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lncRNA: ENSG00000227036

Summary for LINC00511

Gene summary

Gene information	Ensembl ID	ENSG00000227036
	Gene symbol	LINC00511
	Gene name	long intergenic non-protein coding RNA 511
	HGNC	43564
	Entrez ID	100499467
	Gene type	lincRNA
	Synonyms	LINC00511\|17q24.3
	UniProtAcc

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Structure and expression level for LINC00511

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000227036	2.811772e+03	2.480041e+00	3.783969e-01	6.554073e+00	5.600000e-11	1.170000e-09	UP	GBM
ENSG00000227036	4.663927e+02	4.760826e+00	4.603139e-01	1.034256e+01	4.520000e-25	4.550000e-23	UP	CHOL
ENSG00000227036	1.978790e+03	3.668395e+00	5.071081e-01	7.233952e+00	4.690000e-13	4.850000e-11	UP	CESC
ENSG00000227036	5.487111e+02	2.995264e+00	2.685178e-01	1.115481e+01	6.780000e-29	3.940000e-27	UP	KIRP
ENSG00000227036	5.074663e+02	2.355510e+00	1.930843e-01	1.219938e+01	3.130000e-34	1.340000e-32	UP	UCEC
ENSG00000227036	2.214321e+03	1.300113e+00	2.873554e-01	4.524406e+00	6.060000e-06	1.270980e-04	UP	ESCA
ENSG00000227036	2.207382e+03	4.003829e+00	1.482017e-01	2.701609e+01	9.560000e-161	2.920000e-158	UP	LUSC
ENSG00000227036	1.056221e+03	3.070202e+00	1.519416e-01	2.020646e+01	8.590000e-91	3.230000e-88	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000227036	5.928648e-01	1.776734e-05	CHOL	9.578418e-05
ENSG00000227036	3.173054e-01	3.574908e-15	LUAD	5.154308e-14
ENSG00000227036	3.337972e-01	9.608154e-17	UCEC	1.474310e-15

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lncRNA-Protein interaction for LINC00511

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000116560	SFPQ	47.95	90.3632	P23246	RBP,Epi	eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000227036	ENST00000577828	LINC00511	ENSG00000116560	SFPQ	17.15	90.2376	P23246	RBP,Epi	eCLIP,Scan,pipeline,widely,used,MATCH,algorithm

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000227036	ENST00000580500	LINC00511	ENSG00000083307	GRHL2	9.59	91.3014	Q6ISB3	TF	NA
ENSG00000227036	ENST00000453722	LINC00511	ENSG00000169740	ZNF32	33.26	90.0608	P17041	TF	NA
ENSG00000227036	ENST00000581549	LINC00511	ENSG00000136451	VEZF1	30.83	90.3675	Q14119	TF	NA
ENSG00000227036	ENST00000453722	LINC00511	ENSG00000175691	ZNF77	16.52	91.5599	Q15935	TF	NA
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000101126	ADNP	75.52	90.2436	Q9H2P0	TF,Epi	NA
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000062194	GPBP1	32.01	90.8822	Q86WP2	TF	NA
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000169740	ZNF32	19.48	90.8268	P17041	TF	NA
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000175691	ZNF77	11.61	91.1957	Q15935	TF	NA
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000085274	MYNN	4.16	90.2573	Q9NPC7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000121057	AKAP1	75.48	91.2505	Q92667	RBP	NA
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000100201	DDX17	54.54	92.8221	Q92841	RBP	Predict
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000116560	SFPQ	47.95	92.7939	P23246	RBP,Epi	eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000227036	ENST00000577828	LINC00511	ENSG00000116560	SFPQ	17.15	90.2146	P23246	RBP,Epi	eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000227036	ENST00000457958	LINC00511	ENSG00000147274	RBMX	13.45	92.6059	P38159	RBP	NA
ENSG00000227036	ENST00000581549	LINC00511	ENSG00000147274	RBMX	19.04	90.0947	P38159	RBP	NA
ENSG00000227036	ENST00000581549	LINC00511	ENSG00000161547	SRSF2	6.82	91.2747	Q01130	RBP	NA
ENSG00000227036	ENST00000580500	LINC00511	ENSG00000121057	AKAP1	83.54	92.0142	Q92667	RBP	NA
ENSG00000227036	ENST00000580500	LINC00511	ENSG00000176102	CSTF3	61.86	94.9909	Q12996	RBP	NA

