3B,HAUS2,CCNK,MCFD2,SDAD1,NOMO2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000229122 | ENST00000411862 | exon_skip_386313 | chr3:108051938-108051970 | -5.80 | -0.2900 | CD47 | ENST00000361309 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000229122 | ENST00000411862 | exon_skip_111863 | chr14:23565815-23565892 | -10.98 | -0.1689 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_4796 | chr1:41007448-41007545 | -9.16 | -0.1041 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_41813 | chr10:68337857-68337996 | -18.12 | -0.2665 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_52701 | chr10:97468965-97469104 | -13.82 | -0.1161 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_74009 | chr11:64773429-64773505 | -10.51 | -0.2444 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_87733 | chr12:120571190-120571291 | -10.10 | -0.1906 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_131398 | chr15:101286213-101286293 | -5.32 | -0.1004 | SNRPA1 | ENST00000254193 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_287763 | chr17:28884224-28884315 | -9.21 | -0.1561 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_290158 | chr17:42953723-42953778 | -5.63 | -0.1224 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_300663 | chr19:1425877-1425960 | -10.05 | -0.2871 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_313557 | chr19:5786748-5786845 | -13.97 | -0.1663 | DUS3L | ENST00000309061 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_319223 | chr19:43526200-43526349 | -16.84 | -0.1161 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_324294 | chr2:27774423-27774530 | -8.97 | -0.1759 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_370518 | chr22:50247691-50247776 | -15.63 | -0.2368 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_380242 | chr3:186784961-186785101 | -10.13 | -0.1151 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_382458 | chr3:38131595-38131638 | -4.47 | -0.1719 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_387016 | chr3:121788283-121788432 | -9.85 | -0.1263 | IQCB1 | ENST00000310864 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_436035 | chr5:79656957-79657001 | -4.92 | -0.1118 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_442657 | chr5:74730259-74730398 | -12.32 | -0.1151 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_462144 | chr6:125298713-125298816 | -9.93 | -0.1241 | HDDC2 | ENST00000398153 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_470226 | chr7:103307595-103307708 | -10.51 | -0.1168 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000229122 | ENST00000411862 | exon_skip_67639 | chr11:773521-773629 | -12.69 | -0.1459 | GATD1 | ENST00000319863 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000229122 | ENSG00000100483 | VCPKMT | ACC,CHOL,GBM,KIRP,LGG,LUAD,TGCT,THCA,UCEC,UCS,UVM | | GBM | | ENSG00000229122 | ENSG00000137218 | FRS3 | ACC,GBM,LGG,PAAD,TGCT,THCA,THYM,UVM | | GBM | | ENSG00000229122 | ENSG00000160469 | BRSK1 | ACC,GBM,KIRP,PAAD,PCPG,TGCT | | GBM | | ENSG00000229122 | ENSG00000175662 | TOM1L2 | ACC,GBM,PAAD,SARC,TGCT | | GBM | | ENSG00000229122 | ENSG00000183060 | LYSMD4 | ACC,GBM,KIRP,LUAD,UVM | | GBM | | ENSG00000229122 | ENSG00000184402 | SS18L1 | ACC,GBM,LUAD,PAAD,TGCT,UCS | | GBM | | ENSG00000229122 | ENSG00000250067 | YJEFN3 | ACC,BLCA,CHOL,DLBC,GBM,KIRP,LAML,LGG,PAAD,PCPG,PRAD,TGCT,THYM,UCEC | | GBM | | ENSG00000229122 | ENSG00000008710 | PKD1 | BLCA,GBM,KIRP,PAAD,SARC | | GBM | | ENSG00000229122 | ENSG00000010322 | NISCH | BLCA,CESC,CHOL,DLBC,GBM,KIRP,LUAD,PAAD | | GBM | | ENSG00000229122 | ENSG00000011021 | CLCN6 | BLCA,CHOL,GBM,LUAD,PAAD,UVM | | GBM | | ENSG00000229122 | ENSG00000105270 | CLIP3 | BLCA,CHOL,GBM,PAAD,PCPG,SARC,TGCT | | GBM | | ENSG00000229122 | ENSG00000125503 | PPP1R12C | BLCA,CHOL,DLBC,GBM,KIRP,LGG,PAAD,TGCT,THCA | | GBM | | ENSG00000229122 | ENSG00000126214 | KLC1 | BLCA,CHOL,DLBC,GBM,KIRP,LGG,LUAD,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS,UVM | | GBM | | ENSG00000229122 | ENSG00000133460 | SLC2A11 | BLCA,CHOL,DLBC,GBM,KIRP,LGG,LUAD,PAAD,SARC,TGCT,UCEC | | GBM | | ENSG00000229122 | ENSG00000136878 | USP20 | BLCA,CHOL,GBM,KIRP,LGG,PAAD,SARC,TGCT,THCA,THYM,UCS,UVM | | GBM | | ENSG00000229122 | ENSG00000138834 | MAPK8IP3 | BLCA,CHOL,DLBC,GBM,KIRP,LUAD,PAAD,THCA,UVM | | GBM | | ENSG00000229122 | ENSG00000148356 | LRSAM1 | BLCA,CHOL,DLBC,GBM,KIRP,LGG,PAAD,SARC,TGCT,THCA | | GBM | | ENSG00000229122 | ENSG00000148690 | FRA10AC1 | BLCA,CHOL,DLBC,GBM,KIRP,LGG,PAAD,TGCT,THCA,THYM,UCEC,UVM | | GBM | | ENSG00000229122 | ENSG00000165699 | TSC1 | BLCA,GBM,PAAD,UCEC,UVM | | GBM | | ENSG00000229122 | ENSG00000182700 | IGIP | BLCA,CESC,GBM,KIRP,PAAD,TGCT,UCEC,UVM | | GBM | | ENSG00000229122 | ENSG00000184205 | TSPYL2 | BLCA,CESC,GBM,KIRP,PAAD,SARC,THCA | | GBM | | ENSG00000229122 | ENSG00000203772 | SPRN | BLCA,CHOL,DLBC,GBM,KIRP,PAAD,TGCT,THCA,UCEC | | GBM | | ENSG00000229122 | ENSG00000204314 | PRRT1 | BLCA,GBM,KIRP,THYM,UCEC | | GBM | | ENSG00000229122 | ENSG00000205593 | DENND6B | BLCA,CHOL,GBM,KIRP,LGG,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCS | | GBM | | ENSG00000229122 | ENSG00000145029 | NICN1 | CESC,CHOL,DLBC,GBM,KIRP,LUAD,PAAD,SARC,THCA | | GBM | | ENSG00000229122 | ENSG00000181035 | SLC25A42 | CESC,DLBC,GBM,LGG,PAAD,THCA | | GBM | | ENSG00000229122 | ENSG00000204681 | GABBR1 | CESC,GBM,KIRP,PAAD,SARC,THCA,UVM | | GBM | | ENSG00000229122 | ENSG00000061938 | TNK2 | CHOL,GBM,LGG,THCA,THYM,UVM | | GBM | | ENSG00000229122 | ENSG00000068971 | PPP2R5B | CHOL,GBM,KIRP,PAAD,THCA | | GBM | | ENSG00000229122 | ENSG00000100359 | SGSM3 | CHOL,DLBC,GBM,KIRP,LGG | | GBM | | ENSG00000229122 | ENSG00000107829 | FBXW4 | CHOL,DLBC,GBM,KIRP,LGG,PAAD,THCA,THYM,UCS | | GBM | | ENSG00000229122 | ENSG00000109670 | FBXW7 | CHOL,GBM,KIRP,LUAD,PAAD,TGCT,UCEC,UVM | | GBM | | ENSG00000229122 | ENSG00000133612 | AGAP3 | CHOL,GBM,KIRP,LGG,PAAD,THCA | | GBM | | ENSG00000229122 | ENSG00000139190 | VAMP1 | CHOL,DLBC,GBM,KIRP,LUAD,SARC,THCA | | GBM | | ENSG00000229122 | ENSG00000148341 | SH3GLB2 | CHOL,DLBC,GBM,KIRP,LGG,PAAD,SARC,THCA,UCS | | GBM | | ENSG00000229122 | ENSG00000166619 | BLCAP | CHOL,DLBC,GBM,KIRP,THCA | | GBM | | ENSG00000229122 | ENSG00000166783 | MARF1 | CHOL,GBM,LUAD,SARC,UVM | | GBM | | ENSG00000229122 | ENSG00000167508 | MVD | CHOL,GBM,KIRP,LGG,THCA,UCS | | GBM | | ENSG00000229122 | ENSG00000168781 | PPIP5K1 | CHOL,GBM,KIRP,PAAD,SARC,TGCT,UCS,UVM | | GBM | | ENSG00000229122 | ENSG00000179364 | PACS2 | CHOL,DLBC,GBM,KIRP,PAAD,PCPG,THYM | | GBM | | ENSG00000229122 | ENSG00000184271 | POU6F1 | CHOL,GBM,KIRP,LUAD,PAAD,PCPG,TGCT,THCA,UCEC,UVM | | GBM | | ENSG00000229122 | ENSG00000185453 | ZSWIM9 | CHOL,GBM,LGG,PAAD,PCPG,THCA | | GBM | | ENSG00000229122 | ENSG00000198408 | OGA | CHOL,GBM,KIRP,UCEC,UVM | | GBM | | ENSG00000229122 | ENSG00000215041 | NEURL4 | CHOL,GBM,KIRP,LGG,PAAD | | GBM | | ENSG00000229122 | ENSG00000275023 | MLLT6 | CHOL,GBM,KIRP,PAAD,SARC,TGCT,UVM | | GBM | | ENSG00000229122 | ENSG00000130653 | PNPLA7 | DLBC,GBM,KIRP,LGG,PAAD,UVM | | GBM | | ENSG00000229122 | ENSG00000132563 | REEP2 | DLBC,GBM,LGG,PAAD,SARC | | GBM | | ENSG00000229122 | ENSG00000153443 | UBALD1 | DLBC,GBM,LGG,PAAD,PCPG,PRAD,THCA,UCS | | GBM | | ENSG00000229122 | ENSG00000204564 | C6orf136 | DLBC,GBM,KIRP,LGG,PAAD,THCA,THYM | | GBM | | ENSG00000229122 | ENSG00000089847 | ANKRD24 | GBM,LGG,PRAD,TGCT,THYM | | GBM | | ENSG00000229122 | ENSG00000110171 | TRIM3 | GBM,KIRP,PAAD,SARC,THCA | | GBM | | ENSG00000229122 | ENSG00000119227 | PIGZ | GBM,LGG,PAAD,PRAD,UVM | | GBM | | ENSG00000229122 | ENSG00000128881 | TTBK2 | GBM,KIRP,LUAD,PCPG,TGCT | | GBM | | ENSG00000229122 | ENSG00000135541 | AHI1 | GBM,KIRP,PAAD,TGCT,UCEC,UVM | | GBM | | ENSG00000229122 | ENSG00000167702 | KIFC2 | GBM,KIRP,PAAD,TGCT,THCA | | GBM | | ENSG00000229122 | ENSG00000185386 | MAPK11 | GBM,LGG,PAAD,PCPG,THCA,THYM | | GBM | | ENSG00000229122 | ENSG00000196422 | PPP1R26 | GBM,KIRP,PAAD,SARC,UCS,UVM | | GBM | | ENSG00000229122 | ENSG00000197776 | KLHDC1 | GBM,KIRP,LAML,LGG,LUAD,PAAD | | GBM | | ENSG00000229122 | ENSG00000204991 | SPIRE2 | GBM,KIRP,LGG,PCPG,UCS,UVM | | GBM |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000229122 | ENST00000411862 | TAGLN2 | ENSG00000158710 | ENST00000320307 | -0.8550 | 225 | GBM | - | | ENSG00000229122 | ENST00000411862 | GPN1 | ENSG00000198522 | ENST00000515877 | -0.1012 | 66 | GBM | - | | ENSG00000229122 | ENST00000411862 | GPN1 | ENSG00000198522 | ENST00000503738 | -0.3425 | 15 | GBM | - | | ENSG00000229122 | ENST00000411862 | TMED1 | ENSG00000099203 | ENST00000591695 | -0.1439 | 69 | GBM | - | | ENSG00000229122 | ENST00000411862 | TMED1 | ENSG00000099203 | ENST00000588289 | -1.4900 | 154 | GBM | - | | ENSG00000229122 | ENST00000411862 | SSR3 | ENSG00000114850 | ENST00000265044 | -0.1385 | 1 | GBM | - | | ENSG00000229122 | ENST00000411862 | SSR3 | ENSG00000114850 | ENST00000463503 | -0.2422 | 20 | GBM | - | | ENSG00000229122 | ENST00000411862 | SSR3 | ENSG00000114850 | ENST00000496050 | -0.3850 | 70 | GBM | - | | ENSG00000229122 | ENST00000411862 | MAGT1 | ENSG00000102158 | ENST00000358075 | -0.2593 | 1 | GBM | - | | ENSG00000229122 | ENST00000411862 | MAGT1 | ENSG00000102158 | ENST00000610432 | -0.2593 | 1 | GBM | - | | ENSG00000229122 | ENST00000411862 | MAGT1 | ENSG00000102158 | ENST00000618282 | -0.2593 | 1 | GBM | - | | ENSG00000229122 | ENST00000411862 | LYPLA1 | ENSG00000120992 | ENST00000522007 | -0.7657 | 19 | GBM | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000229122.1 | ENST00000411862.1 | 48 | 426 | 280 |
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