 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ARPC2,RNH1,ATP5F1B,ECI2,MRPL37,TUBB6,PSMD2,RAN,CORO1C,SLC25A3,TUBA1C,HSPA8 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
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| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000227719 | ENST00000449931 | exon_skip_44998 | chr10:110132304-110132400 | -10.58 | -0.1924 | ADD3 | ENST00000356080 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_461111 | chr6:90544551-90544632 | -10.09 | -0.1506 | MAP3K7 | ENST00000369329 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_7578 | chr1:81986900-81987029 | -17.60 | -0.1645 | ADGRL2 | ENST00000370717,ENST00000370728 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_60345 | chr11:63903985-63904147 | -19.15 | -0.1244 | MARK2 | ENST00000402010 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_67074 | chr11:406842-406993 | -18.81 | -0.1791 | SIGIRR | ENST00000332725,ENST00000397632,ENST00000431843 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_325891 | chr2:62987930-62988038 | -7.93 | -0.1202 | EHBP1 | ENST00000263991 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_334375 | chr2:227347225-227347384 | -18.36 | -0.1469 | MFF | ENST00000353339 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_423795 | chr4:55888887-55888932 | -6.08 | -0.8686 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
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| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000227719 | ENST00000449931 | exon_skip_95407 | chr12:95040475-95040597 | -11.04 | -0.1871 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_133217 | chr16:8635038-8635079 | -12.09 | -0.3268 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_340759 | chr2:85552415-85552567 | -13.48 | -0.1105 | GGCX | ENST00000233838 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_380242 | chr3:186784961-186785101 | -15.17 | -0.1141 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_382458 | chr3:38131595-38131638 | -6.91 | -0.3637 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_66482 | chr11:126274926-126275021 | -12.49 | -0.1735 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_290158 | chr17:42953723-42953778 | -6.65 | -0.1255 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_300663 | chr19:1425877-1425960 | -11.84 | -0.2467 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_302168 | chr19:10680345-10680443 | -10.62 | -0.1344 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_353395 | chr20:62130218-62130296 | -11.67 | -0.1742 | LSM14B | ENST00000279068 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_370518 | chr22:50247691-50247776 | -13.58 | -0.1787 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_442657 | chr5:74730259-74730398 | -14.35 | -0.1237 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_444499 | chr5:138164086-138164133 | -4.82 | -0.1377 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000227719 | ENST00000449931 | exon_skip_48296 | chr10:26755654-26755741 | -15.59 | -0.2784 | ABI1 | ENST00000376142 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_96112 | chr12:109945259-109945349 | -11.84 | -0.2368 | GIT2 | ENST00000355312 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_376144 | chr3:100311832-100311877 | -8.39 | -0.7627 | TBC1D23 | ENST00000394144 | In-frame | | ENSG00000227719 | ENST00000449931 | exon_skip_382356 | chr3:37091466-37091538 | -7.21 | -0.1387 | LRRFIP2 | ENST00000336686 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000227719 | ENST00000449931 | ECI2 | ENSG00000198721 | ENST00000380118 | -0.1150 | 68 | - | CHOL,PCPG,COAD,READ | | ENSG00000227719 | ENST00000449931 | ECI2 | ENSG00000198721 | ENST00000380125 | -0.1150 | 72 | - | CHOL,PCPG,COAD,READ | | ENSG00000227719 | ENST00000449931 | ECI2 | ENSG00000198721 | ENST00000465828 | -0.1150 | 86 | - | CHOL,PCPG,COAD,READ |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000227719.1 | ENST00000449931.1 | 71 | 218 | 3 |
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