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lncRNA: ENSG00000226332

Summary for RP11-157P1.4

Gene summary

Gene information	Ensembl ID	ENSG00000226332
	Gene symbol	RP11-157P1.4
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-157P1.4

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000226332	1.659137e+02	1.909696e+00	3.872409e-01	4.931546e+00	8.160000e-07	5.440000e-06	UP	CHOL
ENSG00000226332	1.737417e+02	1.795946e+00	1.481585e-01	1.212179e+01	8.100000e-34	9.920000e-33	UP	KIRC
ENSG00000226332	3.792276e+02	2.223124e+00	5.999598e-01	3.705455e+00	2.110120e-04	2.252780e-03	UP	CESC
ENSG00000226332	2.078608e+02	1.462478e+00	2.113621e-01	6.919300e+00	4.540000e-12	3.560000e-11	UP	UCEC
ENSG00000226332	2.519650e+02	1.081184e+00	2.389826e-01	4.524114e+00	6.060000e-06	1.272090e-04	UP	ESCA
ENSG00000226332	5.960009e+01	1.504692e+00	1.538696e-01	9.779005e+00	1.390000e-22	2.210000e-21	UP	COAD
ENSG00000226332	6.769472e+01	1.324967e+00	2.940285e-01	4.506253e+00	6.600000e-06	6.830000e-05	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000226332	6.428979e-01	1.916049e-06	CHOL	2.694683e-05
ENSG00000226332	3.245366e-01	3.522966e-03	UVM	2.184239e-02

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lncRNA-Protein interaction for RP11-157P1.4

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for RP11-157P1.4

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-157P1.4

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,PARP1,NEK4,KPNB1,TUBA1B,VPS26C,PNPO,SLC30A6,VPS4B,UHRF1BP1L,OXSR1,HACD3,RNF123,CHP1,FCF1,BECN1,RFC1,RDX,UCHL5,FAM104A,PIK3CB,SECISBP2L,TSR1,PTPN11,MID2,TBC1D15,EDEM1,AMN1,BZW1,NEDD1,UBE4A,SLAIN2,GDI2,CDV3,SRP72,STAG2,SCFD2,SEC24B,CLTC,ATRN,RABL3,MAN1A2,GMPS,PARG,L2HGDH,SDHC,DHX8,NBR1,LZIC,ATP11B,BIRC2,SNX19,HSPA8,KTN1,GART,M6PR,ABCB7,PAK2,CDK4,STRN,SDHD,COPS4,SSR3,USP32,G3BP1,DOCK7,PLPBP,TMCO3,SMARCA2,WBP11,MORF4L1,DAZAP2,SLMAP,SDCBP,API5,APPBP2,STRAP,SEC23A,IQGAP2,PRMT5,STK24,CCNI,RTCB,ATP5PB,DDX3X,CLCC1,IPO5,ASXL2,PTDSS1,PSME3,MFSD14A,TBC1D8B,ILRUN,CNIH1,COPB2,WIPF2,PRKAR2A,FBXL14,MFAP3,NBAS,PIKFYVE,PRPS1,BRCC3,USP9X,NIPA2,SCARB2,IPO8,UBE4B,UEVLD,VPS35,SLC35A5,KBTBD4,HMGCR,CHTF8,URI1,ARL1,STT3A,GTF3C3,MAIP1,UGP2,GALK2,WDR7,OSBPL8,NCOA4,SMG6,SF3A1,ADH5,NDUFS1,TMLHE,COG6,NUP98,EPS15,IGF2R,AZI2,ST13,TTI2,ACTR2,DCAF7,VAMP7,TBC1D23,TRIP12,GFM2,HYOU1,GTF2A1,MRPL49,TFIP11,NSF,TNPO1,ACTR8,SEC23B,SNX2,SARAF,KIF2A,MED1,NUP58,GTF2I,EIF3L,TVP23B,REST,SNX4,HBP1,EIF4G2,SEC62,THRAP3,LARS2,SDHB,RO60,NAA50,UTP18,CAB39,HUWE1,HEATR5B,POLK,PRKAR1A,ACADM,SEC31A,YME1L1,CYFIP1,CLINT1,BLOC1S6,ZNF28,VRK2,GCC2,ARL2BP,TMEM184C,DEK,TEX2,FAM114A2,RABEP1,ITFG1,PDCD10,BTD,ABCD3,USP10,PNO1,CANX,EFL1,CPSF2,ATF1,ADAT1,PSMD1,ASNSD1,MCFD2,SPOPL,ZFYVE9,WSB2,NOMO2,PGM2,RAB6A

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000226332	ENST00000414042	exon_skip_7523	chr1:78660553-78660654	-13.95	-0.1567	IFI44	ENST00000370747	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_114365	chr14:74290026-74290118	-16.83	-0.2214	ABCD4	ENST00000356924	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_384420	chr3:49812647-49812738	-15.49	-0.1866	UBA7	ENST00000333486	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_11029	chr1:154989559-154989707	-22.89	-0.1846	FLAD1	ENST00000292180	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_66185	chr11:124626472-124626609	-18.71	-0.1817	TBRG1	ENST00000441174	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_95407	chr12:95040475-95040597	-15.33	-0.1460	NR2C1	ENST00000333003	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_111863	chr14:23565815-23565892	-15.88	-0.2406	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_309204	chr19:49181348-49181461	-25.67	-0.2517	TRPM4	ENST00000252826	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_319223	chr19:43526200-43526349	-20.51	-0.1508	ETHE1	ENST00000292147	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_382458	chr3:38131595-38131638	-8.96	-0.2422	ACAA1	ENST00000333167	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_436035	chr5:79656957-79657001	-6.78	-0.1614	TENT2	ENST00000296783,ENST00000428308,ENST00000453514	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_23423	chr1:26294204-26294331	-15.11	-0.1209	UBXN11	ENST00000374221,ENST00000374222	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_41813	chr10:68337857-68337996	-16.42	-0.1263	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_53559	chr10:101793912-101793998	-14.01	-0.1819	OGA	ENST00000361464	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_62623	chr11:69079833-69079883	-9.06	-0.3124	TPCN2	ENST00000294309	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_87733	chr12:120571190-120571291	-13.59	-0.1544	RNF10	ENST00000325954	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_92074	chr12:50142052-50142110	-10.00	-0.2564	CERS5	ENST00000317551	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_133217	chr16:8635038-8635079	-11.46	-0.5209	METTL22	ENST00000381920	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_139422	chr16:89114338-89114487	-22.55	-0.1762	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_290158	chr17:42953723-42953778	-11.59	-0.3050	AARSD1	ENST00000427569	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_292904	chr17:69251746-69251866	-13.78	-0.1288	ABCA5	ENST00000392676,ENST00000588877	In-frame
ENSG00000226332	ENST00000414042	exon_skip_300663	chr19:1425877-1425960	-10.22	-0.1278	DAZAP1	ENST00000233078	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_302168	chr19:10680345-10680443	-16.72	-0.1742	ILF3	ENST00000590261	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_316876	chr19:19634506-19634703	-29.51	-0.1639	GMIP	ENST00000203556	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_339830	chr2:69423581-69423717	-16.73	-0.1394	NFU1	ENST00000410022	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_353131	chr20:58669290-58669453	-27.62	-0.1918	STX16	ENST00000371141	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_370518	chr22:50247691-50247776	-13.99	-0.1686	HDAC10	ENST00000216271	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_370525	chr22:50250426-50250523	-16.53	-0.2147	HDAC10	ENST00000216271	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_370700	chr22:50314399-50314494	-16.60	-0.1804	DENND6B	ENST00000413817	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_374497	chr3:49999439-49999513	-11.19	-0.1834	RBM6	ENST00000266022	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_377198	chr3:123130479-123130616	-16.22	-0.1461	PDIA5	ENST00000316218	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_378467	chr3:143023974-143024018	-8.16	-0.2720	U2SURP	ENST00000473835	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_380242	chr3:186784961-186785101	-14.86	-0.1228	EIF4A2	ENST00000323963	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_387016	chr3:121788283-121788432	-14.64	-0.1003	IQCB1	ENST00000310864	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_442657	chr5:74730259-74730398	-20.32	-0.1551	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_444499	chr5:138164086-138164133	-7.71	-0.3212	BRD8	ENST00000254900	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_462144	chr6:125298713-125298816	-12.56	-0.1444	HDDC2	ENST00000398153	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_466113	chr7:48099669-48099787	-8.87	-0.1031	UPP1	ENST00000331803,ENST00000395564	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_470226	chr7:103307595-103307708	-13.21	-0.1283	PMPCB	ENST00000249269	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_509943	chrX:47175018-47175092	-12.82	-0.1942	RBM10	ENST00000377604	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_9446	chr1:147270931-147271005	-12.59	-0.1908	CHD1L	ENST00000369258	Frame-shift
ENSG00000226332	ENST00000414042	exon_skip_327433	chr2:86125794-86125880	-11.43	-0.1610	PTCD3	ENST00000254630	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-157P1.4

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000226332	ENST00000414042	SDHB	ENSG00000117118	ENST00000375499	-0.1028	362	-	CHOL
ENSG00000226332	ENST00000414042	NCOA4	ENSG00000266412	ENST00000579039	-0.1392	322	-	CHOL,COAD,READ
ENSG00000226332	ENST00000414042	CNIH1	ENSG00000100528	ENST00000556113	-0.1470	201	-	CHOL
ENSG00000226332	ENST00000414042	ARL2BP	ENSG00000102931	ENST00000562023	-0.1453	309	-	UCEC
ENSG00000226332	ENST00000414042	CCNI	ENSG00000118816	ENST00000515468	-0.1421	68	-	CESC
ENSG00000226332	ENST00000414042	CCNI	ENSG00000118816	ENST00000511943	-0.1058	290	-	CESC
ENSG00000226332	ENST00000414042	SMG6	ENSG00000070366	ENST00000536871	-0.2396	457	-	UCEC
ENSG00000226332	ENST00000414042	HACD3	ENSG00000074696	ENST00000565299	-0.1055	70	-	KIRC
ENSG00000226332	ENST00000414042	SEC62	ENSG00000008952	ENST00000480708	-0.1211	1	-	CHOL
ENSG00000226332	ENST00000414042	LARS2	ENSG00000011376	ENST00000414984	-0.2553	229	-	CHOL,KIRC
ENSG00000226332	ENST00000414042	SMARCA2	ENSG00000080503	ENST00000382186	-0.4950	196	-	CHOL,UCEC
ENSG00000226332	ENST00000414042	SEC23A	ENSG00000100934	ENST00000557280	-0.1357	248	-	CHOL,CESC,UCEC
ENSG00000226332	ENST00000414042	SEC23A	ENSG00000100934	ENST00000553970	-0.1357	248	-	CHOL,CESC,UCEC
ENSG00000226332	ENST00000414042	PNPO	ENSG00000108439	ENST00000584061	-0.1333	312	-	CHOL
ENSG00000226332	ENST00000414042	PNPO	ENSG00000108439	ENST00000583245	-0.1131	237	-	CHOL
ENSG00000226332	ENST00000414042	PNPO	ENSG00000108439	ENST00000585320	-0.1528	302	-	CHOL
ENSG00000226332	ENST00000414042	HMGCR	ENSG00000113161	ENST00000509085	-0.1113	203	-	CHOL,KIRC
ENSG00000226332	ENST00000414042	HMGCR	ENSG00000113161	ENST00000511986	-0.1224	204	-	CHOL,KIRC
ENSG00000226332	ENST00000414042	ACADM	ENSG00000117054	ENST00000420607	-0.1284	625	-	CHOL,KIRC,COAD,READ
ENSG00000226332	ENST00000414042	ACADM	ENSG00000117054	ENST00000528016	-0.1002	1	-	CHOL,KIRC,COAD,READ
ENSG00000226332	ENST00000414042	EDEM1	ENSG00000134109	ENST00000443790	-0.1391	1	-	CHOL
ENSG00000226332	ENST00000414042	EDEM1	ENSG00000134109	ENST00000445686	-0.4209	384	-	CHOL
ENSG00000226332	ENST00000414042	RDX	ENSG00000137710	ENST00000534683	-0.1950	368	-	CHOL,READ
ENSG00000226332	ENST00000414042	RDX	ENSG00000137710	ENST00000533678	-0.1238	286	-	CHOL,READ
ENSG00000226332	ENST00000414042	SEC24B	ENSG00000138802	ENST00000504968	-0.1673	356	-	CHOL
ENSG00000226332	ENST00000414042	SEC24B	ENSG00000138802	ENST00000399100	-0.4214	659	-	CHOL
ENSG00000226332	ENST00000414042	IQGAP2	ENSG00000145703	ENST00000396234	-0.1797	1	-	CHOL,KIRC,ESCA,COAD,READ
ENSG00000226332	ENST00000414042	IQGAP2	ENSG00000145703	ENST00000502745	-0.1797	1	-	CHOL,KIRC,ESCA,COAD,READ
ENSG00000226332	ENST00000414042	PRPS1	ENSG00000147224	ENST00000372419	-0.5400	57	-	CHOL
ENSG00000226332	ENST00000414042	RNF123	ENSG00000164068	ENST00000327697	-0.1387	117	-	CHOL
ENSG00000226332	ENST00000414042	RNF123	ENSG00000164068	ENST00000432042	-0.2234	220	-	CHOL
ENSG00000226332	ENST00000414042	RNF123	ENSG00000164068	ENST00000443204	-0.1296	40	-	CHOL
ENSG00000226332	ENST00000414042	RNF123	ENSG00000164068	ENST00000433785	-0.1387	118	-	CHOL
ENSG00000226332	ENST00000414042	RNF123	ENSG00000164068	ENST00000444689	-0.1177	179	-	CHOL
ENSG00000226332	ENST00000414042	UGP2	ENSG00000169764	ENST00000483108	-0.1147	248	-	CHOL,COAD,READ
ENSG00000226332	ENST00000414042	BTD	ENSG00000169814	ENST00000417015	-0.1084	224	-	CHOL,CESC,ESCA,COAD
ENSG00000226332	ENST00000414042	BTD	ENSG00000169814	ENST00000449107	-0.2075	428	-	CHOL,CESC,ESCA,COAD
ENSG00000226332	ENST00000414042	BTD	ENSG00000169814	ENST00000303498	-0.1016	428	-	CHOL,CESC,ESCA,COAD
ENSG00000226332	ENST00000414042	BTD	ENSG00000169814	ENST00000437172	-0.1046	200	-	CHOL,CESC,ESCA,COAD
ENSG00000226332	ENST00000414042	BTD	ENSG00000169814	ENST00000383778	-0.1016	428	-	CHOL,CESC,ESCA,COAD
ENSG00000226332	ENST00000414042	ABCD3	ENSG00000117528	ENST00000315713	-0.1633	205	-	CHOL,KIRC,COAD,READ
ENSG00000226332	ENST00000414042	VPS4B	ENSG00000119541	ENST00000591519	-0.4391	479	-	COAD,READ
ENSG00000226332	ENST00000414042	SDHD	ENSG00000204370	ENST00000534010	-0.1220	429	-	CHOL,COAD,READ
ENSG00000226332	ENST00000414042	SECISBP2L	ENSG00000138593	ENST00000561428	-0.1732	283	-	CESC,ESCA,READ
ENSG00000226332	ENST00000414042	NDUFS1	ENSG00000023228	ENST00000449699	-0.1958	43	-	CHOL,KIRC
ENSG00000226332	ENST00000414042	NDUFS1	ENSG00000023228	ENST00000432169	-0.1958	43	-	CHOL,KIRC
ENSG00000226332	ENST00000414042	NDUFS1	ENSG00000023228	ENST00000456284	-0.1118	114	-	CHOL,KIRC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000226332.2	ENST00000414042.1	90	177	449

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential