 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TOM1L1,APOOL,L2HGDH,MAIP1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000227039 | ENST00000429132 | exon_skip_75398 | chr11:72692752-72692785 | -11.49 | -0.4419 | ARAP1 | ENST00000393605 | In-frame | | ENSG00000227039 | ENST00000429132 | exon_skip_285471 | chr17:3723287-3723383 | -10.19 | -0.1199 | ITGAE | ENST00000263087 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000227039 | ENST00000429132 | exon_skip_482403 | chr8:27445793-27445919 | -17.87 | -0.1670 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000227039 | ENST00000429132 | exon_skip_511212 | chrX:71555189-71555385 | -22.34 | -0.1732 | OGT | ENST00000373719 | Frame-shift | | ENSG00000227039 | ENST00000429132 | exon_skip_53559 | chr10:101793912-101793998 | -10.71 | -0.1727 | OGA | ENST00000361464 | Frame-shift | | ENSG00000227039 | ENST00000429132 | exon_skip_95025 | chr12:79805591-79805768 | -19.45 | -0.1271 | PPP1R12A | ENST00000261207,ENST00000450142 | In-frame | | ENSG00000227039 | ENST00000429132 | exon_skip_143275 | chr16:24939363-24939597 | -31.86 | -0.1517 | ARHGAP17 | ENST00000289968 | In-frame | | ENSG00000227039 | ENST00000429132 | exon_skip_454626 | chr6:144827347-144827386 | -5.05 | -0.5050 | UTRN | ENST00000367545 | In-frame | | ENSG00000227039 | ENST00000429132 | exon_skip_499791 | chr9:128627924-128627942 | -6.68 | -0.8350 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000227039 | ENST00000429132 | exon_skip_64939 | chr11:112230207-112230230 | -4.69 | -0.3350 | PTS | ENST00000280362 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000227039 | ENST00000441379 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.2807 | 643 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000441379 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.2038 | 1363 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000441379 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1034 | 396 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000609694 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.6786 | 444 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000609694 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.2479 | 293 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000609694 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1378 | 404 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000609592 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.6271 | 32 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000609592 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.3856 | 374 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000609592 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1136 | 330 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000610063 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.6271 | 29 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000610063 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.3856 | 398 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000610063 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1657 | 330 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000610063 | L2HGDH | ENSG00000087299 | ENST00000554191 | -0.1061 | 204 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000608043 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.6271 | 29 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000608043 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.2479 | 290 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000608043 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1559 | 401 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000429132 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.2054 | 21 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000429132 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.3856 | 172 | - | KIRC,KIRP | | ENSG00000227039 | ENST00000429132 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1324 | 104 | - | KIRC,KIRP |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000227039.5 | ENST00000441379.4 | 72 | 666 | 448 | | ENSG00000227039.5 | ENST00000609694.4 | 199 | 1355 | 1954 | | ENSG00000227039.5 | ENST00000609592.1 | 54 | 543 | 379 | | ENSG00000227039.5 | ENST00000610063.4 | 79 | 410 | 171 | | ENSG00000227039.5 | ENST00000608043.4 | 135 | 450 | 43 | | ENSG00000227039.5 | ENST00000429132.1 | 75 | 325 | 549 |
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