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lncRNA: ENSG00000227258 |
Summary for SMIM2-AS1 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000227258 | Gene symbol | SMIM2-AS1 |
| Gene name | SMIM2 antisense RNA 1 | |
| HGNC | 42674 | |
| Entrez ID | 101929212 | |
| Gene type | antisense | |
| Synonyms | SMIM2-AS1|13q14.11 | |
| UniProtAcc |
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Structure and expression level for SMIM2-AS1 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000227258 | 3.040249e+02 | -2.622954e+00 | 2.862793e-01 | -9.162219e+00 | 5.080000e-20 | 8.310000e-19 | DOWN | KICH |
| ENSG00000227258 | 1.670621e+02 | -1.263840e+00 | 2.385685e-01 | -5.297598e+00 | 1.170000e-07 | 4.990000e-07 | DOWN | COAD |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000227258 | -5.655799e-01 | 7.692385e-09 | KICH | 4.513246e-08 |
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lncRNA-Protein interaction for SMIM2-AS1 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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