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lncRNA-DNA interaction for LINC00511

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

E2F6,CHTOP,GPBP1,LCOR,PNO1,MLX,ILF2,JMJD6,LSM2,HES1,NRF1,PAIP1,RBM3,RBMX,DDX42,CSTF3,VEZF1,RBM8A,ADNP,ZNF77,SRSF2,AKAP1,MYNN,GRHL2,SRP68,SFPQ,TSN,ZNF3,DDX17

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

MYNN,HES1,KCMF1,DDX17,LSM2,RBM3,JMJD6

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC00511

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

FLI1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000227036	ENST00000581549	exon_skip_44998	chr10:110132304-110132400	-14.03	-0.1631	ADD3	ENST00000356080	In-frame
ENSG00000227036	ENST00000581549	exon_skip_58206	chr11:35211245-35211449	-19.00	-0.1166	CD44	ENST00000428726	In-frame
ENSG00000227036	ENST00000581549	exon_skip_64939	chr11:112230207-112230230	-7.81	-0.7100	PTS	ENST00000280362	Frame-shift
ENSG00000227036	ENST00000581549	exon_skip_114200	chr14:73279280-73279424	-20.40	-0.1759	NUMB	ENST00000355058,ENST00000555238	In-frame
ENSG00000227036	ENST00000581549	exon_skip_132443	chr16:2077597-2077726	-15.67	-0.1741	TSC2	ENST00000219476	In-frame
ENSG00000227036	ENST00000581549	exon_skip_325891	chr2:62987930-62988038	-10.26	-0.1682	EHBP1	ENST00000263991	In-frame
ENSG00000227036	ENST00000581549	exon_skip_378912	chr3:152446703-152446757	-10.77	-0.3714	MBNL1	ENST00000282486,ENST00000463374	In-frame
ENSG00000227036	ENST00000581549	exon_skip_423795	chr4:55888887-55888932	-9.96	-0.2371	EXOC1	ENST00000346134,ENST00000381295	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000227036	ENST00000581549	exon_skip_21628	chr1:9756480-9756510	-9.30	-0.3100	CLSTN1	ENST00000377298	In-frame
ENSG00000227036	ENST00000581549	exon_skip_33516	chr1:156938417-156938513	-16.31	-0.1792	ARHGEF11	ENST00000361409	In-frame
ENSG00000227036	ENST00000581549	exon_skip_43507	chr10:84499874-84499959	-15.04	-0.3498	CCSER2	ENST00000224756	Frame-shift
ENSG00000227036	ENST00000581549	exon_skip_382356	chr3:37091466-37091538	-14.62	-0.2565	LRRFIP2	ENST00000336686	In-frame
ENSG00000227036	ENST00000581549	exon_skip_436488	chr5:96726793-96726859	-9.35	-0.3117	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000227036	ENST00000581549	exon_skip_451515	chr6:41080810-41080897	-16.93	-0.2822	NFYA	ENST00000341376	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000227036	hsa-mir-574	ENST00000579631	chr17:72323234-72323324	159.00	-101.05	68	NA
ENSG00000227036	hsa-mir-574	ENST00000579631	chr17:72323168-72323253	152.00	-93.01	94	NA
ENSG00000227036	hsa-mir-574	ENST00000580199	chr17:72323300-72323402	160.00	-105.30	84	NA
ENSG00000227036	hsa-mir-574	ENST00000580199	chr17:72323173-72323258	152.00	-93.01	94	NA
ENSG00000227036	hsa-mir-574	ENST00000580199	chr17:72323461-72323549	146.00	-91.50	75	NA
ENSG00000227036	hsa-mir-574	ENST00000581801	chr17:72323202-72323301	191.00	-98.67	100	NA
ENSG00000227036	hsa-mir-574	ENST00000581801	chr17:72323321-72323418	183.00	-104.90	91	NA
ENSG00000227036	hsa-mir-574	ENST00000581183	chr17:72324064-72324157	161.00	-106.12	58	NA
ENSG00000227036	hsa-mir-574	ENST00000581183	chr17:72324427-72324529	160.00	-105.30	84	NA
ENSG00000227036	hsa-mir-574	ENST00000581183	chr17:72324361-72324452	153.00	-104.54	96	NA
ENSG00000227036	hsa-mir-574	ENST00000581183	chr17:72324171-72324256	152.00	-93.01	94	NA
ENSG00000227036	hsa-mir-574	ENST00000583460	chr17:72383395-72383483	176.00	-101.47	87	NA
ENSG00000227036	hsa-mir-574	ENST00000583460	chr17:72383303-72383395	169.00	-113.77	82	NA
ENSG00000227036	hsa-mir-574	ENST00000583460	chr17:72383165-72383261	160.00	-84.91	79	NA
ENSG00000227036	hsa-mir-574	ENST00000583460	chr17:72383041-72383145	158.00	-99.25	103	NA
ENSG00000227036	hsa-mir-574	ENST00000583460	chr17:72383566-72383666	149.00	-113.32	78	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72384303-72384403	194.00	-128.18	101	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72384795-72384894	191.00	-98.67	100	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72385411-72385509	191.00	-115.76	75	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72384548-72384641	189.00	-124.26	88	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72385882-72385980	183.00	-115.38	92	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72385254-72385357	171.00	-102.49	101	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72385002-72385105	163.00	-104.20	96	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72384645-72384739	156.00	-120.63	77	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72385113-72385211	149.00	-97.39	79	NA
ENSG00000227036	hsa-mir-574	ENST00000453722	chr17:72385654-72385759	148.00	-106.76	101	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72403351-72403450	191.00	-98.67	100	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72404747-72404846	187.00	-105.50	92	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72403480-72403590	181.00	-109.52	109	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72404171-72404265	175.00	-91.11	88	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72404427-72404519	171.00	-95.76	86	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72404254-72404350	166.00	-94.23	93	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72404637-72404732	162.00	-105.92	98	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72404010-72404105	152.00	-99.64	93	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72403836-72403936	149.00	-113.06	88	NA
ENSG00000227036	hsa-mir-574	ENST00000457958	chr17:72403706-72403818	145.00	-106.19	107	NA
ENSG00000227036	hsa-mir-574	ENST00000578206	chr17:72404250-72404356	197.00	-113.50	106	NA
ENSG00000227036	hsa-mir-574	ENST00000578206	chr17:72404365-72404460	189.00	-110.55	85	NA
ENSG00000227036	hsa-mir-574	ENST00000578206	chr17:72404880-72404975	152.00	-99.64	93	NA
ENSG00000227036	hsa-mir-574	ENST00000578206	chr17:72404706-72404806	149.00	-113.06	88	NA
ENSG00000227036	hsa-mir-574	ENST00000578206	chr17:72404576-72404688	145.00	-106.19	107	NA
ENSG00000227036	hsa-mir-574	ENST00000580500	chr17:72404745-72404855	181.00	-109.52	109	NA
ENSG00000227036	hsa-mir-574	ENST00000580500	chr17:72404971-72405083	145.00	-106.19	107	NA
ENSG00000227036	hsa-mir-574	ENST00000577828	chr17:72404793-72404906	209.00	-126.44	110	NA
ENSG00000227036	hsa-mir-574	ENST00000577828	chr17:72404672-72404769	192.00	-109.59	97	NA
ENSG00000227036	hsa-mir-574	ENST00000577828	chr17:72404966-72405066	180.00	-105.86	89	NA
ENSG00000227036	hsa-mir-574	ENST00000580948	chr17:72404772-72404885	209.00	-126.44	110	NA
ENSG00000227036	hsa-mir-574	ENST00000580948	chr17:72404945-72405045	180.00	-105.86	89	NA
ENSG00000227036	hsa-mir-574	ENST00000580948	chr17:72404661-72404718	164.00	-94.18	59	NA
ENSG00000227036	hsa-mir-574	ENST00000582712	chr17:72420981-72421047	153.00	-87.45	72	NA
ENSG00000227036	hsa-mir-574	ENST00000577773	chr17:72421972-72422078	197.00	-113.50	106	NA
ENSG00000227036	hsa-mir-574	ENST00000577773	chr17:72422087-72422175	168.00	-105.18	80	NA
ENSG00000227036	hsa-mir-574	ENST00000577773	chr17:72422196-72422293	148.00	-100.73	73	NA
ENSG00000227036	hsa-mir-574	ENST00000584749	chr17:72428217-72428321	173.00	-96.54	95	NA
ENSG00000227036	hsa-mir-574	ENST00000584749	chr17:72428132-72428226	163.00	-92.73	92	NA
ENSG00000227036	hsa-mir-574	ENST00000584749	chr17:72428037-72428133	148.00	-99.27	97	NA
ENSG00000227036	hsa-mir-574	ENST00000580175	chr17:72428503-72428603	170.00	-113.62	99	NA
ENSG00000227036	hsa-mir-574	ENST00000580175	chr17:72428276-72428365	156.00	-94.63	94	NA
ENSG00000227036	hsa-mir-574	ENST00000580175	chr17:72428378-72428479	150.00	-106.96	101	NA
ENSG00000227036	hsa-mir-574	ENST00000580861	chr17:72431427-72431527	182.00	-107.36	85	NA
ENSG00000227036	hsa-mir-574	ENST00000580861	chr17:72431207-72431311	180.00	-108.56	96	NA
ENSG00000227036	hsa-mir-574	ENST00000580861	chr17:72431346-72431447	166.00	-110.17	99	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72598403-72598502	196.00	-106.55	99	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72599059-72599159	182.00	-107.36	85	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72598159-72598252	181.00	-100.23	93	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72598839-72598943	180.00	-108.56	96	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72598632-72598726	173.00	-100.28	73	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72598042-72598121	170.00	-104.86	77	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72598978-72599079	166.00	-110.17	99	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72600171-72600283	166.00	-101.16	112	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72599403-72599497	157.00	-95.34	97	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72599630-72599729	150.00	-97.08	100	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72599172-72599263	148.00	-87.27	94	NA
ENSG00000227036	hsa-mir-574	ENST00000581549	chr17:72598507-72598597	146.00	-97.53	95	NA

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Variants for LINC00511

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_334559	ENSG00000227036.5	chr17	72499512	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334583	ENSG00000227036.5	chr17	72499556	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334703	ENSG00000227036.5	chr17	72512495	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334711	ENSG00000227036.5	chr17	72512524	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334715	ENSG00000227036.5	chr17	72512531	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334859	ENSG00000227036.5	chr17	72526159	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334863	ENSG00000227036.5	chr17	72526164	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334867	ENSG00000227036.5	chr17	72526165	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334871	ENSG00000227036.5	chr17	72526191	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334875	ENSG00000227036.5	chr17	72526194	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334879	ENSG00000227036.5	chr17	72526195	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334895	ENSG00000227036.5	chr17	72526231	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_334899	ENSG00000227036.5	chr17	72526299	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_335031	ENSG00000227036.5	chr17	72546840	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014
LncEditing_335063	ENSG00000227036.5	chr17	72551836	-	lincRNA	LINC00511	ENST00000581801.4	lincRNA	LINC00511-014

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000227036	LncEditing_334863	STAD	chr17_72526164_-	3.173047e+00	2.639933e+00	3.768355e+00	3.183158e+00	1.456779e-03	1.556797e-03	UP
ENSG00000227036	LncEditing_334871	STAD	chr17_72526191_-	2.998638e+00	2.673137e+00	6.032327e+00	2.119374e+00	3.405887e-02	3.425021e-02	UP
ENSG00000227036	LncEditing_334559	ESCA	chr17_72499512_-	5.427204e+00	3.230157e+00	1.335818e+00	3.987384e+00	6.680573e-05	8.532895e-05	UP
ENSG00000227036	LncEditing_334583	ESCA	chr17_72499556_-	5.945609e+00	3.381507e+00	1.228263e+00	3.729847e+00	1.915961e-04	2.333442e-04	UP
ENSG00000227036	LncEditing_334703	ESCA	chr17_72512495_-	7.097988e+00	3.272781e+00	8.953409e-01	4.726857e+00	2.280214e-06	3.503906e-06	UP
ENSG00000227036	LncEditing_334711	ESCA	chr17_72512524_-	7.386338e+00	3.241181e+00	8.415103e-01	5.344380e+00	9.072693e-08	1.696375e-07	UP
ENSG00000227036	LncEditing_334715	ESCA	chr17_72512531_-	6.957109e+00	3.211250e+00	8.965773e-01	4.791547e+00	1.654999e-06	2.592584e-06	UP
ENSG00000227036	LncEditing_334859	ESCA	chr17_72526159_-	5.520117e+00	3.259930e+00	1.316036e+00	3.100726e+00	1.930466e-03	2.155704e-03	UP
ENSG00000227036	LncEditing_334863	ESCA	chr17_72526164_-	5.203311e+00	3.089509e+00	1.329694e+00	4.094603e+00	4.228931e-05	5.515768e-05	UP
ENSG00000227036	LncEditing_334867	ESCA	chr17_72526165_-	5.730747e+00	3.288811e+00	1.248195e+00	3.866033e+00	1.106202e-04	1.380118e-04	UP
ENSG00000227036	LncEditing_334871	ESCA	chr17_72526191_-	4.930235e+00	3.258427e+00	1.673695e+00	3.632534e+00	2.806516e-04	3.376841e-04	UP
ENSG00000227036	LncEditing_334875	ESCA	chr17_72526194_-	5.257725e+00	3.437043e+00	1.630601e+00	2.204476e+00	2.749087e-02	2.801209e-02	UP
ENSG00000227036	LncEditing_334879	ESCA	chr17_72526195_-	4.741183e+00	3.514254e+00	2.314662e+00	3.272259e+00	1.066917e-03	1.214698e-03	UP
ENSG00000227036	LncEditing_334895	ESCA	chr17_72526231_-	5.867048e+00	3.338401e+00	1.229290e+00	3.533435e+00	4.101968e-04	4.849252e-04	UP
ENSG00000227036	LncEditing_334899	ESCA	chr17_72526299_-	5.580562e+00	3.137928e+00	1.203952e+00	4.890286e+00	1.006897e-06	1.618448e-06	UP
ENSG00000227036	LncEditing_335031	ESCA	chr17_72546840_-	5.250195e+00	3.330657e+00	1.523080e+00	4.276189e+00	1.901202e-05	2.574238e-05	UP
ENSG00000227036	LncEditing_335063	ESCA	chr17_72551836_-	6.984082e+00	3.285264e+00	9.190661e-01	4.232839e+00	2.307597e-05	3.098478e-05	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000227036.5	ENST00000579631.1	90	898	626
ENSG00000227036.5	ENST00000580199.4	39	39	158
ENSG00000227036.5	ENST00000581801.4	58	393	217
ENSG00000227036.5	ENST00000581183.1	65	73	270
ENSG00000227036.5	ENST00000583460.1	79	102	341
ENSG00000227036.5	ENST00000453722.5	178	753	217
ENSG00000227036.5	ENST00000457958.5	141	424	2
ENSG00000227036.5	ENST00000578206.1	161	769	284
ENSG00000227036.5	ENST00000580500.4	161	810	325
ENSG00000227036.5	ENST00000577828.4	104	413	99
ENSG00000227036.5	ENST00000580948.1	99	297	1
ENSG00000227036.5	ENST00000582712.1	80	35	277
ENSG00000227036.5	ENST00000584749.1	81	48	293
ENSG00000227036.5	ENST00000580175.1	77	132	365
ENSG00000227036.5	ENST00000580861.1	63	225	34
ENSG00000227036.5	ENST00000581549.1	77	146	379

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential