Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000226328

Summary for NUP50-DT

Gene summary

Gene information	Ensembl ID	ENSG00000226328
	Gene symbol	NUP50-DT
	Gene name	NUP50 divergent transcript
	HGNC	50502
	Entrez ID	100506714
	Gene type	lincRNA
	Synonyms	NUP50-AS1\|NUP50-DT\|22q13.31
	UniProtAcc

Top

Structure and expression level for NUP50-DT

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000226328	6.689335e+02	1.466559e+00	1.358385e-01	1.079634e+01	3.580000e-27	3.340000e-26	UP	LUSC
ENSG00000226328	2.393064e+02	1.087432e+00	2.886783e-01	3.766933e+00	1.652650e-04	1.171202e-03	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000226328	5.687466e-01	4.576921e-05	CHOL	1.733869e-04
ENSG00000226328	4.640463e-01	4.642620e-06	KICH	1.087777e-05

Top

lncRNA-Protein interaction for NUP50-DT

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000226328	ENST00000609284	NUP50-AS1	ENSG00000167967	E4F1	67.54	92.8464	Q66K89	TF	NA
ENSG00000226328	ENST00000609284	NUP50-AS1	ENSG00000099326	MZF1	53.62	90.3974	P28698	TF	ChIP-seq

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000226328	ENST00000609284	NUP50-AS1	ENSG00000111641	NOP2	66.84	92.044	P46087	RBP	NA
ENSG00000226328	ENST00000609284	NUP50-AS1	ENSG00000004534	RBM6	64.34	93.6662	P78332	RBP	NA
ENSG00000226328	ENST00000609284	NUP50-AS1	ENSG00000003756	RBM5	60.09	92.2254	P52756	RBP	NA

Top

lncRNA-DNA interaction for NUP50-DT

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

CHTOP,LSM5,RBM6,SLIRP,ISG20,THYN1,NOP2,ZC3H8,E2F1,GLI4,DDX49,CENPT,MYPOP,HSF4,RBM5,IRF3,MRM1,DDX56,IMP3,TIGD5,MZF1,LSM4,ATF4,PIN1,THOC5,TRUB2,CSTF3,RBM45,CPSF1,RNPS1,NR2F6,RPP25,MBD3,RRP7A,PCBP4,SMYD3,THAP3,MESP1,SRSF2,HINFP,XPA,CPSF4,EIF3B,DDX55,THOC7,PPIE,PBX4,ZMAT1,USF1,PREB,CXXC1,NXF1,ZNF18,DDX17,SRSF7

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

THOC5,DDX17,RRP7A,MZF1,ZNF18,E4F1,RBM5,CXXC1,ZMAT1,THAP7,RNPS1,RBM6,SMYD3,PBX4,THAP3

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for NUP50-DT

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000226328	ENST00000609284	exon_skip_83419	chr12:53467804-53467843	-7.80	-0.3545	PCBP2	ENST00000439930	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000226328	ENST00000609284	exon_skip_445390	chr5:150403120-150403312	-22.15	-0.1420	CD74	ENST00000009530	In-frame
ENSG00000226328	ENST00000609284	exon_skip_370518	chr22:50247691-50247776	-11.56	-0.1501	HDAC10	ENST00000216271	Frame-shift
ENSG00000226328	ENST00000609284	exon_skip_377198	chr3:123130479-123130616	-17.17	-0.1431	PDIA5	ENST00000316218	Frame-shift
ENSG00000226328	ENST00000609284	exon_skip_380242	chr3:186784961-186785101	-15.14	-0.1262	EIF4A2	ENST00000323963	Frame-shift
ENSG00000226328	ENST00000609284	exon_skip_470226	chr7:103307595-103307708	-11.75	-0.1728	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for NUP50-DT

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_393437	ENSG00000226328.5	chr22	45133151	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393451	ENSG00000226328.5	chr22	45133222	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393454	ENSG00000226328.5	chr22	45133249	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393458	ENSG00000226328.5	chr22	45133255	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393469	ENSG00000226328.5	chr22	45133286	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393475	ENSG00000226328.5	chr22	45133311	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393477	ENSG00000226328.5	chr22	45133322	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393480	ENSG00000226328.5	chr22	45133357	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393481	ENSG00000226328.5	chr22	45133358	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393482	ENSG00000226328.5	chr22	45133364	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393485	ENSG00000226328.5	chr22	45133443	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393487	ENSG00000226328.5	chr22	45133449	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393489	ENSG00000226328.5	chr22	45133462	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393491	ENSG00000226328.5	chr22	45133471	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393496	ENSG00000226328.5	chr22	45133521	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393511	ENSG00000226328.5	chr22	45133622	-	lincRNA	NUP50-AS1	ENST00000426282.5	lincRNA	NUP50-AS1-001
LncEditing_393584	ENSG00000226328.5	chr22	45140348	-	lincRNA	NUP50-AS1	ENST00000609284.1	lincRNA	NUP50-AS1-003
LncEditing_393599	ENSG00000226328.5	chr22	45140384	-	lincRNA	NUP50-AS1	ENST00000609284.1	lincRNA	NUP50-AS1-003
LncEditing_393647	ENSG00000226328.5	chr22	45140513	-	lincRNA	NUP50-AS1	ENST00000609284.1	lincRNA	NUP50-AS1-003
LncEditing_393650	ENSG00000226328.5	chr22	45140514	-	lincRNA	NUP50-AS1	ENST00000609284.1	lincRNA	NUP50-AS1-003
LncEditing_393815	ENSG00000226328.5	chr22	45150254	-	lincRNA	NUP50-AS1	ENST00000609284.1	lincRNA	NUP50-AS1-003
LncEditing_393904	ENSG00000226328.5	chr22	45152596	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_393934	ENSG00000226328.5	chr22	45154222	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_394019	ENSG00000226328.5	chr22	45157170	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_394027	ENSG00000226328.5	chr22	45157198	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_394085	ENSG00000226328.5	chr22	45161737	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_394087	ENSG00000226328.5	chr22	45161738	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_394097	ENSG00000226328.5	chr22	45161773	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_394167	ENSG00000226328.5	chr22	45162985	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002
LncEditing_394179	ENSG00000226328.5	chr22	45163055	-	lincRNA	NUP50-AS1	ENST00000432502.1	lincRNA	NUP50-AS1-002

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000226328	LncEditing_393475	UCEC	chr22_45133311_-	5.231735e+00	3.079612e+00	1.307974e+00	7.796337e+00	6.372993e-15	1.652995e-14	UP
ENSG00000226328	LncEditing_393487	UCEC	chr22_45133449_-	5.316617e+00	2.980703e+00	1.197811e+00	9.956696e+00	2.357683e-23	1.198088e-22	UP
ENSG00000226328	LncEditing_393469	SARC	chr22_45133286_-	5.301392e+00	2.661727e+00	1.006028e+00	7.013072e+00	2.331411e-12	5.444877e-12	UP
ENSG00000226328	LncEditing_393475	SARC	chr22_45133311_-	5.011779e+00	2.750885e+00	1.155499e+00	6.118623e+00	9.438747e-10	1.597659e-09	UP
ENSG00000226328	LncEditing_393480	SARC	chr22_45133357_-	3.787911e+00	2.954387e+00	2.789060e+00	4.210813e+00	2.544536e-05	3.019079e-05	UP
ENSG00000226328	LncEditing_393481	SARC	chr22_45133358_-	3.909850e+00	2.979538e+00	2.550862e+00	3.680201e+00	2.330498e-04	2.598048e-04	UP
ENSG00000226328	LncEditing_393487	SARC	chr22_45133449_-	4.755507e+00	2.560967e+00	1.119933e+00	7.778481e+00	7.340034e-15	2.440065e-14	UP
ENSG00000226328	LncEditing_393469	LIHC	chr22_45133286_-	7.101406e+00	3.401697e+00	9.417525e-01	9.322925e+00	1.131767e-20	5.701544e-20	UP
ENSG00000226328	LncEditing_393475	LIHC	chr22_45133311_-	6.378799e+00	2.956148e+00	9.012532e-01	1.151297e+01	1.135013e-30	1.683602e-29	UP
ENSG00000226328	LncEditing_393477	LIHC	chr22_45133322_-	6.940889e+00	3.346859e+00	9.502880e-01	9.143271e+00	6.059144e-20	2.527799e-19	UP
ENSG00000226328	LncEditing_393480	LIHC	chr22_45133357_-	5.645424e+00	3.341756e+00	1.321920e+00	7.739520e+00	9.979314e-15	2.378997e-14	UP
ENSG00000226328	LncEditing_393481	LIHC	chr22_45133358_-	5.990613e+00	3.510039e+00	1.296653e+00	7.177919e+00	7.078025e-13	1.453717e-12	UP
ENSG00000226328	LncEditing_393482	LIHC	chr22_45133364_-	6.167175e+00	3.484760e+00	1.214254e+00	7.926757e+00	2.249426e-15	5.613054e-15	UP
ENSG00000226328	LncEditing_393485	LIHC	chr22_45133443_-	6.865719e+00	3.718947e+00	1.130561e+00	6.625870e+00	3.452095e-11	6.679053e-11	UP
ENSG00000226328	LncEditing_393487	LIHC	chr22_45133449_-	6.306225e+00	3.036896e+00	9.486055e-01	1.107255e+01	1.704816e-28	2.069026e-27	UP
ENSG00000226328	LncEditing_393489	LIHC	chr22_45133462_-	7.539255e+00	3.617544e+00	9.439203e-01	7.283162e+00	3.260860e-13	6.801951e-13	UP
ENSG00000226328	LncEditing_393491	LIHC	chr22_45133471_-	7.459306e+00	3.557819e+00	9.362872e-01	8.243776e+00	1.668588e-16	4.546052e-16	UP
ENSG00000226328	LncEditing_393469	UCS	chr22_45133286_-	3.530108e+00	2.313791e+00	1.640814e+00	2.370484e+00	1.776481e-02	2.141407e-02	UP
ENSG00000226328	LncEditing_393475	UCS	chr22_45133311_-	4.129518e+00	2.217536e+00	1.114807e+00	2.755027e+00	5.868724e-03	8.497187e-03	UP
ENSG00000226328	LncEditing_393477	UCS	chr22_45133322_-	3.546671e+00	2.235011e+00	1.501088e+00	2.786343e+00	5.330647e-03	8.028083e-03	UP
ENSG00000226328	LncEditing_393481	UCS	chr22_45133358_-	3.143441e+00	2.335865e+00	2.334335e+00	1.986799e+00	4.694473e-02	4.745087e-02	UP
ENSG00000226328	LncEditing_393487	UCS	chr22_45133449_-	3.430572e+00	2.323550e+00	1.778984e+00	2.284285e+00	2.235480e-02	2.540319e-02	UP
ENSG00000226328	LncEditing_393458	DLBC	chr22_45133255_-	5.741814e+00	3.563821e+00	1.453316e+00	2.461955e+00	1.381818e-02	1.867100e-02	UP
ENSG00000226328	LncEditing_393451	GBM	chr22_45133222_-	7.713424e+00	3.704038e+00	9.449362e-01	8.156228e+00	3.456486e-16	7.767492e-15	UP
ENSG00000226328	LncEditing_393454	GBM	chr22_45133249_-	9.280239e+00	4.018476e+00	8.281480e-01	7.230589e+00	4.809023e-13	4.275274e-12	UP
