 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | | ENSG00000228630 | HOTAIR | rs11170775:54365605:G:A | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs4759313:54359074:T:A | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs10783618:54365275:A:G:- | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs10783616:54359220:C:G | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs10783617:54359387:G:T | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs920778:54360232:G:A | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs17840857:54357757:A:C:- | 2 | PRAD,KIRC | 0 | | | ENSG00000228630 | HOTAIR | rs71227278:54358047:C:CTTAA | 2 | PRAD,KIRC | 0 | | | ENSG00000228630 | HOTAIR | rs4512901:54365236:G:T:- | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs4511324:54365535:A:G | 2 | PRAD,KIRC | 0 | | | ENSG00000228630 | HOTAIR | rs17105613:54362194:C:T:+ | 0 | | 2 | PRAD,KIRC | | ENSG00000228630 | HOTAIR | rs1838169:54357495:C:G | 1 | KIRC | 0 | | | ENSG00000228630 | HOTAIR | rs35951424:54357996:TA:T | 1 | KIRC | 0 | | | ENSG00000228630 | HOTAIR | rs12422555:54376264:A:T:+ | 1 | KIRC | 0 | |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000228630.4 | ENST00000424518.4 | 105 | 32 | 349 | | ENSG00000228630.4 | ENST00000455246.4 | 111 | 821 | 1156 | | ENSG00000228630.4 | ENST00000425595.4 | 100 | 569 | 871 | | ENSG00000228630.4 | ENST00000453875.4 | 98 | 276 | 569 | | ENSG00000228630.4 | ENST00000439545.1 | 72 | 293 | 75 |
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