 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | L2HGDH,DSTYK,EIF3L,SOS2,NUP153,ZFAND3,PHF3,SEC22C,ZFYVE1,ARID1B,RDX,ZNF45,KBTBD4,BRPF3,SMARCA2,SIK2,KAT6B,C6orf89,FBXO11,GARRE1,DDX6,APPBP2,KLHL5,BPTF,NCOA2,HDHD2,AZI2,DNAJC14,NKIRAS1,KAT2B | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000227053 | ENST00000448513 | exon_skip_83407 | chr12:53465931-53465973 | -8.29 | -0.2241 | PCBP2 | ENST00000439930 | In-frame | | ENSG00000227053 | ENST00000448513 | exon_skip_430434 | chr4:82356536-82356683 | -13.03 | -0.1002 | HNRNPD | ENST00000313899 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000227053 | ENST00000441882 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.3833 | 332 | - | KIRC,KIRP | | ENSG00000227053 | ENST00000441882 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.4161 | 332 | - | KIRC,KIRP | | ENSG00000227053 | ENST00000441882 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1112 | 1 | - | KIRC,KIRP | | ENSG00000227053 | ENST00000441882 | BRPF3 | ENSG00000096070 | ENST00000449261 | -0.1121 | 1 | - | KIRP | | ENSG00000227053 | ENST00000441882 | BRPF3 | ENSG00000096070 | ENST00000532330 | -0.1121 | 1 | - | KIRP | | ENSG00000227053 | ENST00000441882 | BRPF3 | ENSG00000096070 | ENST00000534400 | -0.1262 | 1 | - | KIRP | | ENSG00000227053 | ENST00000441882 | BRPF3 | ENSG00000096070 | ENST00000441123 | -0.1118 | 1 | - | KIRP | | ENSG00000227053 | ENST00000441882 | BRPF3 | ENSG00000096070 | ENST00000441730 | -0.1121 | 1 | - | KIRP | | ENSG00000227053 | ENST00000448513 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.3833 | 302 | - | KIRC,KIRP | | ENSG00000227053 | ENST00000448513 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.4161 | 302 | - | KIRC,KIRP | | ENSG00000227053 | ENST00000448513 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1486 | 123 | - | KIRC,KIRP | | ENSG00000227053 | ENST00000448513 | BRPF3 | ENSG00000096070 | ENST00000449261 | -0.1118 | 1 | - | KIRP | | ENSG00000227053 | ENST00000448513 | BRPF3 | ENSG00000096070 | ENST00000532330 | -0.1118 | 1 | - | KIRP | | ENSG00000227053 | ENST00000448513 | BRPF3 | ENSG00000096070 | ENST00000534400 | -0.1232 | 1 | - | KIRP | | ENSG00000227053 | ENST00000448513 | BRPF3 | ENSG00000096070 | ENST00000441123 | -0.1088 | 1 | - | KIRP | | ENSG00000227053 | ENST00000448513 | BRPF3 | ENSG00000096070 | ENST00000441730 | -0.1118 | 1 | - | KIRP | | ENSG00000227053 | ENST00000448513 | KAT2B | ENSG00000114166 | ENST00000263754 | -0.2532 | 1 | - | HNSC,KIRP |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000227053.1 | ENST00000441882.1 | 228 | 235 | 921 | | ENSG00000227053.1 | ENST00000448513.1 | 85 | 52 | 309 |
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