ENSG00000226328	LncEditing_393458	GBM	chr22_45133255_-	8.894298e+00	3.918676e+00	8.456556e-01	7.773128e+00	7.657140e-15	1.264209e-13	UP
ENSG00000226328	LncEditing_393469	GBM	chr22_45133286_-	7.103582e+00	4.181288e+00	1.307875e+00	5.299527e+00	1.161032e-07	2.660835e-07	UP
ENSG00000226328	LncEditing_393475	GBM	chr22_45133311_-	6.477848e+00	4.103471e+00	1.518211e+00	5.323794e+00	1.016250e-07	2.348989e-07	UP
ENSG00000226328	LncEditing_393477	GBM	chr22_45133322_-	6.939945e+00	4.583490e+00	1.670905e+00	4.377597e+00	1.199951e-05	1.969089e-05	UP
ENSG00000226328	LncEditing_393480	GBM	chr22_45133357_-	5.721695e+00	4.606499e+00	3.197219e+00	3.071682e+00	2.128565e-03	2.528648e-03	UP
ENSG00000226328	LncEditing_393487	GBM	chr22_45133449_-	5.892746e+00	3.571892e+00	1.384559e+00	5.674618e+00	1.389985e-08	3.748326e-08	UP
ENSG00000226328	LncEditing_393489	GBM	chr22_45133462_-	5.448414e+00	4.733791e+00	4.929991e+00	2.227799e+00	2.589394e-02	2.656143e-02	UP
ENSG00000226328	LncEditing_393496	GBM	chr22_45133521_-	7.494031e+00	4.109112e+00	1.153515e+00	5.981302e+00	2.213615e-09	7.106407e-09	UP
ENSG00000226328	LncEditing_393487	MESO	chr22_45133449_-	4.098105e+00	1.985016e+00	9.562001e-01	3.333443e+00	8.577826e-04	1.382230e-03	UP
ENSG00000226328	LncEditing_393469	BLCA	chr22_45133286_-	5.892066e+00	3.473611e+00	1.311755e+00	8.578700e+00	9.595148e-18	2.999862e-17	UP
ENSG00000226328	LncEditing_393475	BLCA	chr22_45133311_-	5.457514e+00	3.425279e+00	1.488046e+00	8.525344e+00	1.523570e-17	4.709215e-17	UP
ENSG00000226328	LncEditing_393477	BLCA	chr22_45133322_-	5.501422e+00	3.750192e+00	1.808841e+00	6.226733e+00	4.762615e-10	7.757074e-10	UP
ENSG00000226328	LncEditing_393480	BLCA	chr22_45133357_-	4.905536e+00	3.732056e+00	2.535240e+00	4.877916e+00	1.072128e-06	1.402013e-06	UP
ENSG00000226328	LncEditing_393481	BLCA	chr22_45133358_-	4.881902e+00	3.833391e+00	2.866790e+00	4.402766e+00	1.068792e-05	1.339684e-05	UP
ENSG00000226328	LncEditing_393482	BLCA	chr22_45133364_-	4.844387e+00	3.868827e+00	3.082444e+00	3.744764e+00	1.805634e-04	2.126115e-04	UP
ENSG00000226328	LncEditing_393487	BLCA	chr22_45133449_-	5.521580e+00	3.415709e+00	1.443218e+00	8.933074e+00	4.143340e-19	1.426568e-18	UP
ENSG00000226328	LncEditing_393469	LGG	chr22_45133286_-	5.007261e+00	3.489316e+00	1.919101e+00	8.066206e+00	7.251636e-16	1.594908e-15	UP
ENSG00000226328	LncEditing_393475	LGG	chr22_45133311_-	4.743810e+00	3.581632e+00	2.466522e+00	5.435822e+00	5.454425e-08	7.334903e-08	UP
ENSG00000226328	LncEditing_393480	LGG	chr22_45133357_-	4.549434e+00	3.413178e+00	2.412130e+00	7.525775e+00	5.240866e-14	9.919708e-14	UP
ENSG00000226328	LncEditing_393481	LGG	chr22_45133358_-	4.297493e+00	3.658306e+00	4.304413e+00	4.166810e+00	3.088919e-05	3.586804e-05	UP
ENSG00000226328	LncEditing_393487	LGG	chr22_45133449_-	4.617940e+00	3.288347e+00	2.041287e+00	1.026318e+01	1.032521e-24	4.005272e-24	UP
ENSG00000226328	LncEditing_393489	LGG	chr22_45133462_-	5.289588e+00	3.526593e+00	1.709752e+00	7.985207e+00	1.402872e-15	3.001296e-15	UP
ENSG00000226328	LncEditing_393475	ACC	chr22_45133311_-	6.053163e+00	3.094162e+00	1.032908e+00	3.342003e+00	8.317617e-04	1.565669e-03	UP
ENSG00000226328	LncEditing_393477	ACC	chr22_45133322_-	5.897211e+00	3.236762e+00	1.155426e+00	2.892621e+00	3.820426e-03	5.370280e-03	UP
ENSG00000226328	LncEditing_393487	ACC	chr22_45133449_-	6.639789e+00	3.103281e+00	9.112921e-01	3.564407e+00	3.646792e-04	8.048092e-04	UP
ENSG00000226328	LncEditing_393469	LUSC	chr22_45133286_-	9.180437e+00	5.336471e+00	1.277667e+00	8.273423e+00	1.301669e-16	2.548116e-16	UP
ENSG00000226328	LncEditing_393475	LUSC	chr22_45133311_-	8.637058e+00	5.186973e+00	1.359347e+00	9.240161e+00	2.461262e-20	6.794766e-20	UP
ENSG00000226328	LncEditing_393480	LUSC	chr22_45133357_-	7.220427e+00	5.755336e+00	3.056384e+00	4.002835e+00	6.258798e-05	6.899631e-05	UP
ENSG00000226328	LncEditing_393487	LUSC	chr22_45133449_-	8.627512e+00	5.180876e+00	1.359160e+00	9.500157e+00	2.095736e-21	6.508872e-21	UP
ENSG00000226328	LncEditing_393469	HNSC	chr22_45133286_-	9.277190e+00	5.456152e+00	1.305817e+00	9.239171e+00	2.484138e-20	4.839229e-20	UP
ENSG00000226328	LncEditing_393475	HNSC	chr22_45133311_-	8.408339e+00	5.346648e+00	1.530957e+00	9.362599e+00	7.779910e-21	1.598612e-20	UP
ENSG00000226328	LncEditing_393480	HNSC	chr22_45133357_-	7.521867e+00	5.764108e+00	2.604210e+00	5.918570e+00	3.247521e-09	4.199380e-09	UP
ENSG00000226328	LncEditing_393487	HNSC	chr22_45133449_-	8.340672e+00	5.328962e+00	1.547247e+00	9.604323e+00	7.666033e-22	1.716276e-21	UP
ENSG00000226328	LncEditing_393469	KICH	chr22_45133286_-	6.233011e+00	4.502312e+00	2.130999e+00	2.545120e+00	1.092403e-02	1.463540e-02	UP
ENSG00000226328	LncEditing_393489	KICH	chr22_45133462_-	6.841187e+00	4.604292e+00	1.750494e+00	2.647863e+00	8.100239e-03	1.128633e-02	UP
ENSG00000226328	LncEditing_393469	SKCM	chr22_45133286_-	7.686036e+00	4.747084e+00	1.438439e+00	9.388222e+00	6.102165e-21	1.248170e-20	UP
ENSG00000226328	LncEditing_393475	SKCM	chr22_45133311_-	6.707371e+00	4.892564e+00	2.197046e+00	6.755083e+00	1.427531e-11	1.901809e-11	UP
ENSG00000226328	LncEditing_393477	SKCM	chr22_45133322_-	7.000897e+00	5.203043e+00	2.335444e+00	4.808219e+00	1.522805e-06	1.742193e-06	UP
ENSG00000226328	LncEditing_393480	SKCM	chr22_45133357_-	6.503263e+00	5.149380e+00	2.969429e+00	4.938185e+00	7.885313e-07	9.124433e-07	UP
ENSG00000226328	LncEditing_393481	SKCM	chr22_45133358_-	6.180624e+00	5.343757e+00	4.764215e+00	2.772227e+00	5.567419e-03	5.752053e-03	UP
ENSG00000226328	LncEditing_393487	SKCM	chr22_45133449_-	7.334149e+00	4.545762e+00	1.449050e+00	9.848271e+00	6.973340e-23	1.701327e-22	UP
ENSG00000226328	LncEditing_393489	SKCM	chr22_45133462_-	8.348776e+00	5.062989e+00	1.385857e+00	6.500761e+00	7.991479e-11	1.030748e-10	UP
ENSG00000226328	LncEditing_393496	SKCM	chr22_45133521_-	8.326846e+00	5.065828e+00	1.394755e+00	6.558139e+00	5.448332e-11	7.072354e-11	UP
ENSG00000226328	LncEditing_393511	SKCM	chr22_45133622_-	9.753567e+00	4.881073e+00	1.001270e+00	7.390126e+00	1.466896e-13	2.062822e-13	UP
ENSG00000226328	LncEditing_393815	LAML	chr22_45150254_-	8.000129e+00	4.509141e+00	1.208940e+00	5.015834e+00	5.280392e-07	1.288791e-06	UP
ENSG00000226328	LncEditing_393904	LAML	chr22_45152596_-	6.851001e+00	3.997196e+00	1.286461e+00	6.060228e+00	1.359285e-09	5.995417e-09	UP
ENSG00000226328	LncEditing_394019	LAML	chr22_45157170_-	8.105021e+00	4.651864e+00	1.248429e+00	3.984074e+00	6.774384e-05	1.095074e-04	UP
ENSG00000226328	LncEditing_394027	LAML	chr22_45157198_-	6.959752e+00	4.409834e+00	1.519038e+00	5.065550e+00	4.072218e-07	1.013950e-06	UP
ENSG00000226328	LncEditing_393458	PCPG	chr22_45133255_-	4.792163e+00	3.609849e+00	2.446553e+00	3.551349e+00	3.832611e-04	5.089205e-04	UP
ENSG00000226328	LncEditing_393469	PCPG	chr22_45133286_-	4.358924e+00	3.506034e+00	3.183373e+00	4.055465e+00	5.003467e-05	7.869530e-05	UP
ENSG00000226328	LncEditing_393475	PCPG	chr22_45133311_-	4.150643e+00	3.472094e+00	3.883059e+00	4.133543e+00	3.572128e-05	5.786847e-05	UP
ENSG00000226328	LncEditing_393480	PCPG	chr22_45133357_-	4.027509e+00	3.459924e+00	4.563141e+00	2.475954e+00	1.328806e-02	1.451236e-02	UP
ENSG00000226328	LncEditing_393481	PCPG	chr22_45133358_-	4.128106e+00	3.567518e+00	4.749255e+00	3.085745e+00	2.030429e-03	2.442546e-03	UP
ENSG00000226328	LncEditing_393487	PCPG	chr22_45133449_-	4.268488e+00	2.903917e+00	1.799452e+00	7.245428e+00	4.310756e-13	4.733126e-12	UP
ENSG00000226328	LncEditing_393489	PCPG	chr22_45133462_-	4.471644e+00	3.606727e+00	3.224608e+00	3.926868e+00	8.605921e-05	1.294885e-04	UP
ENSG00000226328	LncEditing_393496	PCPG	chr22_45133521_-	4.440722e+00	3.662520e+00	3.597670e+00	2.924072e+00	3.454847e-03	4.085294e-03	UP
ENSG00000226328	LncEditing_393469	KIRP	chr22_45133286_-	3.756617e+00	2.379288e+00	1.517671e+00	5.561580e+00	2.673437e-08	4.820776e-08	UP
ENSG00000226328	LncEditing_393469	CHOL	chr22_45133286_-	6.938371e+00	4.487436e+00	1.590570e+00	3.288958e+00	1.005590e-03	4.223477e-03	UP
ENSG00000226328	LncEditing_393475	CHOL	chr22_45133311_-	6.891594e+00	4.628610e+00	1.741375e+00	2.628448e+00	8.577542e-03	1.478129e-02	UP
ENSG00000226328	LncEditing_393477	CHOL	chr22_45133322_-	7.931369e+00	4.701089e+00	1.325249e+00	2.940915e+00	3.272441e-03	7.816636e-03	UP
ENSG00000226328	LncEditing_393487	CHOL	chr22_45133449_-	7.143280e+00	4.879959e+00	1.819115e+00	2.366344e+00	1.796474e-02	2.342876e-02	UP
ENSG00000226328	LncEditing_393489	CHOL	chr22_45133462_-	8.940679e+00	5.079656e+00	1.226011e+00	2.718182e+00	6.564172e-03	1.231003e-02	UP
ENSG00000226328	LncEditing_393496	CHOL	chr22_45133521_-	8.818890e+00	5.094880e+00	1.263346e+00	2.567172e+00	1.025318e-02	1.594939e-02	UP
ENSG00000226328	LncEditing_393454	THYM	chr22_45133249_-	7.226857e+00	4.784615e+00	1.680770e+00	4.553250e+00	5.282345e-06	1.250232e-05	UP
ENSG00000226328	LncEditing_393458	THYM	chr22_45133255_-	6.806490e+00	4.789107e+00	1.971787e+00	4.081974e+00	4.465485e-05	8.345837e-05	UP
ENSG00000226328	LncEditing_393469	THYM	chr22_45133286_-	6.402485e+00	4.550788e+00	2.030393e+00	4.956457e+00	7.179042e-07	2.126303e-06	UP
ENSG00000226328	LncEditing_393475	THYM	chr22_45133311_-	6.192489e+00	4.893941e+00	2.945309e+00	3.306852e+00	9.435089e-04	1.331723e-03	UP
ENSG00000226328	LncEditing_393480	THYM	chr22_45133357_-	5.920196e+00	5.068724e+00	4.463840e+00	2.457249e+00	1.400054e-02	1.594180e-02	UP
ENSG00000226328	LncEditing_393487	THYM	chr22_45133449_-	5.902691e+00	4.722445e+00	3.107147e+00	3.062271e+00	2.196648e-03	2.861978e-03	UP
ENSG00000226328	LncEditing_393496	THYM	chr22_45133521_-	6.982496e+00	5.091064e+00	2.194062e+00	3.245640e+00	1.171869e-03	1.628597e-03	UP
ENSG00000226328	LncEditing_393454	OV	chr22_45133249_-	4.581136e+00	2.694412e+00	1.305935e+00	6.182289e+00	6.317893e-10	1.064950e-09	UP
ENSG00000226328	LncEditing_393458	OV	chr22_45133255_-	4.660085e+00	2.710370e+00	1.278991e+00	5.566627e+00	2.597176e-08	3.787634e-08	UP
ENSG00000226328	LncEditing_393475	OV	chr22_45133311_-	4.633338e+00	2.749710e+00	1.328423e+00	5.064295e+00	4.099141e-07	5.506443e-07	UP
ENSG00000226328	LncEditing_393904	OV	chr22_45152596_-	4.458319e+00	2.727976e+00	1.411096e+00	7.033162e+00	2.019041e-12	4.358001e-12	UP
ENSG00000226328	LncEditing_394085	OV	chr22_45161737_-	4.248338e+00	2.839855e+00	1.720929e+00	3.873244e+00	1.073964e-04	1.232077e-04	UP
ENSG00000226328	LncEditing_394097	OV	chr22_45161773_-	4.182543e+00	2.859385e+00	1.822571e+00	3.802723e+00	1.431144e-04	1.627628e-04	UP
ENSG00000226328	LncEditing_393469	TGCT	chr22_45133286_-	3.961595e+00	2.405564e+00	1.389456e+00	3.910506e+00	9.210313e-05	1.285672e-04	UP
ENSG00000226328	LncEditing_393475	TGCT	chr22_45133311_-	3.650530e+00	2.336113e+00	1.552805e+00	4.726817e+00	2.280661e-06	3.776479e-06	UP
ENSG00000226328	LncEditing_393480	TGCT	chr22_45133357_-	3.967690e+00	2.298363e+00	1.269530e+00	5.707611e+00	1.145731e-08	2.806013e-08	UP
ENSG00000226328	LncEditing_393481	TGCT	chr22_45133358_-	3.768521e+00	2.426104e+00	1.573918e+00	4.132933e+00	3.581639e-05	5.176291e-05	UP
ENSG00000226328	LncEditing_393487	TGCT	chr22_45133449_-	3.982756e+00	2.345245e+00	1.308852e+00	5.322186e+00	1.025276e-07	2.056988e-07	UP
ENSG00000226328	LncEditing_393475	LUAD	chr22_45133311_-	5.991280e+00	2.999861e+00	1.002036e+00	9.009816e+00	2.064023e-19	5.803390e-19	UP
ENSG00000226328	LncEditing_393480	LUAD	chr22_45133357_-	4.943291e+00	3.217500e+00	1.614122e+00	6.845289e+00	7.632182e-12	1.193045e-11	UP
ENSG00000226328	LncEditing_393487	LUAD	chr22_45133449_-	5.809541e+00	3.072252e+00	1.087988e+00	8.673240e+00	4.199951e-18	1.010321e-17	UP
ENSG00000226328	LncEditing_393475	STAD	chr22_45133311_-	5.047908e+00	3.114704e+00	1.435563e+00	4.958469e+00	7.105105e-07	8.964327e-07	UP
ENSG00000226328	LncEditing_393511	STAD	chr22_45133622_-	5.095586e+00	3.084769e+00	1.381052e+00	5.453514e+00	4.938412e-08	6.703134e-08	UP
ENSG00000226328	LncEditing_393904	STAD	chr22_45152596_-	4.355165e+00	2.951850e+00	1.782189e+00	7.101458e+00	1.234471e-12	2.408396e-12	UP
ENSG00000226328	LncEditing_394027	STAD	chr22_45157198_-	4.479421e+00	3.168792e+00	2.002485e+00	4.204483e+00	2.616794e-05	3.066488e-05	UP
ENSG00000226328	LncEditing_394085	STAD	chr22_45161737_-	4.174542e+00	3.138131e+00	2.428881e+00	3.317369e+00	9.086965e-04	9.786002e-04	UP
ENSG00000226328	LncEditing_394097	STAD	chr22_45161773_-	4.224550e+00	3.097690e+00	2.234113e+00	3.869345e+00	1.091280e-04	1.233396e-04	UP
ENSG00000226328	LncEditing_394167	STAD	chr22_45162985_-	4.891384e+00	3.101769e+00	1.521719e+00	5.443111e+00	5.235800e-08	7.079948e-08	UP
ENSG00000226328	LncEditing_393454	CESC	chr22_45133249_-	8.999881e+00	4.879499e+00	1.132281e+00	6.278309e+00	3.422748e-10	7.534970e-10	UP
ENSG00000226328	LncEditing_393458	CESC	chr22_45133255_-	8.549736e+00	4.886942e+00	1.239238e+00	6.158180e+00	7.358588e-10	1.531788e-09	UP
ENSG00000226328	LncEditing_393469	CESC	chr22_45133286_-	7.381925e+00	4.756020e+00	1.576684e+00	6.461679e+00	1.035476e-10	2.475435e-10	UP
ENSG00000226328	LncEditing_393475	CESC	chr22_45133311_-	7.418443e+00	4.574695e+00	1.433813e+00	7.358652e+00	1.857763e-13	6.767565e-13	UP
ENSG00000226328	LncEditing_393477	CESC	chr22_45133322_-	7.159885e+00	5.158398e+00	2.114105e+00	4.789889e+00	1.668733e-06	2.386132e-06	UP
ENSG00000226328	LncEditing_393480	CESC	chr22_45133357_-	6.155346e+00	5.256259e+00	4.389748e+00	2.938396e+00	3.299151e-03	3.505348e-03	UP
ENSG00000226328	LncEditing_393487	CESC	chr22_45133449_-	7.003443e+00	4.596658e+00	1.646148e+00	7.041222e+00	1.905615e-12	5.831183e-12	UP
ENSG00000226328	LncEditing_393496	CESC	chr22_45133521_-	7.770125e+00	5.151720e+00	1.686671e+00	5.392929e+00	6.931823e-08	1.122295e-07	UP
ENSG00000226328	LncEditing_393511	CESC	chr22_45133622_-	9.442180e+00	4.941202e+00	1.070368e+00	7.418605e+00	1.183600e-13	4.471377e-13	UP
ENSG00000226328	LncEditing_393469	PRAD	chr22_45133286_-	4.026317e+00	2.503756e+00	1.459073e+00	9.164707e+00	4.968186e-20	1.906622e-19	UP
ENSG00000226328	LncEditing_393475	PRAD	chr22_45133311_-	3.962217e+00	2.545570e+00	1.566615e+00	8.022594e+00	1.035353e-15	2.886290e-15	UP
ENSG00000226328	LncEditing_393480	PRAD	chr22_45133357_-	3.609029e+00	2.645073e+00	2.230635e+00	6.105042e+00	1.027734e-09	1.840579e-09	UP
ENSG00000226328	LncEditing_393487	PRAD	chr22_45133449_-	3.830353e+00	2.452554e+00	1.554744e+00	1.041963e+01	2.017461e-25	1.074161e-24	UP
ENSG00000226328	LncEditing_393475	BRCA	chr22_45133311_-	4.283700e+00	2.518684e+00	1.305164e+00	1.409633e+01	4.000374e-45	1.404962e-44	UP
ENSG00000226328	LncEditing_393480	BRCA	chr22_45133357_-	3.849980e+00	2.607275e+00	1.778386e+00	1.146219e+01	2.042746e-30	3.857341e-30	UP
ENSG00000226328	LncEditing_393481	BRCA	chr22_45133358_-	3.872338e+00	2.720712e+00	1.963785e+00	8.710924e+00	3.014089e-18	4.065385e-18	UP
ENSG00000226328	LncEditing_393487	BRCA	chr22_45133449_-	4.239710e+00	2.452977e+00	1.266733e+00	1.585647e+01	1.268179e-56	7.747616e-56	UP
ENSG00000226328	LncEditing_393469	PAAD	chr22_45133286_-	5.976306e+00	3.734347e+00	1.474061e+00	5.324811e+00	1.010581e-07	2.553046e-07	UP
ENSG00000226328	LncEditing_393475	PAAD	chr22_45133311_-	5.016775e+00	3.810064e+00	2.519239e+00	4.865264e+00	1.143043e-06	2.327585e-06	UP
ENSG00000226328	LncEditing_393477	PAAD	chr22_45133322_-	5.085922e+00	4.032372e+00	2.986138e+00	3.818600e+00	1.342110e-04	1.918931e-04	UP
ENSG00000226328	LncEditing_393480	PAAD	chr22_45133357_-	4.510954e+00	4.080333e+00	6.908666e+00	2.556945e+00	1.055958e-02	1.133552e-02	UP
ENSG00000226328	LncEditing_393481	PAAD	chr22_45133358_-	4.639080e+00	4.084728e+00	5.446655e+00	2.915879e+00	3.546879e-03	4.048218e-03	UP
ENSG00000226328	LncEditing_393487	PAAD	chr22_45133449_-	4.729035e+00	3.928814e+00	3.738988e+00	3.448228e+00	5.642783e-04	7.236546e-04	UP
ENSG00000226328	LncEditing_393437	ESCA	chr22_45133151_-	6.672440e+00	4.319945e+00	1.594384e+00	4.337500e+00	1.441126e-05	1.989855e-05	UP
ENSG00000226328	LncEditing_393451	ESCA	chr22_45133222_-	8.045828e+00	4.022790e+00	9.999555e-01	6.246606e+00	4.194664e-10	1.207694e-09	UP
ENSG00000226328	LncEditing_393454	ESCA	chr22_45133249_-	7.286604e+00	4.190699e+00	1.253046e+00	5.371092e+00	7.826138e-08	1.479133e-07	UP
ENSG00000226328	LncEditing_393458	ESCA	chr22_45133255_-	7.537135e+00	4.042962e+00	1.112838e+00	6.210390e+00	5.285330e-10	1.477074e-09	UP
ENSG00000226328	LncEditing_393475	ESCA	chr22_45133311_-	7.127720e+00	4.176611e+00	1.296836e+00	5.062666e+00	4.134345e-07	7.016669e-07	UP
ENSG00000226328	LncEditing_393584	ESCA	chr22_45140348_-	7.721890e+00	3.974502e+00	1.043645e+00	6.592600e+00	4.321904e-11	1.504769e-10	UP
ENSG00000226328	LncEditing_393599	ESCA	chr22_45140384_-	7.479866e+00	3.949266e+00	1.085272e+00	6.090240e+00	1.127419e-09	2.976159e-09	UP
ENSG00000226328	LncEditing_393647	ESCA	chr22_45140513_-	7.422666e+00	3.963899e+00	1.104951e+00	5.957165e+00	2.566512e-09	6.283600e-09	UP
ENSG00000226328	LncEditing_393650	ESCA	chr22_45140514_-	7.106173e+00	4.068411e+00	1.242842e+00	5.022899e+00	5.089720e-07	8.527621e-07	UP
ENSG00000226328	LncEditing_393815	ESCA	chr22_45150254_-	6.054500e+00	4.135371e+00	1.818211e+00	4.100212e+00	4.127726e-05	5.397201e-05	UP
ENSG00000226328	LncEditing_393904	ESCA	chr22_45152596_-	5.819050e+00	3.398334e+00	1.288733e+00	6.531598e+00	6.507153e-11	2.199837e-10	UP
ENSG00000226328	LncEditing_393934	ESCA	chr22_45154222_-	7.929011e+00	4.260894e+00	1.116091e+00	4.817789e+00	1.451579e-06	2.285883e-06	UP
ENSG00000226328	LncEditing_394019	ESCA	chr22_45157170_-	6.336493e+00	3.986746e+00	1.495947e+00	3.876993e+00	1.057554e-04	1.320997e-04	UP
ENSG00000226328	LncEditing_394027	ESCA	chr22_45157198_-	5.904572e+00	3.654575e+00	1.444818e+00	5.539088e+00	3.040506e-08	6.121903e-08	UP
ENSG00000226328	LncEditing_394085	ESCA	chr22_45161737_-	5.723224e+00	4.031429e+00	1.978096e+00	3.461961e+00	5.362549e-04	6.258297e-04	UP
ENSG00000226328	LncEditing_394087	ESCA	chr22_45161738_-	6.309882e+00	4.382998e+00	1.902244e+00	2.946671e+00	3.212146e-03	3.532349e-03	UP
ENSG00000226328	LncEditing_394097	ESCA	chr22_45161773_-	5.583665e+00	4.144220e+00	2.324978e+00	3.054213e+00	2.256518e-03	2.511769e-03	UP
ENSG00000226328	LncEditing_394167	ESCA	chr22_45162985_-	5.764430e+00	4.309129e+00	2.382190e+00	3.845228e+00	1.204404e-04	1.498178e-04	UP
ENSG00000226328	LncEditing_394179	ESCA	chr22_45163055_-	6.575591e+00	4.217157e+00	1.560428e+00	3.961838e+00	7.437503e-05	9.447882e-05	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000226328	LncEditing_393480	-4.448873e-01	2.938032e-02	3.614636e-02
ENSG00000226328	LncEditing_393480	-3.376545e-01	4.548660e-03	7.797703e-03
ENSG00000226328	LncEditing_393458	-4.059497e-01	2.602555e-02	3.592259e-02
ENSG00000226328	LncEditing_393496	-6.051548e-01	2.841960e-02	3.763677e-02
ENSG00000226328	LncEditing_393477	-3.411131e-01	6.664441e-03	7.594364e-03
ENSG00000226328	LncEditing_393475	-3.011650e-01	6.764855e-04	9.067784e-04
ENSG00000226328	LncEditing_393480	-4.440711e-01	5.208361e-06	1.822926e-05
ENSG00000226328	LncEditing_393487	-3.998966e-01	2.663766e-06	1.122594e-05
ENSG00000226328	LncEditing_393480	-3.480513e-01	7.751991e-04	3.038780e-03
ENSG00000226328	LncEditing_393469	-3.893302e-01	8.997756e-03	1.296735e-02
ENSG00000226328	LncEditing_393487	-3.732402e-01	2.196749e-03	4.784031e-03
ENSG00000226328	LncEditing_393458	3.748625e-01	4.510894e-02	4.654859e-02
ENSG00000226328	LncEditing_393487	-7.533846e-01	2.944137e-03	1.087066e-02
ENSG00000226328	LncEditing_393475	-3.530099e-01	1.026016e-02	1.640612e-02
ENSG00000226328	LncEditing_393480	-3.403511e-01	4.888577e-02	4.909166e-02
ENSG00000226328	LncEditing_393481	-5.748746e-01	2.647421e-03	6.849980e-03
ENSG00000226328	LncEditing_393487	-3.950417e-01	3.751457e-03	8.962102e-03
ENSG00000226328	LncEditing_393475	-3.137750e-01	8.653211e-03	9.049173e-03
ENSG00000226328	LncEditing_393480	-3.333434e-01	3.264924e-05	7.217200e-05
ENSG00000226328	LncEditing_393481	-4.609109e-01	1.632975e-04	2.637882e-04
ENSG00000226328	LncEditing_393489	-3.271760e-01	9.442000e-03	9.719705e-03
ENSG00000226328	LncEditing_393480	-3.360044e-01	4.763044e-03	5.405677e-03
ENSG00000226328	LncEditing_393487	-3.222757e-01	3.722853e-04	6.263153e-04
ENSG00000226328	LncEditing_393477	-7.678244e-01	2.609347e-02	4.535387e-02
ENSG00000226328	LncEditing_393487	-8.306233e-01	5.555914e-03	4.535387e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000226328	ENSG00000167967	E4F1	ENSG00000184436	THAP7	5	KIRP,LGG,MESO,PAAD,PRAD

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000226328.5	ENST00000426282.5	169	1460	951
ENSG00000226328.5	ENST00000432502.1	155	1144	1611
ENSG00000226328.5	ENST00000609284.1	120	360	1

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential